rna3552, rna3552 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3552
Unique Name	rna3552
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1122
Alignment location	CM002461.1:680658..682726 +

Link to JBrowse

Properties


Property Name	Value
Product	ornithine aminotransferase
Orig transcript id	gnl\|cribi\|Naga_100419g4.1244.mrna
Orig protein id	gnl\|cribi\|Naga_100419g4.1244
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:680658..682726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100419g4	gene3422	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3552	rna3552-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27131.1	cds3543	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:680658..682726+
coding sequence from alignment at CM002461.1:680658..682726+

mRNA sequence

>rna3552 ID=rna3552|Name=rna3552|organism=Nannochloropsis gaditana|type=mRNA|length=1122bp
ATGATAAGTGCAAAGCGTTTTAACATTGGCAGCGTTTTTCGATTTGTAGC
ATTAAATCACTTCAAGAGGGCCTCACAGGCTCCTTCATATAGATTTCAGA
CCATGTCGATGTCCAAAAGCAGCAAGATGTTGAACTACATCAATTACCGG
ATGAGAGTGACTATTCAGGACAATCGTACACTCGTGGGCACCTTCATGGC
TTTCGACCGGCACATGAATCTGGTGTTAGGTGACTGCGAAGAGTATCGGA
AAGTAAAAAACAAGAAAGGAAGTGGAGGAAGCGGCCCTACCGCGATTGTG
GAGGAAAAGGAGGAAAAGCGCATGCTGGGGCTTGTCCTCCTTCGCGGAGA
GAATGTGGTGTCCCTGACGGTGGAAGGTCCGCCGCCCCCCGATGAAGAGG
CGAAAGCCACGCCGGGGGGCCCGGGCATGGGCCGGGCGGCAGGCAGGGGC
ATCGCCGTGGGAGCCCCAGTGATGGGAGCACCTGTAGGGCTGGCGGGGCC
TGTCCGTGGAGTGGGAGGCCCCGCGCAATCGCTGATGACTCCTGCGGCAG
AGGCCTCTCTGAGCAGGGCGAGACTTTCGATGGCGCGTCCGGTGCTCGGC
TTCCAAAAGCTTGAGCACCGTCCATGGAGGCCCTATCAGTTCTACTCGCC
CAGAGCAATGCGTTGCCTACGCTCGTCTTCACGCGCGGACTCATTGATCG
TGTTCGATTGCGTTAATCTGAACGGGCCACAGGTTGGGCCGGCTCTGTCG
GCGCCCCTCAGGGCTTCCCTCCCCGTGGCCTCCCCCCTCCGGCTCCCGGC
ATGGGTTTTCCTCCTCGCGGCGCCCCCGGTATGGGTATGGCCGCACCGCC
GGGCTATCCCCCGGCAGGCGGGCCAGGCGGGTTGCCTCCCGGCCCTCCGA
TGCCGCCGCCGGGCCCGCCGCCAGGCATGCCCCCACGGGCCTTACCGCCG
CGCTGAGGGGCCTCTCCCCGAGGGCGGGAGGGCGGATGGAAGGGGCGACA
GGAAGGGGGGGAGGGCTAGATGGGGAAGCAGACTTGATTGTGAGAAGTAT
TGTCTCGGAAGGCACGGCGGAGGAAAGAGAAGGACGGGCTCTCGCGGCGT
ACGCGAGTGCGAAAACTATTAA

protein sequence of rna3552

>rna3552-protein ID=rna3552-protein|Name=rna3552|organism=Nannochloropsis gaditana|type=polypeptide|length=457bp
MSCAISCVKRGLMNVSRRQRLNYQANTTEDILSGGRRRLFSSMAAKAVQS
KADRYMQLEDLHGAHNYHPLPVVLSRGQGVHVWDVDNNKYLDFLSAYSAV
NQGHCHPKIIAALTEQASKLTLASRAFYTDALGEYQQFITNYFGYDRVLP
MNTGVEGGETAVKLARRWGYDVKKIPRDQAMVVFARGNFWGRTLGAISSS
TDPSSRKGFGPFIPGFDLIDYDDPAAFEALCERKGRRIAAFMVEPIQGEA
GVVVPQENYLKKIKAICEKHNILLIADEVQTGLGRTGKLLASEWDSTKPD
ILVLGKALSGGVLPVSAVLASNEVMLTIQPGEHGSTFGGNPLACKVAAAA
LAVLQDEKLVENSMIMGERFRSGLKAIPANGLIESVRGRGLMNAMVIADR
KGDGGPAWDVCLMLKEYGMLAKPTHGNIIRLAPPLCIDADQVDQALDIVE
SAIKKFC

