rna3556, rna3556 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3556
Unique Name	rna3556
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	930
Alignment location	CM002461.1:690082..693015 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidase s8 and s53
Orig transcript id	gnl\|cribi\|Naga_101295g1.8953.mrna
Orig protein id	gnl\|cribi\|Naga_101295g1.8953
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:690082..693015 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101295g1	gene3426	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27126.1	cds3547	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3556	rna3556-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:690082..693015-
coding sequence from alignment at CM002461.1:690082..693015-

mRNA sequence

>rna3556 ID=rna3556|Name=rna3556|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
ATGGACGAAGACGCAGTATTTGAGGACGGACCGAGTATAGGGCGTTTCCG
GGTAACCAAACTGAAAGGTTTGAATATCTGTCCCGCTATAGATGAAAATG
GTGCCTCAGCCTCATCAGAAGAAGAAAATGGTTACAAAGTAAAATTCGTA
GTACTGCTTTTTGGATGGTTGACTTGCCAAGATAAGCATCTCAGAAAATA
TGCAGCGCTATATCACGAACACTTTGCTTGCAAAGTAGTGCTACGCTACA
CTGTACCTGCCGGCAATGTCCTCCGTAGAAAGCAATCAGAAGTGGTGCGC
ACAGCGGAGGATATCATGTCTTTGATACCTCTATTTTTTCCTCGAGCCAA
AGTACTTGTGCATTACTTTAGTAATGGAGGTTGCTTTGTTCATCGCAGAT
TGCTACTGCTGCTGAACGGTCACTATAGACAACGGTCGCGACGGTTCTGC
TGTGATAGAAGACCGCCCAATGAGGAGCACTCCTTTTCTCAGCTCGCCGC
AACAATATTTGATAGCTGTCCAGCGGCTGCAGACGCTCAAACTGGTGCTA
AGGCACTCAGCGCAGCCTTGCGGGCACCCTTCGCCCGGCTTGCCACCTAT
ATCACCATCCGTTTCGGCCTTGAAGTCTATGGACTAGCACAATGCTGGCG
ATATGAGCGCAAATACTTGGAGCATATAGAGAACGATCACCTGCTTATTC
CTAGCCTTTATATATACTCGGATGATGACACCATCACAGACGCAGCACTG
GTTGAAAGGATTGTGACGAAGCGGAAAGCATATTTCACATCCCAGGGCAT
TGTTGCAGATGTCATGGTGAGGACATGGAAGGTTAGTGAACCATCAAGTC
ATGTCTGCCACTATGCGCACCACCCAGATGCATACAGGGCTGAAGTCGGG
AAGTTTCTTCAGGCGCACGGATTATTGTGA

protein sequence of rna3556

>rna3556-protein ID=rna3556-protein|Name=rna3556|organism=Nannochloropsis gaditana|type=polypeptide|length=517bp
MYEYDDTLVLVSGGNKGREGIGGVASPALSKNVLSVGASLSNRYADLDPT
HVAYFSSWGPTKDGRIKPDIVTPGRRLVSAASGATCGVTIKQGTSMACPV
AAGSAAMVRQYFVEGWYPRGVKRAADGFVPTGALLKAMLINSAVPMAAFD
FNNGTLLPLGLPPDVYQGYGRIKLADVLPIKSLGATTTPNLYVVNGASIK
EEEKHVYKFSIPATGKSPVKITLVWIDPDTTASSATTVLHDLDLMVYSQK
EGSSYFPNGRTNADNVNTVEKVALYSPTPGDTLTVTVTATSVATRPEQRY
ALAASGNFVSGAWYCQSPRSSRAGEVFTTENCDQSCDNNGFLKEPVCCDA
SAGSVCSAQEIAAAAAVGLECDAATRPIECPAPVPVVPPTKAPTRRPTRS
PTEAPIRSPTKPVTGDWYCQFPRSTRSNDAQTIRNCLVSCDDSGFLKNPV
CCPPLTVGSVCNDEEASAAQANGVACSTAARPEECAGAPAPNPPAPAPAA
PSPVPAGRGAWYCQYPR

