rna3554, rna3554 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3554
Unique Name	rna3554
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1924
Alignment location	CM002461.1:684990..686789 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100419g2.1242.mrna
Orig protein id	gnl\|cribi\|Naga_100419g2.1242
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:684990..686789 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100419g2	gene3424	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3554	rna3554-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27129.1	cds3545	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:684990..686789+
coding sequence from alignment at CM002461.1:684990..686789+

mRNA sequence

>rna3554 ID=rna3554|Name=rna3554|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp
AAAATTTCTGTTTGAGAGACTCATGAATATTCGGCTTTCAGATGCCTTTC
GTTTTCATTTTGTCTCAAACCTTCAACGAACTTCACAGTCACTTCCATCA
TGGATCGGGGTCCAATGCCGCCTCCGCAAAAGCGCCATTCCACATGCGGG
CAAGGCAAAGGGTATTCACATGCGAAGTCACTCATGGCTCCATCAACATC
CCACGTATTTGTCAAGCGACGGAACTTATTCCTGCAGACCTTCGACGAGC
AGGGTGAACTTCAAGAAGAAGAGAGCACAAGTCTACGGCACAACGCTTTC
GAGGTTAAAAACGACTACAGTCAACATTTTCTTCAGACTCGCGAACGACC
CCAGAACTTCATTAGGGATGTAACGGTTGAGGATGGATTTGCTGAATATC
CCAAGCTGGCAAAGTTACTTTCTGCAAAGCAGCACATTGTCGAGACCCGC
AAAACGCCTGCGATGTATGTGAAGGCCGACCTCCGAACATTTGATCTGCG
GAGCCTAGGCACCAAATTTGACATTATATATATTGATCCACCTTGGGAGG
AATACACGCGTCGAGCCGCGCCCTTTGTACTGAATGGCAAGCCGTCTGTG
TGCTCGGAGACATGCGATGCGTCTTTGCAGCTGGACGAGGTATGGGGGCA
CGAAGATTTGGAGTCCCTGCCTATTGACGAAATTGGTGAGTTGCCTAGTT
TTGTGTTCCTGTGGTGCGGTTCAGGGGGGCGCATCACAGAAGGGTCAGCG
CAAGGGGCCTTGCACGTTGAAGATGGTAGGCGTTTGCTTAAGAAGTGGGG
GTATCGGCGATGCGAGGAGATTTGCTGGGTGAAGACGAACAAGCATTGTC
AACACTCTCAGCCAGAATTATCCACCTCCGCAACAAGCTTATTTGTACGT
ACCAAAGAGCATTGCCTTATGGGTATCAAAGGCTCAGTACGTCGTAATCG
AGATGGGCACATAATCCATTGCAACGTCCACACGGATCTTGTAGTAGGAG
AACAACCCATCGACCCGCTTTCCACAGCAAAACCTGAAGAAATTTACACG
ATAATGGAGCAGTTTTGTTTAGGTCGGCGACGTCTGGAGCTGTTTGGATG
CTCGCGTAACATTCGGCCAGGCTGGGTGACAGTTGGTAAGGATGTGCCGG
GCACGACGTATGACGCGAGGACATATTCGAGATTGATGGAAGAGCCGGGC
TTGAATCCAGATGGGACAATGTGTGCTGGTCACTTGGTAGGGTCTACCGT
CCTCATTGAAGATCTTCGACCTAAAACACCTCCACGAGAGCAGCGCGAAC
GAGAAGCGGCCATGGGAATGCTTCGTAAAGCAGTCCTGAGAGGACGAATG
GATTCACTATGCAGGTCCTCGCCCAGGCCCCGTAGCCGCACTGTCCCAAG
TGTCAGCCCCCAATACGTGCAATCGCTCCATTTCAATAAACACCAAAAGC
ATCCTGAGTGGGAGCAGTATGCTCAACAGCAGGCGGTTCAGGGTCAATTT
TGGCATATATACGAGAATGGCTTTCACAATGAGGGTCAATACCAAGGTTT
TGGAATCTACGACGAAACGTCGATAAATCTAAGTTCCTTTGACCACTCCG
AGCATCATCGAGAAGAGCAGCATGTCTCTTTTGTCTCGCCTTTCACGTAT
CCATCCGACCGAAATGGCTTTTTGCCGCCGTTTCCTGTGTCTCAACCTCC
ACCTCCTTTAGCCTCTATGAATACTTCTTTACACGAGCACGTTCTCTCAT
CGCCGACATACGGCTGGAGATCATCCCCCTTATCTTCACCCCATGGACAA
AGCGGGCGGGGGCGAGGGCGAGAACGTTCAGTCTTCCAACGCAAACCATT
TTAAAACACTCAATGTAAAAATTAGGTTGTGGAAAAAAGTGCAATACAGA
CTATGACGCAAATAGATTGTTTCT

