rna3540, rna3540 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3540
Unique Name	rna3540
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2780
Alignment location	CM002461.1:638304..639646 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100010g100.6195.mrna
Orig protein id	gnl\|cribi\|Naga_100010g100.6195
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:638304..639646 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g100	gene3410	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27225.1	cds3531	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3540	rna3540-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:638304..639646-
coding sequence from alignment at CM002461.1:638304..639646-

mRNA sequence

>rna3540 ID=rna3540|Name=rna3540|organism=Nannochloropsis gaditana|type=mRNA|length=2780bp
CAATAGCGATAAATTCCAAACGATGCCTTGAAGCTGCAGTATTTGTGCCT
CGGTTTAGCTCATGTTCGAACCTTGCCTGTTTTGGCCGGGGTATCAGTGG
GAGGAAAAGGGGCCAAGTGCCGGGTGACTTTTCCCAGCCCCTGAGGCTTC
GTCCTCTTTTTTCTTAACATTATTGACACCCTTGACAGGGAGATCTATGA
ACCAAGAGAATGACGATGGAGAGGCTGAGGAGGAACATGACGACATCCGG
GATGAAGCAGACCGCAGTTTCTTGACACATGTCCATGGCACATTGCTGTC
ATCCTCACTAGCGGGCGGTGCTGACTGTACAAGTACCTCCCCGGCCTCCA
AAGTCATCGTACATATAGATATGGACGCTTTTTATTGCCAGGTTGAAGCA
GGATTAGATCCTTCCCTGAAGGGAAAGCCAATAGCCGTCGTACAGTACGC
ACCATCGGGAGACCTCTCCACCCAGACCATCCATCATGACCGACGAGTGA
GCCAAAGCAATCAATCGCTTATTGCCGTGTCGTACGAGGCGCGTGCCCGC
GGCGTCAAAAGGATCATGCTGGGGGACCAAGCGCGGGCCGTCTGCCCCGA
TATCACTCTGGTCCAAGTGTGCGTGGCCCATAAAAAGGCGGACCTGACAA
TTTATCGCGAAGCGGGCGCCAAGGTGATCAAGATTCTTGCCCGGTACGGC
CCCACGGAGCGGGCGTCCATTGACGAGGCCTACGTGGACTTGACGGCCAT
GGCCCAGTCCCGCCTGAGGGACTTTGGCCCCGACATGATCGTCAGGGCCC
GCCGCGAGAGCAAAGTAGCGGGCCTGGAGGGGCAGAAGGAACAGGCGACT
TTAACACGGGAGGATGTACGAAACGGGGTTCTAATAGGAGGGCAGGTGAG
GCAAGACGGCTCTACCAAGGAGGAAAGGAGAGGGTCTAGCCCTTCGGTGT
CCAGGACTGGTGACGAGGGCGGGAGGGTGGAGAACGCAGCATTGACCATC