mRNA from alignment at CM002461.1:680658..682726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3552 ID=rna3552|Name=rna3552|organism=Nannochloropsis gaditana|type=mRNA|length=2069bp|location=Sequence derived from alignment at CM002461.1:680658..682726+ (Nannochloropsis gaditana)
CATTAGATGAGCAGATTTGTACCACTTTCCTCAAATATATACATCATAGG
CTGTAAATAGGCATTCGGGAATCTTCTGGCAGGCCCTGGCGTATCACGAG
CTTTCGCAGTGGCAGGAAAATCGTCCGAATCATGTCTTGTGCTATTTCTT
GTGTGAAGCGCGGACTTATGAACGTCTCGCGACGGCAGAGGCTGAATTAC
CAGGCAAATACTACGGAAGACATATTAAGCGGGGGGCGTCGAAGACTCTT
TTCGTCgatggcggccaaggcagTTCAAAGCAAAGCTGATAGATACATGC
AACTTGAGGTAAAGTCAGCTCTTCGTAGTTGGGTTTAGGGTTTGCTCTTC
ATGGAGGCCATTACCGCAAATGGTCAGTTACACGCACAAACAGACATGTG
GGGGGGAAGTAGAAGTAAGATGATGCATCTCGTTGGAAGTTTTTGCATGA
CATCGCATCAAGAGAACGAGTATAGACCAAGGAATCCTACAAGCTTCTTT
GTCCTTGATTTATGTGTGTGCCGCATAATTCGTACCAGGCTGCCACGTCT
AGCTTATGCTTAAATGTAAAACCTAATGTATGTATTGATGTGGGATCTCA
CACATTCTCATTTCCGTCCACCATGCGTTACCGCAGGACCTGCACGGAGC
GCACAACTACCATCCACTGCCGGTCGTTCTCTcgcgtggccaaggcgtgC
ACGTCTGGGACGTGGATAACAACAAATACCTGGATTTCTTGTCAGCTTAC
TCGGCAGTAAATCAAGGGCATTGCCATCCCAAGATCATTGCCGCGCTGAC
TGAACAAGCCAGCAAACTAACGTTAGCATCGCGCGCGTTTTACACCGATG
CCTTGGGCGAATACCAGCAGTTCATTACTAATTATTTCGGCTACGACCGG
GTACTTCCCATGAATACCGGTGTCGAGGGCGGCGAGACTGCGGTGGTAAG
CTTCGATAAGGGAAAGGGCTTTCGCTTTTCTCTGTCAGGCTCTACGCACA
AATCTGTATCAACTTTTTCTAATACATTGACATCGTGATAATAAGCTGTG
GTTTATCACCCATATTGATCAGAAACTCGCCCGTCGCTGGGGCTATGACG
TCAAGAAGATTCCCCGGGACCAAGCGATGGTGGTTTTCGCCCGCGGCAAT
TTCTGGGGTCGGACGCTGGGGGCGATATCCTCCTCAACagatccttcctc
ccgaaaAGGCTTTGGGCCGTTCATTCCGGGGTTCGACCTCATCGACTACG
ACGATCCCGCCGCATTTGAGGCCCTttgtgaaaggaaaggaaggcggaTC
GCAGCTTTTATGGTGGAGCCCATTCAGGGAGAAGCCGGGGTTGTTGTTCC
GCAAGAAAACTATTTGAAAAAGATCAAAGCTATTTGTGAAAAACATAACA
TCCTCCTCATTGCCGACGAGGTTCAAACCGGCttaggaaggacggggaag
ctGCTTGCCTCTGAATGGGACTCGACCAAGCCCGATATATTGGTTCTAGG
AAAGGCGCTGTCAGGGGGCGTCCTGCCCGTTTCTGCCGTTCTGGCAAGTA
ATGAAGTAATGCTCACCATCCAGCCGGGAGAGCATGGATCGACATTTGGT
GGGAATCCACTGGCGTGTAAAGTCGCAGCGGCAGCTCTAGCCGTCCTGCA
GGATGAAAAGCTGGTCGAGAATTCTATGATCATGGGAGAACGATTTCGAT
CGGGATTGAAAGCCATCCCCGCCAACGGGTTGATCGAATCCgtgcgggga
agaggactcATGAATGCAATGGTGATAGCGGATCGGAAAGGTGATGGTGG
TCCGGCTTGGGACGTGTGCTTGATGCTGAAAGAGTACGGCATGTTGGCGA
AGCCAACACACGGGAACATAATTAGACTTGCCCCACCCTTGTGCATTGAT
GCGGATCAGGTCGACCAAGCGCTAGATATTGTGGAGTCAGCGATAAAAAA
ATTCTGTTAAATGTCTGGTAGGGGCGGTTacggaaaagaaagaagtgCAT
AGGGGATGCGTACGCAATAGCTAGCTGATTTACGATAGTGAGGTTGAAGA
AACAATCTATTTGCGTCAT

