rna3543, rna3543 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3543
Unique Name	rna3543
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2694
Alignment location	CM002461.1:652046..654800 +

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100010g104.6124.mrna
Orig protein id	gnl\|cribi\|Naga_100010g104.6124
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:652046..654800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g104	gene3413	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3543	rna3543-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27154.1	cds3534	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:652046..654800+
coding sequence from alignment at CM002461.1:652046..654800+

mRNA sequence

>rna3543 ID=rna3543|Name=rna3543|organism=Nannochloropsis gaditana|type=mRNA|length=2694bp
ATGCCCTCTCCCTCCCGGTCAAGCTATCATCCTCCACTAGCGGCTAGCCA
TCTCTTGCCTACACATGCGACGGTATTAGCGCAGGTACAGAAAGCCCGAG
AAGCCTGGAAAACTCGACGAGACTCAGTAACTGCCGCACCATTGTACTTA
CGCATCTTGCAGCGTGTACCAGAGCTACTGGCCGAGCTTGAAGTTGAATT
GGTTGAGTCGATGAGCGCATATGCGGATGCCTTGTTGAAGCAAAACAAAG
CGACCTCGAGAGCGAGTGCACTGTGGTTGATGGATAATGCCTGTCGGAGT
TTGCCAACATCTGGCCTATTGGCGTTCGAATATGGAAGAATATGTTTCCA
GGCTCAGGAATATGTGTCCGCCCTCGAAGCCTTCCGACGAGCTCTACACA
TTCGTCCCAGGCACCTAGCCGCTCTTGATGCATTGGAGAATCTCAAGAAC
TTGGCGCTTGATCGTTGGCATTTCCGCATGCTGAATGACAGAAGTCGGAA
TGCAAATTACCAGCGAGCCATCTTTTCGTGCATTAGGGAGCAAGCCAGAC
GGCTCGGGCGCGCTCCCCGCGTGCTGGACGTCGGCACTGGTACTGGCCTC
CTGGCATGGATGGCTCTGAAGGGAGGCGCGGGTGACGTGGTGGCTTGTGA
AGTCAATTCTGTCCTTTCTTCGATTGCCTCACGGCTTCTAGACAGAGAAA
AGGGACGCGTGCAGGTGCTGAATCTATCCTCCTACGACTTGCATCTGGAC
CCGCCCGCAGACGTGATTGTGACAGAGCTCGTGGACTCAGGCTTGCTCGG
CGAGCACATTCTACCCGTATTGAGGCATGCACGTCAACACTTGCTTCGCC
AGGGAGGGTGTATAATTCCGCATGCTGCAAGGGTGCACGTGACTGTGGTT
GAGTCTGTGGACATACGGCACCGCGCATCCTTGGACGAACAGGTGCGTCT
CGCTCTGGGAGGGAATGCAAATGACGGCGACGACGATTTGGAACATCGTA
GTACAGGCATCCACAGCAAAGGTTCAAGCGATAGCGATGAGGACAGTACG
GTTCCCGACGTTCGGGCAGAAGAGGGCTACACTTGTGAGTCGATCGCCCG
TCTGCCCTGCCTGCGGTTGACGCGGCCGGTGACTATGCCGGAAATTGCGC
TCTCAGATCCGCCCCCTCGAATGGAGACTTTCTCAGAAGCGTCGGTAATT
GCTGACATAGATTTGGAGGTGATTGAGGACGGCGTGGCAGATGCTGTGGC
CGTCTGGTTTGACCTGGACTTGCTTCCAAGCAACAGTGAGAGCGACAGGT
GCGCTATTTCAACAGCACCGGGGCGTGATGGAAACGGATGGGACCAAGGA
TTGTACTTCCTCCCCAAGCACCTGGCGCTCCGTCGCGGGCATGTCTCTCG
CTTGCAAATCGCCCTTGTAAAAGATCAGTTGTCGTTCAGATTGGATCCGA
CTTTCACCAAGCCGACGAAGGCGGAAAACGCGAAGGATGCGTCTGTGGTT
ACCTCGCTTTGCTCATCGCCTTCCAGCGAAAGAGCTGCGACCGAGCCGTC
TGTTTGCCTCCATTCCCCTCCCACTGTGGACATGGCGGAGATGGACATAG
CTCACATGAATGACGTGCAACATCACAAGGTTTACCAGCTGGCTATCGCG
GAAAGAGCGGCTGCTGCTCTACGAGACAACAATCCTCTCACGACTATGAT
AGATTGGAGCGGAAACCTCTCAGTTCTAGGCCTCTTGGCAGCCCGGTTGC
GCACCTTGGAGGCAGTCCCTGTGACGATATTGACTGGAAGCAAGGAGTCC
GCGGCGGCTTTACGCGCACTGGGACGAAGATCGATTTATAGACACAGGCA
CTCAGGCATTTACGTCATATCACGTTCTGATGAGAATGCGGGCTCGACTC
TCTCCAGTCTGATTTCAGAGATGATATTTCGTTGCTCAAAGAAAGACAGG
AGCATAATCGAAAATGGGAGGCCTGACTCTCCTCATTTTCACGTCTTGGT
GATACATGACTTTGTTGAGAATACAGGCTGGCTCCGCCAAGGTGCTGTAG
AGGAACTGCGGTTGCTGCACAATCTGTTGCGGTCGCGGTCAGGAAAAATG
GCGGACCCAAGCGGCCTGTCGGTGACACTTATGCCCGCAGCCATATCCGT
CTTTGTGCAGGGAATAGAAGCTCCGGTGCTACTATGCCAAAACCGTTTAG
TGCCAGAAAACTTGTTGGGGTTCCCAGCAGAAGAGTTCTTGGATGGCTTG
GGCGTGCGCAAGTTCCGGGAGCTTGATTTGAGCTGCAGTGAGGACTACCG
GCCTGTCACCGGCATAACAATGGCATTTCGAGTAGACCTGGAGCATGTGG
CTTCGGCAAAGGACATGGATAACACGGCACCAGACACTGTTTCCAGGGCG
CAGATAGAGCTGCCCGTGCTCGGAGGACAAGAGGGTGCTACGCTTCATGC
GATTGGCTTCTGGTTTCGCCTGCATCTCGGTCCTCAGAATGAAAAGACGG
ACAAAAATGGAATATGTGATGCCGGCATATGTTTTGACACTGGTCCATCC
GGATTCAATCAGGAGAAGACATCTTACCGACAAGGGGCAATACTCGTTGG
TGCAACACCATTGGTGACTAGTGAGCGAGTACACCTAGAAGTTATGTGGA
GCATTGTTCGCGGGATAGAGATCGTCCTTTTGGGTATTGATTAG