mRNA from alignment at CM002461.1:690082..693015-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3556 ID=rna3556|Name=rna3556|organism=Nannochloropsis gaditana|type=mRNA|length=2934bp|location=Sequence derived from alignment at CM002461.1:690082..693015- (Nannochloropsis gaditana)
CGGCCCCTTTCTTTCTGTGCGCCACGAACGGGCACAGAGGGTACAGTGAG
ATGATGAACGCATTCAATGAGACGTTCGTGCTCCCGCTTTTTGCGAACGC
GACCTTGACGTGTCAGATCGTGCATTCGACCGCACGCCGCGTCCTAAACT
TGACAGCCACCCTGCCTCAAGTGACCTATGGTGCTCCCGTGCCCTCCGTC
ATGAAGATCTCAAAGGATATTCTGCGTCGCATCATTGATGGTTCTTTTTG
GAAACGCTCAGCTCCCAGGCTTCGACTTGTCGTGAGTCCTGGTCTCGAGC
ACGATGAGTCGGGTCTGATGAAAGTTCTTCAACGCATCGTAACCAGCTTG
CAGTCGGGCACCTTTGTAGAGGCGGTGGAGGAGGACTTCGAGTGGACCGC
TGTCGAGACCGCAAGTAACTCTACCGCTGCGGCTGCCCAACAAAGTCGAC
GTCGACAAAAGCGTGAGCGCTTGCGGCAGCGGCGGCTCGGTACTGGGTTG
GGTGGGGATGAAAATGAGGACACGAGCCAGCCTTCTGCCGGGGACGACAG
CGACAAGCTTTTGAGGAGAAATAGTGCAAGACAATGGTCGCAGCATATCA
ATCCGGTGCTTGAAGGTGATCTTTCCTGCGATTTCTCAAACGTGGGGGCG
TCTATCCAGTATCCTTATCTGCGACTCAGCGGCTTCGACAACCTGGCCTT
GAAAGCAGACGGAAAGAGAAGACTTGAGCAAGCATACGACTCCAACAGCA
CCATATCTGATCAGTCTGCATGCCTTTTGGCCTTGTTGGCATTTGTGAGC
AGCGACCCGGCCGTGCTGTACGTTGAGGAGTATTCCTCTGTTGTTCTGTA
CAATGCCGCGGCTGCTCATCTAACGCAGTCAGGTGACGATGGACAGTACA
ACCAAGCTACCAGCTCTTTCCCGCTCTACGACGTGGGTCTGGACGGTACA
AATCAGGTGGTGCAAGTCGTCGACACGGGCGTCGATCAGAACAGTTGTTT
CTTCAGCGATGCCAAAGGTCCTCTACCGACGACTACCATAAGCGAGGCTG
CTTTCGACTCGAGCAGACGAAAGATTGTCCAGTACGTGCAATGGGCGGAC
AGCACAGACGTGGAAAATGGTCATGGGACCCACGTGGCGGGAACTATGGC
AGGAGTCAGTTTGGATACGTCCATGGACATGTCATCCTACGAAGGAGTGG
CGCGCGGCGCGAAGCTGGCATTTTTTGACATGGGTTTCAGCTCTGGGGGC
TGACTTTGCCGTCCAACTTCGCGACGCGTCTTTTCCCGCCGGGATACGCT
GCGGGAGCGAGGATTTTCAGTAACTCTTGGGGCACACCGTCAGCCAAGTT
TTATACATCGGCAGACACAGAGATCGACAAGTTCATGTATGAGTACGATG
ACACTCTGGTGCTCGTGTCAGGAGGCAATAAAGGACGCGAAGGCATTGGT
GGTGTCGCAAGCCCTGCCCTATCCAAGAACGTCTTGTCAGTGGGAGCCTC
TTTGAGTAATCGATACGCCGACTTGGATCCCACTCATGTAGCCTACTTCT
CATCCTGGGGTCCAACAAAAGATGGCCGCATCAAGCCAGACATTGTTACT
CCCGGACGCCGGCTAGTCTCGGCTGCGTCGGGAGCAACCTGCGGAGTCAC
TATCAAGCAGGGCACGTCCATGGCCTGTCCTGTAGCAGCGGGATCCGCCG
CGATGGTCCGGCAGTATTTCGTGGAGGGATGGTACCCGCGCGGAGTGAAA
AGAGCCGCCGATGGTTTTGTTCCAACAGGTGCTCTGCTCAAGGCGATGCT
GATCAATTCTGCAGTGCCTATGGCAGCGTTTGATTTCAACAACGGGACGC
TACTGCCACTTGGATTGCCACCTGATGTGTATCAGGGCTATGGACGGATC
AAGCTCGCCGACGTGCTGCCTATCAAGAGCCTGGGGGCGACTACCACGCC
GAACCTGTACGTTGTGAATGGAGCCAGTATCAAGGAGGAAGAAAAGCACG
TGTACAAGTTTAGCATCCCCGCCACAGGAAAGAGTCCGGTCAAGATCACG
TTGGTGTGGATCGATCCTGACACAACAGCTAGCTCTGCGACGACTGTGTT
GCATGACCTGGATCTTATGGTATACAGTCAGAAAGAAGGCTCGTCCTACT
TTCCCAACGGTCGAACGAATGCGGACAACGTGAATACGGTCGAAAAAGTC
GCACTGTACTCGCCCACGCCGGGTGACACCTTGACCGTGACAGTGACCGC
GACGTCTGTTGCCACTCGGCCCGAGCAGCGATACGCTTTGGCGGCTTCCG
GGAACTTTGTGTCGGGGGCATGGTACTGTCAGTCTCCTCGATCGTCCCGT
GCTGGGGAGGTGTTTACTACCGAGAACTGCGATCAGAGTTGCGATAACAA
CGGCTTTCTGAAGGAGCCTGTGTGTTGCGACGCATCAGCTGGGAGCGTGT
GCAGTGCCCAAGAAATCGCCGCTGCTGCTGCCGTTGGTCTGGAATGTGAT
GCGGCAACTCGGCCCATCGAATGTCCGGCGCCGGTCCCTGTAGTACCACC
GACGAAAGCCCCGACAAGGCGCCCGACAAGGTCTCCGACGGAAGCCCCGA
TAAGATCTCCAACGAAGCCTGTCACGGGGGACTGGTACTGTCAGTTTCCT
CGATCAACTCGCAGCAACGATGCTCAGACCATTAGAAACTGCCTCGTAAG
TTGCGACGACAGTGGCTTTCTAAAGAACCCTGTATGTTGCCCTCCTCTTA
CAGTTGGGTCTGTTTGCAATGACGAGGAAGCATCGGCAGCTCAGGCAAAT
GGCGTCGCATGCAGCACTGCAGCGCGGCCTGAGGAATGCGCAGGGGCGCC
TGCTCCGAACCCTCCGGCCCCGGCCCCTGCAGCTCCGTCGCCTGTGCCAG
CTGGACGCGGGGCCTGGTACTGCCAGTATCCTCG

