rna3553, rna3553 (mRNA) Nannochloropsis gaditana

Overview
Namerna3553
Unique Namerna3553
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1614
Alignment locationCM002461.1:682705..684628 -

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Properties
Property NameValue
Productmethyltransferase-like protein 1
Orig transcript idgnl|cribi|Naga_100419g3.1240.mrna
Orig protein idgnl|cribi|Naga_100419g3.1240
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:682705..684628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100419g3gene3423Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27127.1cds3544Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3553rna3553-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3553 ID=rna3553|Name=rna3553|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp
CATTAGATGAGCAGATTTGTACCACTTTCCTCAAATATATACATCATAGG
CTGTAAATAGGCATTCGGGAATCTTCTGGCAGGCCCTGGCGTATCACGAG
CTTTCGCAGTGGCAGGAAAATCGTCCGAATCATGTCTTGTGCTATTTCTT
GTGTGAAGCGCGGACTTATGAACGTCTCGCGACGGCAGAGGCTGAATTAC
CAGGCAAATACTACGGAAGACATATTAAGCGGGGGGCGTCGAAGACTCTT
TTCGTCGATGGCGGCCAAGGCAGTTCAAAGCAAAGCTGATAGATACATGC
AACTTGAGGACCTGCACGGAGCGCACAACTACCATCCACTGCCGGTCGTT
CTCTCGCGTGGCCAAGGCGTGCACGTCTGGGACGTGGATAACAACAAATA
CCTGGATTTCTTGTCAGCTTACTCGGCAGTAAATCAAGGGCATTGCCATC
CCAAGATCATTGCCGCGCTGACTGAACAAGCCAGCAAACTAACGTTAGCA
TCGCGCGCGTTTTACACCGATGCCTTGGGCGAATACCAGCAGTTCATTAC
TAATTATTTCGGCTACGACCGGGTACTTCCCATGAATACCGGTGTCGAGG
GCGGCGAGACTGCGGTGAAACTCGCCCGTCGCTGGGGCTATGACGTCAAG
AAGATTCCCCGGGACCAAGCGATGGTGGTTTTCGCCCGCGGCAATTTCTG
GGGTCGGACGCTGGGGGCGATATCCTCCTCAACAGATCCTTCCTCCCGAA
AAGGCTTTGGGCCGTTCATTCCGGGGTTCGACCTCATCGACTACGACGAT
CCCGCCGCATTTGAGGCCCTTTGTGAAAGGAAAGGAAGGCGGATCGCAGC
TTTTATGGTGGAGCCCATTCAGGGAGAAGCCGGGGTTGTTGTTCCGCAAG
AAAACTATTTGAAAAAGATCAAAGCTATTTGTGAAAAACATAACATCCTC
CTCATTGCCGACGAGGTTCAAACCGGCTTAGGAAGGACGGGGAAGCTGCT
TGCCTCTGAATGGGACTCGACCAAGCCCGATATATTGGTTCTAGGAAAGG
CGCTGTCAGGGGGCGTCCTGCCCGTTTCTGCCGTTCTGGCAAGTAATGAA
GTAATGCTCACCATCCAGCCGGGAGAGCATGGATCGACATTTGGTGGGAA
TCCACTGGCGTGTAAAGTCGCAGCGGCAGCTCTAGCCGTCCTGCAGGATG
AAAAGCTGGTCGAGAATTCTATGATCATGGGAGAACGATTTCGATCGGGA
TTGAAAGCCATCCCCGCCAACGGGTTGATCGAATCCGTGCGGGGAAGAGG
ACTCATGAATGCAATGGTGATAGCGGATCGGAAAGGTGATGGTGGTCCGG
CTTGGGACGTGTGCTTGATGCTGAAAGAGTACGGCATGTTGGCGAAGCCA
ACACACGGGAACATAATTAGACTTGCCCCACCCTTGTGCATTGATGCGGA
TCAGGTCGACCAAGCGCTAGATATTGTGGAGTCAGCGATAAAAAAATTCT
GTTAAATGTCTGGTAGGGGCGGTTACGGAAAAGAAAGAAGTGCATAGGGG
ATGCGTACGCAATAGCTAGCTGATTTACGATAGTGAGGTTGAAGAAACAA
TCTATTTGCGTCAT
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protein sequence of rna3553