protein sequence of rna3543

>rna3543-protein ID=rna3543-protein|Name=rna3543|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MNDEQRIRGTKRGDLQPPDVDLGAGSRLRAGTRVTMRRHLAALALCCSAC
AVQGFAVLPGSSASRHHRSSHPATPCPGPMSTPCFVFSPACPPLELRPRG
SLTGGSELFMLAGGLGTQVGGKSVRTDTASLFQTLRTTRLEEEVLAVIAQ
LVDGERSLNVKDYTSILAALKRFKNWKEALEVFGRMQERGVEPNAITYNA
VMGACGAAGRWKETQELFQTMIRRGLRPDAVSYGSLMIGFVRGGQWEQAL
DVLGQMKAQRMDITEGVYTTGITACEKGGQWVLALELLREMHLKGISPSL
FAYNAAIFACRRDKQWVQATALLGEMRQDGLIPDRNSYHGAMATCEEAEM
WEGVMDLYEELRAMGLEPSRQSYEYVTRACREYLTSHGEDERLKNYLRVN
KISPNVLTDESDVIFLAGAKILEYEGGQESSESDLEEQPTWMSFADDE

mRNA from alignment at CM002461.1:652046..654800+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3543 ID=rna3543|Name=rna3543|organism=Nannochloropsis gaditana|type=mRNA|length=2755bp|location=Sequence derived from alignment at CM002461.1:652046..654800+ (Nannochloropsis gaditana)
ACAGAAGGTGACATCGCCCCCCGGCTCAAGTATCTTCTGCGTCATGGACC
ACCATGCGTCATAGTTACGGGAAAGAATTGTCGTCGTCAATCAAGTCTTG
GTCTCGAACCTGTCGCGACGGAAGGCATATCAAAGTTTTTGTCTTGTGGG
TGCAGAGGCGTTGTTTTTCCTCGAGATCGAGACATTGATACACCGTTGGA
GGcatggaagggcgggagatGACGGAGCGGCTGCTTGCTTGGATCGAGCA
GTGCTGGCTCATTACGAAGTCGACCAGCGCAAATGGTGCACAAGTCCCGA
GTGTTGGAATGAAAACTGTAGCCAACTCACCCGATAACTTGTATTCACCT
GGGGGAGAGTTCGGACGGAACTGGCCCCATTTGTCGAATCCGGTGACCTC
ACTAGTAGCTGGCGCTTCTCCGGCTGGAGTCACCTACTTTCATACTCATG
CAAAGGCACTGGGTCACCACACCTTCGAATTATATCAAGAGCAATCGCAA
GCGCGGTTCTTGTAAGGACGTTTGGATCAAACAATTCATTATTACAGACT
TTCAGACGAGAGAGAAGTTGGCTTCCCTCGAATTGTCTTTCGCCTCGAAG
TTTAGTGCGAGCTATTTTATGGTAAACGTTCATATCCCAGACCATGAAGC
GTGAAATTGTGATAATTTCGTAGGATTACGCTTTTGTTGGTATGTAGGAA
TGGTCCATGAAAGCACTACACTTGGTGTCTTAACCGGCTGCATTGTAATT
TCACGTTGAGTATATAACCTTCCCGTCCTGTTTTGGGCCTCACCGCAGGG
AGCATGAACGACGAGCAGAGGATAAGAGGGACGAAAAGGGGAGATCTACA
GCCACCAGACGTGGACCTAGGGGCAGGAAGTCGTTTGCGGGCCGGAACGA
GGGTTACCATGCGGCGGCACCTTGCCGCGCTGGCCCTCTGCTGCTCGGCC