protein sequence of rna3554

>rna3554-protein ID=rna3554-protein|Name=rna3554|organism=Nannochloropsis gaditana|type=polypeptide|length=599bp
MHYKPINLSKSNFLICSIHFRRLKNLRAHMAMVGLHRVAHITFAAAMSLL
LASSTSAQTFPGCSSTDMRQLTWVGRGLMNCFSLSLGEVFMFMGGLSSDQ
SIWLDRCSESSDQYQNECFQLLESILQQAASQPGSVPAKVVGVIYQNPPE
VLNCVAEVNNQVGSFSPTCTDGVSLGQITRSSARLAPYVNSIKPWHLPPQ
MEGCAVNDLLNLQLAYLPFIDCLNFNFTQLIEGFGSSSPNMGAQLEDATI
RAGISCLYDPHMTNSDCMYLVILATTKLQGGSWSDMGVYAMRALTDYPQA
CQCVRGASQSAAYQAVSTSCPAHDSLNFLTALEASCAFEPQIQSSLSKAL
NGCSDADVVRAELVGLQILDCMGADGGDLAGSTDELTEARIAQIANCVND
PGYENAECLGLLGSLARIAADAPDSLEAKLVDEMTTDGSEFCACLDRAAH
SPPANDLGAVCEVPFSGVDFLRENKKYCEAIAAVPPAFWATAAAGIVAAA
NAPLSTETATVHSVSTRPGQDTVEISPSSSHRGKDKGNLWGYLPSSSGVL
SYFSDSEATNEQIRRLEEGKDGKFRLVGKPKAEIVEGQMHLRSSAHDED

mRNA from alignment at CM002461.1:684990..686789+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3554 ID=rna3554|Name=rna3554|organism=Nannochloropsis gaditana|type=mRNA|length=1800bp|location=Sequence derived from alignment at CM002461.1:684990..686789+ (Nannochloropsis gaditana)
ATGCACTACAAACCAATAAATCTCAGTAAATCAAACTTTTTAATATGCTC
TATACATTTCAGACGTCTTAAGAATTTAAGGGCGCACATGGCGATGGTTG
GGCTGCATCGTGTTGCCCATATCACTTTTGCCGCCGCAatgtcgctgctg
ctcgcgtcgtccacgtccGCACAAACATTTCCCGGTTGTTCTTCTACAGA
TATGCGTCAGCTTACATGGGTTGGCCGAGGACTGATGAACTGCTTCAGTC
TGTCCCTCGGCGAGGTCTTTATGTTCATGGGTGGCCTATCTTCCGATCAA
AGTATCTGGTTAGACCGGTGCTCTGAGTCTTCCGACCAGTACCAAAATGA
ATGTTTCCAGCTTCTTGAGTCAATACTGCAACAAGCTGCGAGTCAACCAG
GATCTGTGCCTGCTAAAGTGGTGGGAGTCATTTATCAGAATCCCCCCGAG
GTGCTCAATTGCGTTGCTGAAGTTAATAACCAAGTAGGCAGCTTTTCTCC
AACTTGTACAGATGGTGTCAGCCTGGGCCAAATCACAAGATCATCAGCAC
GTTTGGCGCCGTACGTGAACAGCATCAAGCCAtggcacctccctccgcag
ATGGAGGGATGCGCGGTAAATGATCTACTCAACCTGCAGTTAGCCTACTT
GCCCTTCATTGACTGTCTTAATTTCAACTTTACTCAATTGATTGAAGGCT
TCGGCTCGTCTAGTCCTAATATGGGAGCACAACTGGAGGATGCTACCATC
CGTGCCGGTATTAGCTGCCTGTATGACCCGCACATGACCAATTCTGATTG
CATGTATCTCGTTATATTGGCCACCACAAAGCtacaaggaggaagctgga
GCGACATGGGTGTGTACGCTATGCGAGCCCTGACTGACTATCCGCAGGCC
TGTCAATGTGTTCGAGGAGCGAGTCAATCAGCCGCATATCAAGCCGTATC
CACGAGTTGCCCAGCACACGATTCACTTAATTTTCtgacggccttggagg
ctTCTTGTGCATTTGAACCCCAGATCCAGTCTTCGCTGTCTAAAGCACTC
AACGGCTGCTCTGACGCTGATGTAGTGCGTGCTGAGCTAGTTGGCTTACA
AATTTTAGATTGTATGGGTGCTGACGGGGGGGATTTGGCAGGGAGCACAG
ATGAATTGACAGAGGCCCGTATAGCTCAGATAGCGAACTGTGTCAATGAC
CCTGGATATGAGAATGCAGAATGCTTGGGCTTACTTGGCTCCTTGGCAAG
AATCGCAGCTGATGCACCTGATAGCTTGGAAGCGAAACTAGTCGATGAAA
TGACCACAGATGGCTCTGAGTTTTGTGCATGTCTGGATCGGGCTGCGCAC
AGTCCACCTGCAAATGACCTTGGAGCCGTATGTGAGGTACCTTTCTCGGG
CGTAGACTTCCTGCGGGAAAACAAAAAATATTGCGAAGCAATTGCTGCTG
TGCCTCCTGCATTCTGGGCGACAGCCGCTGCAGGGATTGTGGCTGCGGCT
AACGCGCCTCTCTCAACTGAAACCGCAACGGTCCATTCCGTGTCGACTCG
TCCTGGACAGGACACTGTGGAGATTTCGCCTTCATCCTCGCATCGTGGCA
AGGATAAGGGTAATTTGTGGGGTTATTTGCCTTCTTCAAGTGGTGTTTTG
AGCTATTTCTCAGATTCTGAGGCTACCAACGAGCAAATCAGGAGGCTTGA
AGAGGGCAAGGATGGCAAATTTCGCTTGGTTGGTAAGCCAAAAGCTGAGA
TAGTAGAAGGACAAATGCATCTACGGTCCAGCGCTCATGATGAAGATTAA