>rna3553-protein ID=rna3553-protein|Name=rna3553|organism=Nannochloropsis gaditana|type=polypeptide|length=584bp
MDRGPMPPPQKRHSTCGQGKGYSHAKSLMAPSTSHVFVKRRNLFLQTFDE
QGELQEEESTSLRHNAFEVKNDYSQHFLQTRERPQNFIRDVTVEDGFAEY
PKLAKLLSAKQHIVETRKTPAMYVKADLRTFDLRSLGTKFDIIYIDPPWE
EYTRRAAPFVLNGKPSVCSETCDASLQLDEVWGHEDLESLPIDEIGELPS
FVFLWCGSGGRITEGSAQGALHVEDGRRLLKKWGYRRCEEICWVKTNKHC
QHSQPELSTSATSLFVRTKEHCLMGIKGSVRRNRDGHIIHCNVHTDLVVG
EQPIDPLSTAKPEEIYTIMEQFCLGRRRLELFGCSRNIRPGWVTVGKDVP
GTTYDARTYSRLMEEPGLNPDGTMCAGHLVGSTVLIEDLRPKTPPREQRE
REAAMGMLRKAVLRGRMDSLCRSSPRPRSRTVPSVSPQYVQSLHFNKHQK
HPEWEQYAQQQAVQGQFWHIYENGFHNEGQYQGFGIYDETSINLSSFDHS
EHHREEQHVSFVSPFTYPSDRNGFLPPFPVSQPPPPLASMNTSLHEHVLS
SPTYGWRSSPLSSPHGQSGRGRGRERSVFQRKPF
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mRNA from alignment at CM002461.1:682705..684628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3553 ID=rna3553|Name=rna3553|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp|location=Sequence derived from alignment at CM002461.1:682705..684628- (Nannochloropsis gaditana)
AAAATTTCTGTTTGAGAGACTCATGAATATTCGGCTTTCAGATGCCTTTC GTTTTCATTTTGTCTCAAACCTTCAACGAACTTCACAGTCACTTCCATCA TGGATCGGGGTCCAATGCCGCCTCCGCAAAAGCGCCATTCCACATGCGGG CAAGGCAAAGGGTATTCACATGCGAAGTCACTCATGGCTCCATCAACATC CCACGTATTTGTCAAGCGACGGAACTTATTCCTGCAGACCTTCGACGAGC AGGGTGAACTTCAAGAAGAAGAGAGCACAAGTCTACGGCACAACGCTTTC GAGGTTAAAAACGACTACAGTCAACATTTTCTTCAGACTCGCGAACGACC CCAGAACTTCATTAGGGATGTAACGGTTGAGGATGGATTTGCTGAATATC CCAAGCTGGCAAAGTTACTTTCTGCAAAGCAGCACATTGTCGAGACCCGC AAAACGCCTGCGATGTATGTGAAGGCCGACCTCCGAACATTTGATCTGCG GAGCCTAGGCACCAAATTTGACATTATATATATTGATCCACCTTGGGAGG AATACACGCGTCGAGCCGCGCCCTTTGTACTGAATGGCAAGCCGTCTGTG TGCTCGGAGACATGCGATGCGTCTTTGCAGCTGGACGAGGTATGGGGGCA CGAAGATTTGGAGTCCCTGCCTATTGACGAAATTGGTGAGTTGCCTAGTT TTGTGTTCCTGTGGTGCGGTTCAGGGGGGCGCATCACAGAAGGGTCAGCG CAAGGGGCCTTGCACGTTGAAGATGGTAGGCGTTTGCTTAAGAAGTGGGG GTATCGGCGATGCGAGGAGATTTGCTGGGTGAAGACGAACAAGCATTGTC AACACTCTCAGCCAGAATTATCCACCTCCGCAACAAGCTTATTTGTACGT ACCAAAGAGCATTGCCTTATGGGTATCAAAGGCTCAGTACGTCGTAATCG AGATGGGCACATAATCCATTGCAACGTCCACACGGATCTTGTAGTAGGAG AACAACCCATCGACCCGCTTTCCACAGCAAAACCTGAAGAAATTTACACG ATAATGGAGCAGTTTTGTTTAGGTCGGCGACGTCTGGAGCTGTTTGGATG CTCGCGTAACATTCGGCCAGGCTGGGTGACAGTTGGTAAGGATGTGCCGG GCACGACGTATGACGCGAGGACATATTCGAGATTGATGGAAGAGCCGGGC TTGAATCCAGATGGGACAATGTGTGCTGGTCACTTGGTAGGGTCTACCGT CCTCATTGAAGATCTTCGACCTAAAACACCTCCACGAGAGCAGCGCGAAC GAGAAGCGGCCATGGGAATGCTTCGTAAAGCAGTCCTGAGAGGACGAATG GATTCACTATGCAGGTCCTCGCCCAGGCCCCGTAGCCGCACTGTCCCAAG TGTCAGCCCCCAATACGTGCAATCGCTCCATTTCAATAAACACCAAAAGC ATCCTGAGTGGGAGCAGTATGCTCAACAGCAGGCGGTTCAGGGTCAATTT TGGCATATATACGAGAATGGCTTTCACAATGAGGGTCAATACCAAGGTTT