TGCGCAGTGCAGGGATTCGCGGTCCTGCCCGGCAGCAGCGCTTCTCGACA
CCATCGTTCAAGCCACCCGGCGACTCCTTGTCCGGGCCCAATGTCAACTC
CGTGTTTCGTATTCTCTCCTGCTTGCCCCCCCCTGGAGTTGAGACCACGT
GGTTCGTTGACTGGCGGCAGCGAGCTCTTCATGCTAGCCGGCGGGTTAGG
CACTCAGGTCGGAGGTAAGAGCGTTCGGACGGACACCGCGAGTCTCTTCC
AGACACTGCGGACAACACggttggaagaagaagttcTGGCTGTCATCGCG
CAGCTTGTAGATGGAGAAAGGAGCTTGAACGTTAAGGATTATACGAGCAT
TTTGGCGGCGCTTAAGCGTTTCAAGAATtggaaggaggctttggaggTAT
TTGGACGTATGCAAGAAAGGGGGGTGGAACCCAACGCAATCACCTATAAT
GCGGTGATGGGCGCTTGTGGGGCTGCCGGCCGATGGAAGGAGACGCAAGA
GCTGTTTCAGACTATGATTCGCCGAGGCCTGCGCCCCGACGCTGTGAGCT
ATGGCTCGCTGATGATCGGCTTCGTGCGGGGGGGTCAGTGGGAACAGGCG
CTTGACGTGTTGGGACAGATGAAAGCGCAGCGGATGGATATTACGGAGGG
CGTGTACACAACAGGCATCACGGCCtgcgagaagggagggcagtgggTCC
TGGCGCTGGAGTTACTGCGGGAGATGCATTTGAAAGGAATCTCACCGTCT
CTCTTCGCGTACAACGCGGCCATCTTTGCCTGCCGGCGAGACAAACAATG
GGTGCAGGCCACCGCACTGCTGGGGGAAATGAGGCAGGACGGCCTGATCC
CGGACCGCAACAGTTACCACGGGGCGATGGCCACgtgcgaggaggcggaa
atgTGGGAGGGGGTCATGGATCTATACGAGGAACTGAGAGCAATGGGACT
TGAGCCATCGCGGCAGAGCTATGAGTACGTTACACGTGCGTGCAGGGAGT
ACTTGACCTCGCACGGTGAGGATGAGCGCCTGAAAAACTATCTGCGCGTC
AACAAAATTTCTCCGAACGTGCTGACGGACGAGAGTGATGTCATCTTTTT
GGCCGGAGCCAAGATCTTAGAATATGAGGGGGGCCAAGAGAGTTCAGAAA
GCGACTTGGAGGAGCAACCCACTTGGATGAGTTTCGCAGACGACGAGTAA
GTGCCAGACGACCATGGTCCCTTGCCTCGCTGGTGAGAGCGACCCTGGGT
GTTGGGAAGGTCCTAGTCTCGATATCTCTCTGTATCCCCTAGCAATGGGG
CATGGCACGTCGGAAACGGTGGACTCGCACTTGTACGGTGTACGGCGTTG
ACGGAATGGGGAACGTTTGTCTGTGTGGCCCGCAGCAATCTGTGCAGGAT
GCAAGGCAAGGCTATCGATCCGCCCACGATAATCGAAGTAGGCACTTAAA
TTACTTGCGCTTTATGGCAAAAACTTGGATAGGGACGGCTCATGGGCAGC
TCGACTGAGCTATTGACCTCAAACGAACCGCTTGCCCGGCCGTTTTGCCG
TTATAGGATAAGATGGCGACTTCGAAtaattttaaaaaaagaaaagaact
ATCAGGTTTAGACTTTGTTGACAACAGGTGAATGTCTGCCTGGCATAGAC
GCAACCTTGAGCTCATGCGAAATAGAAAACGACTCAGAAAATCCTTTCAT
GCTTGAGCACGATGGTCGGCAGACATGTGATGCCACGTTTATGAGGAGGG
GCACTGAGCTCCTTCCAGAATCTTTCAGCCTGTGGAAAAACTGAGCAATT
TGTTG