Coding sequence (CDS) from alignment at CM002461.1:690082..693015-

>rna3556 ID=rna3556|Name=rna3556|organism=Nannochloropsis gaditana|type=CDS|length=1550bp|location=Sequence derived from alignment at CM002461.1:690082..693015- (Nannochloropsis gaditana)
ATGTATGAGTACGATGACACTCTGGTGCTCGTGTCAGGAGGCAATAAAGG
ACGCGAAGGCATTGGTGGTGTCGCAAGCCCTGCCCTATCCAAGAACGTCT
TGTCAGTGGGAGCCTCTTTGAGTAATCGATACGCCGACTTGGATCCCACT
CATGTAGCCTACTTCTCATCCTGGGGTCCAACAAAAGATGGCCGCATCAA
GCCAGACATTGTTACTCCCGGACGCCGGCTAGTCTCGGCTGCGTCGGGAG
CAACCTGCGGAGTCACTATCAAGCAGGGCACGTCCATGGCCTGTCCTGTA
GCAGCGGGATCCGCCGCGATGGTCCGGCAGTATTTCGTGGAGGGATGGTA
CCCGCGCGGAGTGAAAAGAGCCGCCGATGGTTTTGTTCCAACAGGTGCTC
TGCTCAAGGCGATGCTGATCAATTCTGCAGTGCCTATGGCAGCGTTTGAT
TTCAACAACGGGACGCTACTGCCACTTGGATTGCCACCTGATGTGTATCA
GGGCTATGGACGGATCAAGCTCGCCGACGTGCTGCCTATCAAGAGCCTGG
GGGCGACTACCACGCCGAACCTGTACGTTGTGAATGGAGCCAGTATCAAG
GAGGAAGAAAAGCACGTGTACAAGTTTAGCATCCCCGCCACAGGAAAGAG
TCCGGTCAAGATCACGTTGGTGTGGATCGATCCTGACACAACAGCTAGCT
CTGCGACGACTGTGTTGCATGACCTGGATCTTATGGTATACAGTCAGAAA
GAAGGCTCGTCCTACTTTCCCAACGGTCGAACGAATGCGGACAACGTGAA
TACGGTCGAAAAAGTCGCACTGTACTCGCCCACGCCGGGTGACACCTTGA
CCGTGACAGTGACCGCGACGTCTGTTGCCACTCGGCCCGAGCAGCGATAC
GCTTTGGCGGCTTCCGGGAACTTTGTGTCGGGGGCATGGTACTGTCAGTC
TCCTCGATCGTCCCGTGCTGGGGAGGTGTTTACTACCGAGAACTGCGATC
AGAGTTGCGATAACAACGGCTTTCTGAAGGAGCCTGTGTGTTGCGACGCA
TCAGCTGGGAGCGTGTGCAGTGCCCAAGAAATCGCCGCTGCTGCTGCCGT
TGGTCTGGAATGTGATGCGGCAACTCGGCCCATCGAATGTCCGGCGCCGG
TCCCTGTAGTACCACCGACGAAAGCCCCGACAAGGCGCCCGACAAGGTCT
CCGACGGAAGCCCCGATAAGATCTCCAACGAAGCCTGTCACGGGGGACTG
GTACTGTCAGTTTCCTCGATCAACTCGCAGCAACGATGCTCAGACCATTA
GAAACTGCCTCGTAAGTTGCGACGACAGTGGCTTTCTAAAGAACCCTGTA
TGTTGCCCTCCTCTTACAGTTGGGTCTGTTTGCAATGACGAGGAAGCATC
GGCAGCTCAGGCAAATGGCGTCGCATGCAGCACTGCAGCGCGGCCTGAGG
AATGCGCAGGGGCGCCTGCTCCGAACCCTCCGGCCCCGGCCCCTGCAGCT
CCGTCGCCTGTGCCAGCTGGACGCGGGGCCTGGTACTGCCAGTATCCTCG

Synonyms

Publications