TGGAATCTACGACGAAACGTCGATAAATCTAAGTTCCTTTGACCACTCCG AGCATCATCGAGAAGAGCAGCATGTCTCTTTTGTCTCGCCTTTCACGTAT CCATCCGACCGAAATGGCTTTTTGCCGCCGTTTCCTGTGTCTCAACCTCC ACCTCCTTTAGCCTCTATGAATACTTCTTTACACGAGCACGTTCTCTCAT CGCCGACATACGGCTGGAGATCATCCCCCTTATCTTCACCCCATGGACAA AGCGGGCGGGGGCGAGGGCGAGAACGTTCAGTCTTCCAACGCAAACCATT TTAAAACACTCAATGTAAAAATTAGGTTGTGGAAAAAAGTGCAATACAGA CTATGACGCAAATAGATTGTTTCT
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Coding sequence (CDS) from alignment at CM002461.1:682705..684628-

>rna3553 ID=rna3553|Name=rna3553|organism=Nannochloropsis gaditana|type=CDS|length=1755bp|location=Sequence derived from alignment at CM002461.1:682705..684628- (Nannochloropsis gaditana)
ATGGATCGGGGTCCAATGCCGCCTCCGCAAAAGCGCCATTCCACATGCGG
GCAAGGCAAAGGGTATTCACATGCGAAGTCACTCATGGCTCCATCAACAT
CCCACGTATTTGTCAAGCGACGGAACTTATTCCTGCAGACCTTCGACGAG
CAGGGTGAACTTCAAGAAGAAGAGAGCACAAGTCTACGGCACAACGCTTT
CGAGGTTAAAAACGACTACAGTCAACATTTTCTTCAGACTCGCGAACGAC
CCCAGAACTTCATTAGGGATGTAACGGTTGAGGATGGATTTGCTGAATAT
CCCAAGCTGGCAAAGTTACTTTCTGCAAAGCAGCACATTGTCGAGACCCG
CAAAACGCCTGCGATGTATGTGAAGGCCGACCTCCGAACATTTGATCTGC
GGAGCCTAGGCACCAAATTTGACATTATATATATTGATCCACCTTGGGAG
GAATACACGCGTCGAGCCGCGCCCTTTGTACTGAATGGCAAGCCGTCTGT
GTGCTCGGAGACATGCGATGCGTCTTTGCAGCTGGACGAGGTATGGGGGC
ACGAAGATTTGGAGTCCCTGCCTATTGACGAAATTGGTGAGTTGCCTAGT
TTTGTGTTCCTGTGGTGCGGTTCAGGGGGGCGCATCACAGAAGGGTCAGC
GCAAGGGGCCTTGCACGTTGAAGATGGTAGGCGTTTGCTTAAGAAGTGGG
GGTATCGGCGATGCGAGGAGATTTGCTGGGTGAAGACGAACAAGCATTGT
CAACACTCTCAGCCAGAATTATCCACCTCCGCAACAAGCTTATTTGTACG
TACCAAAGAGCATTGCCTTATGGGTATCAAAGGCTCAGTACGTCGTAATC
GAGATGGGCACATAATCCATTGCAACGTCCACACGGATCTTGTAGTAGGA
GAACAACCCATCGACCCGCTTTCCACAGCAAAACCTGAAGAAATTTACAC
GATAATGGAGCAGTTTTGTTTAGGTCGGCGACGTCTGGAGCTGTTTGGAT
GCTCGCGTAACATTCGGCCAGGCTGGGTGACAGTTGGTAAGGATGTGCCG
GGCACGACGTATGACGCGAGGACATATTCGAGATTGATGGAAGAGCCGGG
CTTGAATCCAGATGGGACAATGTGTGCTGGTCACTTGGTAGGGTCTACCG
TCCTCATTGAAGATCTTCGACCTAAAACACCTCCACGAGAGCAGCGCGAA
CGAGAAGCGGCCATGGGAATGCTTCGTAAAGCAGTCCTGAGAGGACGAAT
GGATTCACTATGCAGGTCCTCGCCCAGGCCCCGTAGCCGCACTGTCCCAA
GTGTCAGCCCCCAATACGTGCAATCGCTCCATTTCAATAAACACCAAAAG
CATCCTGAGTGGGAGCAGTATGCTCAACAGCAGGCGGTTCAGGGTCAATT
TTGGCATATATACGAGAATGGCTTTCACAATGAGGGTCAATACCAAGGTT
TTGGAATCTACGACGAAACGTCGATAAATCTAAGTTCCTTTGACCACTCC
GAGCATCATCGAGAAGAGCAGCATGTCTCTTTTGTCTCGCCTTTCACGTA
TCCATCCGACCGAAATGGCTTTTTGCCGCCGTTTCCTGTGTCTCAACCTC
CACCTCCTTTAGCCTCTATGAATACTTCTTTACACGAGCACGTTCTCTCA
TCGCCGACATACGGCTGGAGATCATCCCCCTTATCTTCACCCCATGGACA
AAGCGGGCGGGGGCGAGGGCGAGAACGTTCAGTCTTCCAACGCAAACCAT
TTTAA
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Synonyms
Publications