Coding sequence (CDS) from alignment at CM002461.1:652046..654800+

>rna3543 ID=rna3543|Name=rna3543|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at CM002461.1:652046..654800+ (Nannochloropsis gaditana)
ATGAACGACGAGCAGAGGATAAGAGGGACGAAAAGGGGAGATCTACAGCC
ACCAGACGTGGACCTAGGGGCAGGAAGTCGTTTGCGGGCCGGAACGAGGG
TTACCATGCGGCGGCACCTTGCCGCGCTGGCCCTCTGCTGCTCGGCCTGC
GCAGTGCAGGGATTCGCGGTCCTGCCCGGCAGCAGCGCTTCTCGACACCA
TCGTTCAAGCCACCCGGCGACTCCTTGTCCGGGCCCAATGTCAACTCCGT
GTTTCGTATTCTCTCCTGCTTGCCCCCCCCTGGAGTTGAGACCACGTGGT
TCGTTGACTGGCGGCAGCGAGCTCTTCATGCTAGCCGGCGGGTTAGGCAC
TCAGGTCGGAGGTAAGAGCGTTCGGACGGACACCGCGAGTCTCTTCCAGA
CACTGCGGACAACACggttggaagaagaagttcTGGCTGTCATCGCGCAG
CTTGTAGATGGAGAAAGGAGCTTGAACGTTAAGGATTATACGAGCATTTT
GGCGGCGCTTAAGCGTTTCAAGAATtggaaggaggctttggaggTATTTG
GACGTATGCAAGAAAGGGGGGTGGAACCCAACGCAATCACCTATAATGCG
GTGATGGGCGCTTGTGGGGCTGCCGGCCGATGGAAGGAGACGCAAGAGCT
GTTTCAGACTATGATTCGCCGAGGCCTGCGCCCCGACGCTGTGAGCTATG
GCTCGCTGATGATCGGCTTCGTGCGGGGGGGTCAGTGGGAACAGGCGCTT
GACGTGTTGGGACAGATGAAAGCGCAGCGGATGGATATTACGGAGGGCGT
GTACACAACAGGCATCACGGCCtgcgagaagggagggcagtgggTCCTGG
CGCTGGAGTTACTGCGGGAGATGCATTTGAAAGGAATCTCACCGTCTCTC
TTCGCGTACAACGCGGCCATCTTTGCCTGCCGGCGAGACAAACAATGGGT
GCAGGCCACCGCACTGCTGGGGGAAATGAGGCAGGACGGCCTGATCCCGG
ACCGCAACAGTTACCACGGGGCGATGGCCACgtgcgaggaggcggaaatg
TGGGAGGGGGTCATGGATCTATACGAGGAACTGAGAGCAATGGGACTTGA
GCCATCGCGGCAGAGCTATGAGTACGTTACACGTGCGTGCAGGGAGTACT
TGACCTCGCACGGTGAGGATGAGCGCCTGAAAAACTATCTGCGCGTCAAC
AAAATTTCTCCGAACGTGCTGACGGACGAGAGTGATGTCATCTTTTTGGC
CGGAGCCAAGATCTTAGAATATGAGGGGGGCCAAGAGAGTTCAGAAAGCG
ACTTGGAGGAGCAACCCACTTGGATGAGTTTCGCAGACGACGAGTAA

Synonyms

Publications