rna3553, rna3553 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3553
Unique Name	rna3553
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1614
Alignment location	CM002461.1:682705..684628 -

Link to JBrowse

Properties


Property Name	Value
Product	methyltransferase-like protein 1
Orig transcript id	gnl\|cribi\|Naga_100419g3.1240.mrna
Orig protein id	gnl\|cribi\|Naga_100419g3.1240
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:682705..684628 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100419g3	gene3423	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27127.1	cds3544	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3553	rna3553-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:682705..684628-
coding sequence from alignment at CM002461.1:682705..684628-

mRNA sequence

>rna3553 ID=rna3553|Name=rna3553|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp
CATTAGATGAGCAGATTTGTACCACTTTCCTCAAATATATACATCATAGG
CTGTAAATAGGCATTCGGGAATCTTCTGGCAGGCCCTGGCGTATCACGAG
CTTTCGCAGTGGCAGGAAAATCGTCCGAATCATGTCTTGTGCTATTTCTT
GTGTGAAGCGCGGACTTATGAACGTCTCGCGACGGCAGAGGCTGAATTAC
CAGGCAAATACTACGGAAGACATATTAAGCGGGGGGCGTCGAAGACTCTT
TTCGTCGATGGCGGCCAAGGCAGTTCAAAGCAAAGCTGATAGATACATGC
AACTTGAGGACCTGCACGGAGCGCACAACTACCATCCACTGCCGGTCGTT
CTCTCGCGTGGCCAAGGCGTGCACGTCTGGGACGTGGATAACAACAAATA
CCTGGATTTCTTGTCAGCTTACTCGGCAGTAAATCAAGGGCATTGCCATC
CCAAGATCATTGCCGCGCTGACTGAACAAGCCAGCAAACTAACGTTAGCA
TCGCGCGCGTTTTACACCGATGCCTTGGGCGAATACCAGCAGTTCATTAC
TAATTATTTCGGCTACGACCGGGTACTTCCCATGAATACCGGTGTCGAGG
GCGGCGAGACTGCGGTGAAACTCGCCCGTCGCTGGGGCTATGACGTCAAG
AAGATTCCCCGGGACCAAGCGATGGTGGTTTTCGCCCGCGGCAATTTCTG
GGGTCGGACGCTGGGGGCGATATCCTCCTCAACAGATCCTTCCTCCCGAA
AAGGCTTTGGGCCGTTCATTCCGGGGTTCGACCTCATCGACTACGACGAT
CCCGCCGCATTTGAGGCCCTTTGTGAAAGGAAAGGAAGGCGGATCGCAGC
TTTTATGGTGGAGCCCATTCAGGGAGAAGCCGGGGTTGTTGTTCCGCAAG
AAAACTATTTGAAAAAGATCAAAGCTATTTGTGAAAAACATAACATCCTC
CTCATTGCCGACGAGGTTCAAACCGGCTTAGGAAGGACGGGGAAGCTGCT
TGCCTCTGAATGGGACTCGACCAAGCCCGATATATTGGTTCTAGGAAAGG
CGCTGTCAGGGGGCGTCCTGCCCGTTTCTGCCGTTCTGGCAAGTAATGAA
GTAATGCTCACCATCCAGCCGGGAGAGCATGGATCGACATTTGGTGGGAA
TCCACTGGCGTGTAAAGTCGCAGCGGCAGCTCTAGCCGTCCTGCAGGATG
AAAAGCTGGTCGAGAATTCTATGATCATGGGAGAACGATTTCGATCGGGA
TTGAAAGCCATCCCCGCCAACGGGTTGATCGAATCCGTGCGGGGAAGAGG
ACTCATGAATGCAATGGTGATAGCGGATCGGAAAGGTGATGGTGGTCCGG
CTTGGGACGTGTGCTTGATGCTGAAAGAGTACGGCATGTTGGCGAAGCCA
ACACACGGGAACATAATTAGACTTGCCCCACCCTTGTGCATTGATGCGGA
TCAGGTCGACCAAGCGCTAGATATTGTGGAGTCAGCGATAAAAAAATTCT
GTTAAATGTCTGGTAGGGGCGGTTACGGAAAAGAAAGAAGTGCATAGGGG
ATGCGTACGCAATAGCTAGCTGATTTACGATAGTGAGGTTGAAGAAACAA
TCTATTTGCGTCAT

