rna355, rna355 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna355
Unique Name	rna355
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	507
Alignment location	CM002455.1:867827..869932 -

Link to JBrowse

Properties


Property Name	Value
Product	Organic solute transporter Ost-alpha
Orig transcript id	gnl\|cribi\|Naga_100003g141.1811.mrna
Orig protein id	gnl\|cribi\|Naga_100003g141.1811
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:867827..869932 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g141	gene342	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna355	rna355-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30294.1	cds355	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:867827..869932-
coding sequence from alignment at CM002455.1:867827..869932-

mRNA sequence

>rna355 ID=rna355|Name=rna355|organism=Nannochloropsis gaditana|type=mRNA|length=507bp
ATGATTAGATTCATATTGTTCGTCAACAAACAGGGCCAAACAAGGCTTTC
TAGCTACTATACATGGATGAGCATTCCCGAACGTGTCGCTCTGGAAGCAG
AGATCATCCGAAAGTGCTTGTCCCGCTCTGAGCTTCAATGTCAGTTTATA
GAATACCGGGGGCATAAAGTCATTTACCGACGGTATGCGTCACTATTTTT
CATTGTGGGTGTAGAAGGAGATGATGCCACGGGAAGTGCCCACAGCGTAA
GTACAAATGGTGGGTGCGAGAATGAGTTGGCCATCTTGGAATTTATCCAT
GCCTTGGTGGAGACTTTAGATAAGTACTTTGAAAGCGTCTGCGAGCTGGA
CATAATGTTCAACTTGGAGAAGGCACATTTCATTGTTGACGAAATGGTAA
TTAATGGACACATAGTGGACGCCAACAAGACAAATATCTTAAAACCAATA
CACCTTATGGAGAAAGCAAGCGCGAGTGAGGAGTCGATCTTTTCGAGGAG
AGGATAG

protein sequence of rna355

>rna355-protein ID=rna355-protein|Name=rna355|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MYIGTGGVSALNIVFGILAVVLVLCMQKEHAIRCYVLPLQRNAARLFNLA
PTYSFFILLTAYVTSGKPVWDVFMAIVDGYALYCFFGLVILGAGGESRVV
TRLAAALPKVEDDLTVNGAVAQVSGIRNDKLKFSACLCISLQFESAQRIY
TFLQLSVKQVMISRPILLAASSICDRLGHGVLASIGERGFRILSLLVLVY
AVMTIGRTYHLLRQQIWPAFNPVAAFMVVKGFILLITMQDFVIAMIFSAR
DPHYVERSTRAALAIYSLVVSIESILYLIVVRQFLKPRIFQSYSTQSFCS
MTISFWQFLEEVYTFSNVLGGDLPSMQDKGSSALSTAYDAAVEKLRYKYL
SIDFTCNVNHSSMLVTYTCRTSYPVAWAGNHSLPPCFYHKRRESVTTKNE
GYNCGMTYVHNFRLKTHAPLVQVSSHLGQQV