CCGCGCGCAGGGACCGCCTGGATTGGGAGGGATGCATGCATGGCCCAGCC
GAGCGCTTTGGACGACCTTATCCAATACTCTGTTGCCCTCTCGTGTGCCG
ACGAGCCAGGGCAGGCAAGGGCCTCGACCTCAGCATCGACGACGCGAGCG
GCCGCTGCTTGGTGGGAGCGACCGCTGCAAGCATGGACCAGAAGCGAAAA
GGAGATGGTTTGCGGAGCCGCTATCTTATCCGAAATGCGCGCCGCAGTGA
CAGCCGAGCTCGGATACACTTGCTCTGGAGGCCTTGCCCCATCCAAACTG
CTTGCGAAGCTGGGCTCAGCCATGCATAAACCAAACCAACAGACGTTAAT
TGTTCAAGAAATGATTCCTATTTTGTTGGCCCCGCTACCAGTGGCTAGAT
TAAAGGGCTTAGGTGGCGATTTCGGGAAAAAGGTGATGGAAGATCTTGGC
TGCAGCACCATCGGCGAAGTGGTGGAAAGGCCGTTGAGCCGTCTGGAGGC
CCTGTACGGGGAATCGGATGCAGCTTGGCTTTTCAAACTTGTGCGGGGCG
TGGACGACGACAGCGTTGAAGACCGGCGCCTGGCTAAGTCCGTGTCGTGC
GGTAAGACGTTCTTCGGGAATAACAATCTGAGAGAGATGGAGCAAATACA
CCGATGGCTCCGGCAACTCGCCGGTGAGCTCACGCAGCGACTGCGAAGGG
ATGCAGAGCTCCACGCTCGCATTCCCCAACTCTTGACGGTGTCCTTCCAG
TCGATGGGCGTGGGAGGCCACCACCAGAATGCCTCACGGTCGGCGCCGTT
GCGGCTCTCTATCGAACAACTTCTGTCGGTGGACGCCGAAGAGACAGTAG
AGAAGGGCACTCCTTCAGCACAGATGGGTGGGAGGAACGACGTACAGGAG
AGCTTGGCCGACCAAGGCCTGAGTTTGGTCCGTCGATGGCACAAGGAGAC
GGCTCACCTGTCCAAAAGCCAGCACACCTTGTGTCTCAGTACGCTATATT
TAACCGCGAGCAATTTCCTGGAGATCAAGCAAAAAAGTCGCATGACCTCA
TTTTTCCCTAAATTTGGTGCAAATTCCACACATTCTGCAGTCGACTCAGG
GTCGAACTCTAAGGCCACCGCACCTCCAGAGTACTCCTTTTCCGATTCAA
AGTCATCCTCGCCTTGTGCAGGTGCAGGTGACCTGTCCACTGACCCACCC
CCAGCTCCCTGCGAGTCCTTTTTCAAAGCAAGTCGAAGCACGCCCATCGC
AAAGCAGGGGTCTCCGGTGGAGGAGATTGCCGAGACGCGAAAACGCCAGC
TTGATGGAGAAACTGCAGCGAAGCGAGAAAGTACGAACATGGGCGGACTG
GATCCCACCGTGATCGACCCTGCAGTCCTTGAGGAGCTCCCGCCCCACAT
CCGGCGTGAAATAACGGATGGCATCGCCGCGGCCACTGCTTCTGGAAAGA
GGAACAAATTTAGCTCACGATCTGCGCCCAATGAAAAGAAGATAGACACG
TACTTCCCCAAGGGCGGACCGCATACCGGATGGCCTACACCTGCGAGGCC
ACCACCCTCCTCTTTGTCCGTAAAACGAGGGACCTTGGACAGGTTTTTGA
AGACGACCAAGTAGATAAAAAAGAAAATACATTCACAGACAATACATCAA
ACAGCCATATTGCCACTTTCGTAAGATCCATGCAATGCCAGATATTTATA
CTTTCGACTCTCCATTGGACAGCGTACTGCTACAGTTATTCTTGTATGCA
TGCCTCACTTGGGGGGCGTCGCGGGGGAAG