protein sequence of rna3553

>rna3553-protein ID=rna3553-protein|Name=rna3553|organism=Nannochloropsis gaditana|type=polypeptide|length=584bp
MDRGPMPPPQKRHSTCGQGKGYSHAKSLMAPSTSHVFVKRRNLFLQTFDE
QGELQEEESTSLRHNAFEVKNDYSQHFLQTRERPQNFIRDVTVEDGFAEY
PKLAKLLSAKQHIVETRKTPAMYVKADLRTFDLRSLGTKFDIIYIDPPWE
EYTRRAAPFVLNGKPSVCSETCDASLQLDEVWGHEDLESLPIDEIGELPS
FVFLWCGSGGRITEGSAQGALHVEDGRRLLKKWGYRRCEEICWVKTNKHC
QHSQPELSTSATSLFVRTKEHCLMGIKGSVRRNRDGHIIHCNVHTDLVVG
EQPIDPLSTAKPEEIYTIMEQFCLGRRRLELFGCSRNIRPGWVTVGKDVP
GTTYDARTYSRLMEEPGLNPDGTMCAGHLVGSTVLIEDLRPKTPPREQRE
REAAMGMLRKAVLRGRMDSLCRSSPRPRSRTVPSVSPQYVQSLHFNKHQK
HPEWEQYAQQQAVQGQFWHIYENGFHNEGQYQGFGIYDETSINLSSFDHS
EHHREEQHVSFVSPFTYPSDRNGFLPPFPVSQPPPPLASMNTSLHEHVLS
SPTYGWRSSPLSSPHGQSGRGRGRERSVFQRKPF

mRNA from alignment at CM002461.1:682705..684628-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3553 ID=rna3553|Name=rna3553|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp|location=Sequence derived from alignment at CM002461.1:682705..684628- (Nannochloropsis gaditana)
AAAATTTCTGTTTGAGAGACTCATGAATATTCGGCTTTCAGATGCCTTTC
GTTTTCATTTTGTCTCAAACCTTCAACGAACTTCACAGTCACTTCCATCA
TGGATCGGGGTCCAATGCCGCCTCCGCAAAAGCGCCATTCCACATGCGGG
CAAGGCAAAGGGTATTCACATGCGAAGTCACTCATGGCTCCATCAACATC
CCACGTATTTGTCAAGCGACGGAACTTATTCCTGCAGACCTTCGACGAGC
AGGGTGAACTTCAAGAAGAAGAGAGCACAAGTCTACGGCACAACGCTTTC
GAGGTTAAAAACGACTACAGTCAACATTTTCTTCAGACTCGCGAACGACC
CCAGAACTTCATTAGGGATGTAACGGTTGAGGATGGATTTGCTGAATATC
CCAAGCTGGCAAAGTTACTTTCTGCAAAGCAGCACATTGTCGAGACCCGC
AAAACGCCTGCGATGTATGTGAAGGCCGACCTCCGAACATTTGATCTGCG
GAGCCTAGGCACCAAATTTGACATTATATATATTGATCCACCTTGGGAGG
AATACACGCGTCGAGCCGCGCCCTTTGTACTGAATGGCAAGCCGTCTGTG
TGCTCGGAGACATGCGATGCGTCTTTGCAGCTGGACGAGGTATGGGGGCA
CGAAGATTTGGAGTCCCTGCCTATTGACGAAATTGGTGAGTTGCCTAGTT
TTGTGTTCCTGTGGTGCGGTTCAGGGGGGCGCATCACAGAAGGGTCAGCG
CAAGGGGCCTTGCACGTTGAAGATGGTAGGCGTTTGCTTAAGAAGTGGGG
GTATCGGCGATGCGAGGAGATTTGCTGGGTGAAGACGAACAAGCATTGTC
AACACTCTCAGCCAGAATTATCCACCTCCGCAACAAGCTTATTTGTACGT
ACCAAAGAGCATTGCCTTATGGGTATCAAAGGCTCAGTACGTCGTAATCG
AGATGGGCACATAATCCATTGCAACGTCCACACGGATCTTGTAGTAGGAG
AACAACCCATCGACCCGCTTTCCACAGCAAAACCTGAAGAAATTTACACG
ATAATGGAGCAGTTTTGTTTAGGTCGGCGACGTCTGGAGCTGTTTGGATG
CTCGCGTAACATTCGGCCAGGCTGGGTGACAGTTGGTAAGGATGTGCCGG
GCACGACGTATGACGCGAGGACATATTCGAGATTGATGGAAGAGCCGGGC
TTGAATCCAGATGGGACAATGTGTGCTGGTCACTTGGTAGGGTCTACCGT
CCTCATTGAAGATCTTCGACCTAAAACACCTCCACGAGAGCAGCGCGAAC
GAGAAGCGGCCATGGGAATGCTTCGTAAAGCAGTCCTGAGAGGACGAATG
GATTCACTATGCAGGTCCTCGCCCAGGCCCCGTAGCCGCACTGTCCCAAG
TGTCAGCCCCCAATACGTGCAATCGCTCCATTTCAATAAACACCAAAAGC
ATCCTGAGTGGGAGCAGTATGCTCAACAGCAGGCGGTTCAGGGTCAATTT
TGGCATATATACGAGAATGGCTTTCACAATGAGGGTCAATACCAAGGTTT
TGGAATCTACGACGAAACGTCGATAAATCTAAGTTCCTTTGACCACTCCG
AGCATCATCGAGAAGAGCAGCATGTCTCTTTTGTCTCGCCTTTCACGTAT
CCATCCGACCGAAATGGCTTTTTGCCGCCGTTTCCTGTGTCTCAACCTCC
ACCTCCTTTAGCCTCTATGAATACTTCTTTACACGAGCACGTTCTCTCAT
CGCCGACATACGGCTGGAGATCATCCCCCTTATCTTCACCCCATGGACAA
AGCGGGCGGGGGCGAGGGCGAGAACGTTCAGTCTTCCAACGCAAACCATT
TTAAAACACTCAATGTAAAAATTAGGTTGTGGAAAAAAGTGCAATACAGA
CTATGACGCAAATAGATTGTTTCT