mRNA from alignment at CM002455.1:867827..869932-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna355 ID=rna355|Name=rna355|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp|location=Sequence derived from alignment at CM002455.1:867827..869932- (Nannochloropsis gaditana)
ATGTATATTGGAACTGGTGGAGTGAGCGCTCTAAACATCGTTTTTGGGAT
CCTTGCCGTGGTTTTGGTGCTTTGTATGCAGAAAGAGCACGCGATACGTT
GCTACGTTTTACCGTTACAAAGAAATGCTGCGCGGCTCTTCAACTTAGCG
CCCACGTACAGCTTTTTCATCCTCTTGACAGCGTATGTGACGTCTGGCAA
ACCTGTGTGGGACGTGTTCATGGCTATCGTGGACGGCTACGCCCTGTATT
GTTTTTTCGGCCTCGTTATCCTTGGCGCGGGGGGTGAGAGTCGTGTGGTC
ACCCGTTTGGCCGCCGCCTTGCCCAAAGTGGAAGATGATTTAACTGTCAA
TGGGGCTGTTGCTCAAGTTAGTGGAATAAGAAACGACAAACTCAAATTTT
CGGCCTGCCTTTGCATCTCGCTACAATTTGAAAGCGCGCAACGCATTTAC
ACGTTTCTACAGCTCTCTGTCAAGCAGGTTATGATTTCTCGACCGATCCT
CTTGGCTGCCAGTTCGATATGCGACCGCTTGGGCCATGGAGTGCTTGCAT
CAATTGGGGAACGCGGATTTAGAATCTTGAGTCTGCTGGTCCTGGTTTAT
GCCGTTATGACGATAGGACGTACGTATCACCTCCTCCGTCAACAGATTTG
GCCAGCTTTCAATCCCGTTGCGGCATTCATGGTCGTCAAAGGTTTTATTT
TGCTTATCACGATGCAAGATTTTGTGATTGCGATGATATTTTCGGCCCGT
GATCCACATTATGTGGAAAGAAGCACTCGCGCAGCCCTGGCAATATACTC
GCTTGTAGTATCAATCGAAAGTATTTTGTATCTGATAGTAGTGAGACAAT
TTCTTAAGCCTCGAATTTTTCAAAGTTACAGTACTCAGTCTTTTTGCTCA
ATGACTATATCCTTTTGGCAATTCCTCGAGGAAGTGTATACGTTTTCAAA
TGTACTTGGAGGCGATTTGCCTTCCATGCAGGATAAAGGCAGTTCCGCTT
TGTCAACAGCATATGATGCTGCAGTCGGTATAGAGATGTCCACATAAAGC
CCAGACGTGCTTTAAAAGAAAAGCTTCGGTACAAATACCTCAGCATCGAT
TTCACATGTAATGTCAATCACTCTTCCATGCTGGTTACATATACTTGCCG
CACTTCCTATCCTGTTGCCTGGGCGGGAAATCATTCTCTACCGCCTTGTT
TTTATCATAAACGGCGTGAAAGTGTAACGACAAAGAACGAAGGCTATAAT
GTAGACAGCGCATGATTTCATCTTTATATCTATTTTTTGTTCCATATCAT
GTGGCGTTGTTTTGATTTCGAAAGCAATGTTGCTTTTACTTTCATGTTTC
TCAAGTGAAACTCATCATAGCTTATTTTCTTCCCAATCGGATATACTTTC
ATTTTTGATTTTCTAAGTGATTTTGCACTTTTTGGATTAAAATGAGTACT
GTTAGGGTTGACAATTGTGATTCTTTTGAAAGATGTGGTTAAACCGCCTT
AATTCATTTATTTGAACCCTCAAGAAGGACTCAGTGAGGTGTTAAGTGGA
TTATTACCATCGTGCGTAACTTCACTAGGAGCTCCGTAGCCAAAAAGCCT
ACGATAAACTTCAAGGCATACCATTTGAAATACAGCAATGCTTTTTCACC
AATCATCTCGCTTTTTCACCAATCATCTCGCAAAAAGATTCCATTTCGAT
ACACGCGTTCCCCTCAACATTATCTTCAGCATATATAGTATAATTATGCC
GTTGCAGATGTGCACTTTAATCAGAATTTTAAATCATATTACCATCGTTG
AGATCCTTTATCAGCATTCTCTGTGAAGGCGCAGGTAATTTGGATGGAAA
GCGGCACTTATTTTTCTACAACCACGCTGCGCGGCAAATACTATCGCGAG
GTGGGGACATGAAGTGACATCCGTTACTACAACACGAACAACACGAACAA
TATCAAGCGAGGAGGGCTCAAATTTAAGAGCCGCAAGAAATTTCCGACCA
TTCTACTTCATACTAAAAGTGCGGAATGACATACGTACATAACTTCAGAC
TGAAAACTCATGCACCACTTGTCCAAGTCTCGTCACACCTAGGGCAACAG
GTCTAA