Coding sequence (CDS) from alignment at CM002461.1:680658..682726+

>rna3552 ID=rna3552|Name=rna3552|organism=Nannochloropsis gaditana|type=CDS|length=4122bp|location=Sequence derived from alignment at CM002461.1:680658..682726+ (Nannochloropsis gaditana)
ATGTCTTGTGCTATTTCTTGTGTGAAGCGCGGACTTATGAACGTCTCGCG
ACGGCAGAGGCTGAATTACCAGGCAAATACTACGGAAGACATATTAAGCG
GGGGGCGTCGAAGACTCTTTTCGTCgatggcggccaaggcagTTCAAAGC
AAAGCTGATAGATACATGCAACTTGAGGACCTGCACGGAGCGCACAACTA
CCATCCACTGCCGGTCGTTCTCTcgcgtggccaaggcgtgCACGTCTGGG
ACGTGGATAACAACAAATACCTGGATTTCTTGTCAGCTTACTCGGCAGTA
AATCAAGGGCATTGCCATCCCAAGATCATTGCCGCGCTGACTGAACAAGC
CAGCAAACTAACGTTAGCATCGCGCGCGTTTTACACCGATGCCTTGGGCG
AATACCAGCAGTTCATTACTAATTATTTCGGCTACGACCGGGTACTTCCC
ATGAATACCGGTGTCGAGGGCGGCGAGACTGCGGTGAAACTCGCCCGTCG
CTGGGGCTATGACGTCAAGAAGATTCCCCGGGACCAAGCGATGGTGGTTT
TCGCCCGCGGCAATTTCTGGGGTCGGACGCTGGGGGCGATATCCTCCTCA
ACagatccttcctcccgaaaAGGCTTTGGGCCGTTCATTCCGGGGTTCGA
CCTCATCGACTACGACGATCCCGCCGCATTTGAGGCCCTttgtgaaagga
aaggaaggcggaTCGCAGCTTTTATGGTGGAGCCCATTCAGGGAGAAGCC
GGGGTTGTTGTTCCGCAAGAAAACTATTTGAAAAAGATCAAAGCTATTTG
TGAAAAACATAACATCCTCCTCATTGCCGACGAGGTTCAAACCGGCttag
gaaggacggggaagctGCTTGCCTCTGAATGGGACTCGACCAAGCCCGAT
ATATTGGTTCTAGGAAAGGCGCTGTCAGGGGGCGTCCTGCCCGTTTCTGC
CGTTCTGGCAAGTAATGAAGTAATGCTCACCATCCAGCCGGGAGAGCATG
GATCGACATTTGGTGGGAATCCACTGGCGTGTAAAGTCGCAGCGGCAGCT
CTAGCCGTCCTGCAGGATGAAAAGCTGGTCGAGAATTCTATGATCATGGG
AGAACGATTTCGATCGGGATTGAAAGCCATCCCCGCCAACGGGTTGATCG
AATCCgtgcggggaagaggactcATGAATGCAATGGTGATAGCGGATCGG
AAAGGTGATGGTGGTCCGGCTTGGGACGTGTGCTTGATGCTGAAAGAGTA
CGGCATGTTGGCGAAGCCAACACACGGGAACATAATTAGACTTGCCCCAC
CCTTGTGCATTGATGCGGATCAGGTCGACCAAGCGCTAGATATTGTGGAG
TCAGCGATAAAAAAATTCTGTTAAATGTCTTGTGCTATTTCTTGTGTGAA
GCGCGGACTTATGAACGTCTCGCGACGGCAGAGGCTGAATTACCAGGCAA
ATACTACGGAAGACATATTAAGCGGGGGGCGTCGAAGACTCTTTTCGTCg
atggcggccaaggcagTTCAAAGCAAAGCTGATAGATACATGCAACTTGA
GGACCTGCACGGAGCGCACAACTACCATCCACTGCCGGTCGTTCTCTcgc
gtggccaaggcgtgCACGTCTGGGACGTGGATAACAACAAATACCTGGAT
TTCTTGTCAGCTTACTCGGCAGTAAATCAAGGGCATTGCCATCCCAAGAT
CATTGCCGCGCTGACTGAACAAGCCAGCAAACTAACGTTAGCATCGCGCG
CGTTTTACACCGATGCCTTGGGCGAATACCAGCAGTTCATTACTAATTAT
TTCGGCTACGACCGGGTACTTCCCATGAATACCGGTGTCGAGGGCGGCGA
GACTGCGGTGAAACTCGCCCGTCGCTGGGGCTATGACGTCAAGAAGATTC
CCCGGGACCAAGCGATGGTGGTTTTCGCCCGCGGCAATTTCTGGGGTCGG