Coding sequence (CDS) from alignment at CM002461.1:682705..684628-

>rna3553 ID=rna3553|Name=rna3553|organism=Nannochloropsis gaditana|type=CDS|length=1755bp|location=Sequence derived from alignment at CM002461.1:682705..684628- (Nannochloropsis gaditana)
ATGGATCGGGGTCCAATGCCGCCTCCGCAAAAGCGCCATTCCACATGCGG
GCAAGGCAAAGGGTATTCACATGCGAAGTCACTCATGGCTCCATCAACAT
CCCACGTATTTGTCAAGCGACGGAACTTATTCCTGCAGACCTTCGACGAG
CAGGGTGAACTTCAAGAAGAAGAGAGCACAAGTCTACGGCACAACGCTTT
CGAGGTTAAAAACGACTACAGTCAACATTTTCTTCAGACTCGCGAACGAC
CCCAGAACTTCATTAGGGATGTAACGGTTGAGGATGGATTTGCTGAATAT
CCCAAGCTGGCAAAGTTACTTTCTGCAAAGCAGCACATTGTCGAGACCCG
CAAAACGCCTGCGATGTATGTGAAGGCCGACCTCCGAACATTTGATCTGC
GGAGCCTAGGCACCAAATTTGACATTATATATATTGATCCACCTTGGGAG
GAATACACGCGTCGAGCCGCGCCCTTTGTACTGAATGGCAAGCCGTCTGT
GTGCTCGGAGACATGCGATGCGTCTTTGCAGCTGGACGAGGTATGGGGGC
ACGAAGATTTGGAGTCCCTGCCTATTGACGAAATTGGTGAGTTGCCTAGT
TTTGTGTTCCTGTGGTGCGGTTCAGGGGGGCGCATCACAGAAGGGTCAGC
GCAAGGGGCCTTGCACGTTGAAGATGGTAGGCGTTTGCTTAAGAAGTGGG
GGTATCGGCGATGCGAGGAGATTTGCTGGGTGAAGACGAACAAGCATTGT
CAACACTCTCAGCCAGAATTATCCACCTCCGCAACAAGCTTATTTGTACG
TACCAAAGAGCATTGCCTTATGGGTATCAAAGGCTCAGTACGTCGTAATC
GAGATGGGCACATAATCCATTGCAACGTCCACACGGATCTTGTAGTAGGA
GAACAACCCATCGACCCGCTTTCCACAGCAAAACCTGAAGAAATTTACAC
GATAATGGAGCAGTTTTGTTTAGGTCGGCGACGTCTGGAGCTGTTTGGAT
GCTCGCGTAACATTCGGCCAGGCTGGGTGACAGTTGGTAAGGATGTGCCG
GGCACGACGTATGACGCGAGGACATATTCGAGATTGATGGAAGAGCCGGG
CTTGAATCCAGATGGGACAATGTGTGCTGGTCACTTGGTAGGGTCTACCG
TCCTCATTGAAGATCTTCGACCTAAAACACCTCCACGAGAGCAGCGCGAA
CGAGAAGCGGCCATGGGAATGCTTCGTAAAGCAGTCCTGAGAGGACGAAT
GGATTCACTATGCAGGTCCTCGCCCAGGCCCCGTAGCCGCACTGTCCCAA
GTGTCAGCCCCCAATACGTGCAATCGCTCCATTTCAATAAACACCAAAAG
CATCCTGAGTGGGAGCAGTATGCTCAACAGCAGGCGGTTCAGGGTCAATT
TTGGCATATATACGAGAATGGCTTTCACAATGAGGGTCAATACCAAGGTT
TTGGAATCTACGACGAAACGTCGATAAATCTAAGTTCCTTTGACCACTCC
GAGCATCATCGAGAAGAGCAGCATGTCTCTTTTGTCTCGCCTTTCACGTA
TCCATCCGACCGAAATGGCTTTTTGCCGCCGTTTCCTGTGTCTCAACCTC
CACCTCCTTTAGCCTCTATGAATACTTCTTTACACGAGCACGTTCTCTCA
TCGCCGACATACGGCTGGAGATCATCCCCCTTATCTTCACCCCATGGACA
AAGCGGGCGGGGGCGAGGGCGAGAACGTTCAGTCTTCCAACGCAAACCAT
TTTAA

Synonyms

Publications