Coding sequence (CDS) from alignment at CM002455.1:867827..869932-

>rna355 ID=rna355|Name=rna355|organism=Nannochloropsis gaditana|type=CDS|length=3888bp|location=Sequence derived from alignment at CM002455.1:867827..869932- (Nannochloropsis gaditana)
TGCGGAATGACATACGTACATAACTTCAGACTGAAAACTCATGCACCACT
TGTCCAAGTCTCGTCACACCTAGGGCAACAGGTCTAAAAAAGCTTCGGTA
CAAATACCTCAGCATCGATTTCACATGTAATGTCAATCACTCTTCCATGC
TGGTTACATATACTTGCCGCACTTCCTATCCTGTTGCCTGGGCGGGAAAT
CATTCTCTACCGCCTTGTTTTTATCATAAACGGCGTGAAAGTGTAACGAC
AAAGAACGAAGGCTATAATATGTATATTGGAACTGGTGGAGTGAGCGCTC
TAAACATCGTTTTTGGGATCCTTGCCGTGGTTTTGGTGCTTTGTATGCAG
AAAGAGCACGCGATACGTTGCTACGTTTTACCGTTACAAAGAAATGCTGC
GCGGCTCTTCAACTTAGCGCCCACGTACAGCTTTTTCATCCTCTTGACAG
CGTATGTGACGTCTGGCAAACCTGTGTGGGACGTGTTCATGGCTATCGTG
GACGGCTACGCCCTGTATTGTTTTTTCGGCCTCGTTATCCTTGGCGCGGG
GGGTGAGAGTCGTGTGGTCACCCGTTTGGCCGCCGCCTTGCCCAAAGTGG
AAGATGATTTAACTGTCAATGGGGCTGTTGCTCAAGTTAGTGGAATAAGA
AACGACAAACTCAAATTTTCGGCCTGCCTTTGCATCTCGCTACAATTTGA
AAGCGCGCAACGCATTTACACGTTTCTACAGCTCTCTGTCAAGCAGGTTA
TGATTTCTCGACCGATCCTCTTGGCTGCCAGTTCGATATGCGACCGCTTG
GGCCATGGAGTGCTTGCATCAATTGGGGAACGCGGATTTAGAATCTTGAG
TCTGCTGGTCCTGGTTTATGCCGTTATGACGATAGGACGTACGTATCACC
TCCTCCGTCAACAGATTTGGCCAGCTTTCAATCCCGTTGCGGCATTCATG
GTCGTCAAAGGTTTTATTTTGCTTATCACGATGCAAGATTTTGTGATTGC
GATGATATTTTCGGCCCGTGATCCACATTATGTGGAAAGAAGCACTCGCG
CAGCCCTGGCAATATACTCGCTTGTAGTATCAATCGAAAGTATTTTGTAT
CTGATAGTAGTGAGACAATTTCTTAAGCCTCGAATTTTTCAAAGTTACAG
TACTCAGTCTTTTTGCTCAATGACTATATCCTTTTGGCAATTCCTCGAGG
AAGTGTATACGTTTTCAAATGTACTTGGAGGCGATTTGCCTTCCATGCAG
GATAAAGGCAGTTCCGCTTTGTCAACAGCATATGATGCTGCAGTCGTGCG
GAATGACATACGTACATAACTTCAGACTGAAAACTCATGCACCACTTGTC
CAAGTCTCGTCACACCTAGGGCAACAGGTCTAAAAAAGCTTCGGTACAAA
TACCTCAGCATCGATTTCACATGTAATGTCAATCACTCTTCCATGCTGGT
TACATATACTTGCCGCACTTCCTATCCTGTTGCCTGGGCGGGAAATCATT
CTCTACCGCCTTGTTTTTATCATAAACGGCGTGAAAGTGTAACGACAAAG
AACGAAGGCTATAATATGTATATTGGAACTGGTGGAGTGAGCGCTCTAAA
CATCGTTTTTGGGATCCTTGCCGTGGTTTTGGTGCTTTGTATGCAGAAAG
AGCACGCGATACGTTGCTACGTTTTACCGTTACAAAGAAATGCTGCGCGG
CTCTTCAACTTAGCGCCCACGTACAGCTTTTTCATCCTCTTGACAGCGTA
TGTGACGTCTGGCAAACCTGTGTGGGACGTGTTCATGGCTATCGTGGACG
GCTACGCCCTGTATTGTTTTTTCGGCCTCGTTATCCTTGGCGCGGGGGGT