protein sequence of rna3540

>rna3540-protein ID=rna3540-protein|Name=rna3540|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MANQGVKTIMRLHYVTASDSHARAIVSVLASVLQLPSSSSSASLHLGNAV
LEFSALPAWVNYARQSRVLKRPQVSRLRAIEVFTGTSCGEGSKGSTAAQS
SFPHQNARAWLTEDRPLITPTFQKSSFCSAPTNAVATPFVREVVLGAGLR
WVEMTRLVTDELDAIPCPGFPHLYVLHAELSDSKAPPSSGIFVRLLHSPM
SAVVLQVRAGGLNKLKEDLRRRGVTFEEIGSTGATEGQLLLSSHLLRGLD
VRLCDADAVLSPYFNEGDEVLREHVIEELNPGLSLPLASVEAGQQANSPA
EEYRRMGARTGDCWSEFRSQIKRPGGFFTASSPATPPK

mRNA from alignment at CM002461.1:638304..639646-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3540 ID=rna3540|Name=rna3540|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp|location=Sequence derived from alignment at CM002461.1:638304..639646- (Nannochloropsis gaditana)
ATCTCCTCTAGCAGGGGGAGAATGGAAAGCGGAAGAAGGGGAGCAATAGG
CAGACTTTTCATCCAAACGTAAAAATTCATTTTTTGGGAAGAGCAGAGTT
TTCCAGACTCACGTGCGCGGAGGCATCAGGAGGTTGTTGTTAATGCGTCG
CCATCCCTTCCTTGGAGAACTTCAATCTATGACTCACTCGCCCTCGTCAC
AACACCCCTACCATACATGCTAAGCAGCTGTCAATGGCGAACCAAGGAGT
CAAGACAATAATGCGTTTGCACTACGTTACTGCGAGTGATTCCCACGCCA
GGGCTATCGTGAGCGTCCTCGCCTCTGTCCTGCAACTTCCCTCGTCCTCC
TCCTCCGCCTCCCTTCATTTGGGGAATGCAGTTCTTGAATTTTCGGCCTT
GCCTGCATGGGTGAATTATGCACGGCAATCAAGGGTACTCAAACGCCCAC
AGGTGTCTCGATTGCGGGCCATTGAAGTCTTCACGGGAACCTCCTGCGGA
GAGGGTAGCAAGGGCTCGACAGCTGCACAGAGTTCCTTTCCGCATCAGAA
TGCACGAGCCTGGTTAACGGAAGACCGGCCTCTCATAACACCGACCTTCC
AAAAATCTTCCTTTTGCAGTGCTCCGACCAACGCCGTGGCTACCCCTTTT
GTTCGGGAGGTCGTCTTAGGAGCAGGTCTCCGTTGGGTGGAGATGACAAG
ACTTGTAACAGACGAGCTCGACGCCATCCCTTGCCCAGGATTCCCGCATT
TGTACGTTTTACATGCAGAACTTTCCGACTCAAAGGCGCCTCCATCATCA
GGAATCTTCGTGCGCCTGTTGCACTCCCCGATGTCTGCAGTGGTCCTGCA
AGTCAGGGCAGGCGGGCTAAATAAATTGAAGGAGGATTTGCGGCGCAGAG
GTGTCACGTTCGAAGAAATTGGGAGCACCGGGGCAACAGAAGGGCAGCTT
CTTTTATCATCGCACCTCCTGCGCGGGCTCGATGTACGGCTGTGTGACGC
CGATGCCGTCCTTAGCCCTTACTTTAACGAAGGGGACGAGGTGCTTCGCG
AGCATGTCATCGAAGAGCTAAATCCTGGTCTTTCCCTGCCTCTGGCATCT
GTGGAGGCAGGTCAGCAAGCCAATTCGCCCGCCGAAGAGTATCGCCGCAT
GGGTGCGAGAACAGGGGACTGCTGGTCCGAGTTTCGCTCCCAGATAAAGC
GCCCAGGAGGATTTTTCACTGCCTCTTCCCCCGCGACGCCCCCCAAGTGA
GGCATGCATACAAGAATAACTGTAGCAGTACGCTGTCCAATGGAGAGTCG
AAAGTATAAATATCTGGCATTGCATGGATCTTACGAAAGTGGC

Coding sequence (CDS) from alignment at CM002461.1:638304..639646-

>rna3540 ID=rna3540|Name=rna3540|organism=Nannochloropsis gaditana|type=CDS|length=1017bp|location=Sequence derived from alignment at CM002461.1:638304..639646- (Nannochloropsis gaditana)
ATGGCGAACCAAGGAGTCAAGACAATAATGCGTTTGCACTACGTTACTGC
GAGTGATTCCCACGCCAGGGCTATCGTGAGCGTCCTCGCCTCTGTCCTGC
AACTTCCCTCGTCCTCCTCCTCCGCCTCCCTTCATTTGGGGAATGCAGTT
CTTGAATTTTCGGCCTTGCCTGCATGGGTGAATTATGCACGGCAATCAAG
GGTACTCAAACGCCCACAGGTGTCTCGATTGCGGGCCATTGAAGTCTTCA
CGGGAACCTCCTGCGGAGAGGGTAGCAAGGGCTCGACAGCTGCACAGAGT
TCCTTTCCGCATCAGAATGCACGAGCCTGGTTAACGGAAGACCGGCCTCT
CATAACACCGACCTTCCAAAAATCTTCCTTTTGCAGTGCTCCGACCAACG
CCGTGGCTACCCCTTTTGTTCGGGAGGTCGTCTTAGGAGCAGGTCTCCGT
TGGGTGGAGATGACAAGACTTGTAACAGACGAGCTCGACGCCATCCCTTG
CCCAGGATTCCCGCATTTGTACGTTTTACATGCAGAACTTTCCGACTCAA
AGGCGCCTCCATCATCAGGAATCTTCGTGCGCCTGTTGCACTCCCCGATG
TCTGCAGTGGTCCTGCAAGTCAGGGCAGGCGGGCTAAATAAATTGAAGGA
GGATTTGCGGCGCAGAGGTGTCACGTTCGAAGAAATTGGGAGCACCGGGG
CAACAGAAGGGCAGCTTCTTTTATCATCGCACCTCCTGCGCGGGCTCGAT
GTACGGCTGTGTGACGCCGATGCCGTCCTTAGCCCTTACTTTAACGAAGG
GGACGAGGTGCTTCGCGAGCATGTCATCGAAGAGCTAAATCCTGGTCTTT
CCCTGCCTCTGGCATCTGTGGAGGCAGGTCAGCAAGCCAATTCGCCCGCC
GAAGAGTATCGCCGCATGGGTGCGAGAACAGGGGACTGCTGGTCCGAGTT
TCGCTCCCAGATAAAGCGCCCAGGAGGATTTTTCACTGCCTCTTCCCCCG
CGACGCCCCCCAAGTGA

Synonyms

Publications