Coding sequence (CDS) from alignment at CM002461.1:684990..686789+

>rna3554 ID=rna3554|Name=rna3554|organism=Nannochloropsis gaditana|type=CDS|length=1800bp|location=Sequence derived from alignment at CM002461.1:684990..686789+ (Nannochloropsis gaditana)
ATGCACTACAAACCAATAAATCTCAGTAAATCAAACTTTTTAATATGCTC
TATACATTTCAGACGTCTTAAGAATTTAAGGGCGCACATGGCGATGGTTG
GGCTGCATCGTGTTGCCCATATCACTTTTGCCGCCGCAatgtcgctgctg
ctcgcgtcgtccacgtccGCACAAACATTTCCCGGTTGTTCTTCTACAGA
TATGCGTCAGCTTACATGGGTTGGCCGAGGACTGATGAACTGCTTCAGTC
TGTCCCTCGGCGAGGTCTTTATGTTCATGGGTGGCCTATCTTCCGATCAA
AGTATCTGGTTAGACCGGTGCTCTGAGTCTTCCGACCAGTACCAAAATGA
ATGTTTCCAGCTTCTTGAGTCAATACTGCAACAAGCTGCGAGTCAACCAG
GATCTGTGCCTGCTAAAGTGGTGGGAGTCATTTATCAGAATCCCCCCGAG
GTGCTCAATTGCGTTGCTGAAGTTAATAACCAAGTAGGCAGCTTTTCTCC
AACTTGTACAGATGGTGTCAGCCTGGGCCAAATCACAAGATCATCAGCAC
GTTTGGCGCCGTACGTGAACAGCATCAAGCCAtggcacctccctccgcag
ATGGAGGGATGCGCGGTAAATGATCTACTCAACCTGCAGTTAGCCTACTT
GCCCTTCATTGACTGTCTTAATTTCAACTTTACTCAATTGATTGAAGGCT
TCGGCTCGTCTAGTCCTAATATGGGAGCACAACTGGAGGATGCTACCATC
CGTGCCGGTATTAGCTGCCTGTATGACCCGCACATGACCAATTCTGATTG
CATGTATCTCGTTATATTGGCCACCACAAAGCtacaaggaggaagctgga
GCGACATGGGTGTGTACGCTATGCGAGCCCTGACTGACTATCCGCAGGCC
TGTCAATGTGTTCGAGGAGCGAGTCAATCAGCCGCATATCAAGCCGTATC
CACGAGTTGCCCAGCACACGATTCACTTAATTTTCtgacggccttggagg
ctTCTTGTGCATTTGAACCCCAGATCCAGTCTTCGCTGTCTAAAGCACTC
AACGGCTGCTCTGACGCTGATGTAGTGCGTGCTGAGCTAGTTGGCTTACA
AATTTTAGATTGTATGGGTGCTGACGGGGGGGATTTGGCAGGGAGCACAG
ATGAATTGACAGAGGCCCGTATAGCTCAGATAGCGAACTGTGTCAATGAC
CCTGGATATGAGAATGCAGAATGCTTGGGCTTACTTGGCTCCTTGGCAAG
AATCGCAGCTGATGCACCTGATAGCTTGGAAGCGAAACTAGTCGATGAAA
TGACCACAGATGGCTCTGAGTTTTGTGCATGTCTGGATCGGGCTGCGCAC
AGTCCACCTGCAAATGACCTTGGAGCCGTATGTGAGGTACCTTTCTCGGG
CGTAGACTTCCTGCGGGAAAACAAAAAATATTGCGAAGCAATTGCTGCTG
TGCCTCCTGCATTCTGGGCGACAGCCGCTGCAGGGATTGTGGCTGCGGCT
AACGCGCCTCTCTCAACTGAAACCGCAACGGTCCATTCCGTGTCGACTCG
TCCTGGACAGGACACTGTGGAGATTTCGCCTTCATCCTCGCATCGTGGCA
AGGATAAGGGTAATTTGTGGGGTTATTTGCCTTCTTCAAGTGGTGTTTTG
AGCTATTTCTCAGATTCTGAGGCTACCAACGAGCAAATCAGGAGGCTTGA
AGAGGGCAAGGATGGCAAATTTCGCTTGGTTGGTAAGCCAAAAGCTGAGA
TAGTAGAAGGACAAATGCATCTACGGTCCAGCGCTCATGATGAAGATTAA

Synonyms

Publications