GAGAGTCGTGTGGTCACCCGTTTGGCCGCCGCCTTGCCCAAAGTGGAAGA
TGATTTAACTGTCAATGGGGCTGTTGCTCAAGTTAGTGGAATAAGAAACG
ACAAACTCAAATTTTCGGCCTGCCTTTGCATCTCGCTACAATTTGAAAGC
GCGCAACGCATTTACACGTTTCTACAGCTCTCTGTCAAGCAGGTTATGAT
TTCTCGACCGATCCTCTTGGCTGCCAGTTCGATATGCGACCGCTTGGGCC
ATGGAGTGCTTGCATCAATTGGGGAACGCGGATTTAGAATCTTGAGTCTG
CTGGTCCTGGTTTATGCCGTTATGACGATAGGACGTACGTATCACCTCCT
CCGTCAACAGATTTGGCCAGCTTTCAATCCCGTTGCGGCATTCATGGTCG
TCAAAGGTTTTATTTTGCTTATCACGATGCAAGATTTTGTGATTGCGATG
ATATTTTCGGCCCGTGATCCACATTATGTGGAAAGAAGCACTCGCGCAGC
CCTGGCAATATACTCGCTTGTAGTATCAATCGAAAGTATTTTGTATCTGA
TAGTAGTGAGACAATTTCTTAAGCCTCGAATTTTTCAAAGTTACAGTACT
CAGTCTTTTTGCTCAATGACTATATCCTTTTGGCAATTCCTCGAGGAAGT
GTATACGTTTTCAAATGTACTTGGAGGCGATTTGCCTTCCATGCAGGATA
AAGGCAGTTCCGCTTTGTCAACAGCATATGATGCTGCAGTCGTGCGGAAT
GACATACGTACATAACTTCAGACTGAAAACTCATGCACCACTTGTCCAAG
TCTCGTCACACCTAGGGCAACAGGTCTAAAAAAGCTTCGGTACAAATACC
TCAGCATCGATTTCACATGTAATGTCAATCACTCTTCCATGCTGGTTACA
TATACTTGCCGCACTTCCTATCCTGTTGCCTGGGCGGGAAATCATTCTCT
ACCGCCTTGTTTTTATCATAAACGGCGTGAAAGTGTAACGACAAAGAACG
AAGGCTATAATATGTATATTGGAACTGGTGGAGTGAGCGCTCTAAACATC
GTTTTTGGGATCCTTGCCGTGGTTTTGGTGCTTTGTATGCAGAAAGAGCA
CGCGATACGTTGCTACGTTTTACCGTTACAAAGAAATGCTGCGCGGCTCT
TCAACTTAGCGCCCACGTACAGCTTTTTCATCCTCTTGACAGCGTATGTG
ACGTCTGGCAAACCTGTGTGGGACGTGTTCATGGCTATCGTGGACGGCTA
CGCCCTGTATTGTTTTTTCGGCCTCGTTATCCTTGGCGCGGGGGGTGAGA
GTCGTGTGGTCACCCGTTTGGCCGCCGCCTTGCCCAAAGTGGAAGATGAT
TTAACTGTCAATGGGGCTGTTGCTCAAGTTAGTGGAATAAGAAACGACAA
ACTCAAATTTTCGGCCTGCCTTTGCATCTCGCTACAATTTGAAAGCGCGC
AACGCATTTACACGTTTCTACAGCTCTCTGTCAAGCAGGTTATGATTTCT
CGACCGATCCTCTTGGCTGCCAGTTCGATATGCGACCGCTTGGGCCATGG
AGTGCTTGCATCAATTGGGGAACGCGGATTTAGAATCTTGAGTCTGCTGG
TCCTGGTTTATGCCGTTATGACGATAGGACGTACGTATCACCTCCTCCGT
CAACAGATTTGGCCAGCTTTCAATCCCGTTGCGGCATTCATGGTCGTCAA
AGGTTTTATTTTGCTTATCACGATGCAAGATTTTGTGATTGCGATGATAT
TTTCGGCCCGTGATCCACATTATGTGGAAAGAAGCACTCGCGCAGCCCTG
GCAATATACTCGCTTGTAGTATCAATCGAAAGTATTTTGTATCTGATAGT
AGTGAGACAATTTCTTAAGCCTCGAATTTTTCAAAGTTACAGTACTCAGT
CTTTTTGCTCAATGACTATATCCTTTTGGCAATTCCTCGAGGAAGTGTAT
ACGTTTTCAAATGTACTTGGAGGCGATTTGCCTTCCATGCAGGATAAAGG
CAGTTCCGCTTTGTCAACAGCATATGATGCTGCAGTCG

Synonyms

Publications