ACGCTGGGGGCGATATCCTCCTCAACagatccttcctcccgaaaAGGCTT
TGGGCCGTTCATTCCGGGGTTCGACCTCATCGACTACGACGATCCCGCCG
CATTTGAGGCCCTttgtgaaaggaaaggaaggcggaTCGCAGCTTTTATG
GTGGAGCCCATTCAGGGAGAAGCCGGGGTTGTTGTTCCGCAAGAAAACTA
TTTGAAAAAGATCAAAGCTATTTGTGAAAAACATAACATCCTCCTCATTG
CCGACGAGGTTCAAACCGGCttaggaaggacggggaagctGCTTGCCTCT
GAATGGGACTCGACCAAGCCCGATATATTGGTTCTAGGAAAGGCGCTGTC
AGGGGGCGTCCTGCCCGTTTCTGCCGTTCTGGCAAGTAATGAAGTAATGC
TCACCATCCAGCCGGGAGAGCATGGATCGACATTTGGTGGGAATCCACTG
GCGTGTAAAGTCGCAGCGGCAGCTCTAGCCGTCCTGCAGGATGAAAAGCT
GGTCGAGAATTCTATGATCATGGGAGAACGATTTCGATCGGGATTGAAAG
CCATCCCCGCCAACGGGTTGATCGAATCCgtgcggggaagaggactcATG
AATGCAATGGTGATAGCGGATCGGAAAGGTGATGGTGGTCCGGCTTGGGA
CGTGTGCTTGATGCTGAAAGAGTACGGCATGTTGGCGAAGCCAACACACG
GGAACATAATTAGACTTGCCCCACCCTTGTGCATTGATGCGGATCAGGTC
GACCAAGCGCTAGATATTGTGGAGTCAGCGATAAAAAAATTCTGTTAAAT
GTCTTGTGCTATTTCTTGTGTGAAGCGCGGACTTATGAACGTCTCGCGAC
GGCAGAGGCTGAATTACCAGGCAAATACTACGGAAGACATATTAAGCGGG
GGGCGTCGAAGACTCTTTTCGTCgatggcggccaaggcagTTCAAAGCAA
AGCTGATAGATACATGCAACTTGAGGACCTGCACGGAGCGCACAACTACC
ATCCACTGCCGGTCGTTCTCTcgcgtggccaaggcgtgCACGTCTGGGAC
GTGGATAACAACAAATACCTGGATTTCTTGTCAGCTTACTCGGCAGTAAA
TCAAGGGCATTGCCATCCCAAGATCATTGCCGCGCTGACTGAACAAGCCA
GCAAACTAACGTTAGCATCGCGCGCGTTTTACACCGATGCCTTGGGCGAA
TACCAGCAGTTCATTACTAATTATTTCGGCTACGACCGGGTACTTCCCAT
GAATACCGGTGTCGAGGGCGGCGAGACTGCGGTGAAACTCGCCCGTCGCT
GGGGCTATGACGTCAAGAAGATTCCCCGGGACCAAGCGATGGTGGTTTTC
GCCCGCGGCAATTTCTGGGGTCGGACGCTGGGGGCGATATCCTCCTCAAC
agatccttcctcccgaaaAGGCTTTGGGCCGTTCATTCCGGGGTTCGACC
TCATCGACTACGACGATCCCGCCGCATTTGAGGCCCTttgtgaaaggaaa
ggaaggcggaTCGCAGCTTTTATGGTGGAGCCCATTCAGGGAGAAGCCGG
GGTTGTTGTTCCGCAAGAAAACTATTTGAAAAAGATCAAAGCTATTTGTG
AAAAACATAACATCCTCCTCATTGCCGACGAGGTTCAAACCGGCttagga
aggacggggaagctGCTTGCCTCTGAATGGGACTCGACCAAGCCCGATAT
ATTGGTTCTAGGAAAGGCGCTGTCAGGGGGCGTCCTGCCCGTTTCTGCCG
TTCTGGCAAGTAATGAAGTAATGCTCACCATCCAGCCGGGAGAGCATGGA
TCGACATTTGGTGGGAATCCACTGGCGTGTAAAGTCGCAGCGGCAGCTCT
AGCCGTCCTGCAGGATGAAAAGCTGGTCGAGAATTCTATGATCATGGGAG
AACGATTTCGATCGGGATTGAAAGCCATCCCCGCCAACGGGTTGATCGAA
TCCgtgcggggaagaggactcATGAATGCAATGGTGATAGCGGATCGGAA
AGGTGATGGTGGTCCGGCTTGGGACGTGTGCTTGATGCTGAAAGAGTACG
GCATGTTGGCGAAGCCAACACACGGGAACATAATTAGACTTGCCCCACCC
TTGTGCATTGATGCGGATCAGGTCGACCAAGCGCTAGATATTGTGGAGTC
AGCGATAAAAAAATTCTGTTAA

Synonyms

Publications