rna3534, rna3534 (mRNA) Nannochloropsis gaditana

Overview
Namerna3534
Unique Namerna3534
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length793
Alignment locationCM002461.1:619109..620994 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g93.6111.mrna
Orig protein idgnl|cribi|Naga_100010g93.6111
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:619109..620994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g93gene3404Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27141.1cds3525Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3534rna3534-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3534 ID=rna3534|Name=rna3534|organism=Nannochloropsis gaditana|type=mRNA|length=793bp
GCCATGTCAATTTCGCCATAAAGGATGGTCATTGAATCGCCTTTCGAATA
ATTTCCTACAGGAAGATGTCCAGTGTCGTTGTGAGCGGAGAACAGCAACA
AACTCAATCAACAGCGACAGGAGATGGGAACAATTTTCTTGGAGAATCCA
CAGCATCGCAAATAATAGCATCAGATACGCCAGGAACTCCTACAGGGCAA
TCTCTAGCACGCGGAAGTGCGATAGATTCAAGGATATTCTCGACCGCCAC
CATTTCAAATGAAGAAGAGCTTCAAGCCCGTGCCGACATTTATCAAATAT
CACATCGCCTGCAAAACACTGGAGACATTTTGATACTGGTCTATATCACG
CTGAAATGCTTGGTGCTTTTGCGCCATGCCCGTGGTTGCGGTCACATTTT
GGCCTGCATGTATCGTCCTGATTACTTAGAATACGGTAGGCCTGCAACGA
GCGAAGAGCTTCAGGAAGCAGAAACATTTGAATGCATTGTGGGCTATGAA
AATCTGAACAACAACTCCGTTGCTCTCCCTGGTGCGCATTATTTTTGCGA
GCCATGCTTGTCTGAGTGGTGCGAACGGGAGCGTACATGCCCGCTTTGTC
GAAGCGCTATAGGGCCGAATTTCCACTTAAACGCACCATATTGCAACATC
ACTACCCCGATCTGGCCATGCTTTCTTTGAAAGGAAGTGGTCTGTTATCA
ACGGGCATGCCTTGAGACAACTAGAAATTGGATTTTAAGGGTATTTTCAA
CGCTGTGCGAAAAGGGCCAGAAGAATATTTCAATTTTCCATTT
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protein sequence of rna3534

>rna3534-protein ID=rna3534-protein|Name=rna3534|organism=Nannochloropsis gaditana|type=polypeptide|length=555bp
MPAHFNSDQVKDMFVSDASSPETEENDSSPLPIGADEDEEKERISSDKLN
DIMTAHFSDDEEGEEEETDSQNGLGKTHRNSIMSKRTSLSKTAEYATHFH
NEKTMPEMGASPQGRYDESTYLDAVHRQQISVLGGDTSTYQVVSRTPAET
LPLQFAPPAAKEDNYYNDLHHIIVHLMALKQNLQASPSEQCGIRAAPSNT
KEEEEGKSSARKNRLCAEHFQIGIKLAGKCALHNENLRLQQQLRIMTSRV
SQHEKYLSDKVKALEEECRSLRIENSELRDQQARKRSLRSTLATNCSMKK
SCSCAEKPVNMLKTIPSTSGGTDSNSHTCRDSSQHQTQAGPMDKKAGYSK
VKDLESMLNLQAQIKSKVVLELNAKRQEVNELRDFMSLPLTTHARKLGIV
NQIASLRLRLQGTTRRFERLHLEKKVAYKASTMQRRVQLERYRHQQKMRA
LQSQQLHMLYQQAFERFLKKKDRDPRKKCQQGPYQHVKENTRHINHSSPG
TNNLPEESSIGAVAKEDGGCSYPVTFSKTISSSDNISFESLRKVLLPQTS
PKSQV
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mRNA from alignment at CM002461.1:619109..620994-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3534 ID=rna3534|Name=rna3534|organism=Nannochloropsis gaditana|type=mRNA|length=1886bp|location=Sequence derived from alignment at CM002461.1:619109..620994- (Nannochloropsis gaditana)
CGCTCCGGTCCAGTCCCACCTCAGGCTACACGTCGCATTTATTGGGCTCT
CTTACATCTTATTTTGTATGCCTGCCCATTTTAATTCAGATCAGGTGAAA
GACATGTTTGTTTCGGACGCCTCCTCGCCAGAAACAGAGGAAAACGACTC
GTCGCCGCTTCCGATTGGAGCCGATGAGGACGAAGAGAAAGAGCGTATAT
CTAGCGACAAACTGAACGACATAATGACTGCACATTTTTCTGATGATGAG
GAGGGAGAGGAGGAAGAAACAGACAGTCAGAATGGGTTAGGAAAAACCCA
CAGGAACTCCATCATGTCAAAAAGAACTTCCCTCTCCAAGACTGCTGAAT
ACGCTACTCATTTCCACAATGAGAAAACAATGCCTGAAATGGGAGCATCT
CCTCAAGGTAGGTACGATGAATCAACATATTTAGATGCTGTACACCGGCA
GCAAATTAGCGTGCTGGGCGGTGACACTAGCACGTACCAAGTTGTCTCCC
GTACGCCAGCAGAAACGCTTCCACTTCAATTTGCGCCACCAGCAGCCAAA
GAGGACAATTACTATAATGATTTGCATCATATTATCGTGCACTTGATGGC
CTTAAAGCAAAATCTGCAGGCTTCACCGAGTGAACAGTGTGGTATTCGAG
CAGCCCCCAGCAACACCAAGGAAGAAGAAGAGGGGAAGTCATCGGCTAGA
AAAAATCGGCTTTGCGCTGAGCACTTCCAAATTGGAATTAAATTAGCTGG
CAAATGTGCTTTACACAACGAGAACCTTCGACTTCAACAGCAACTTCGAA
TAATGACCTCACGAGTTTCTCAGCATGAGAAATACCTTTCGGATAAAGTC
AAGGCTTTGGAAGAAGAATGTAGATCGCTTCGCATCGAGAATTCGGAATT
GCGTGACCAACAAGCGCGAAAGAGATCCTTGCGCAGCACATTAGCTACAA
ATTGTTCTATGAAGAAATCATGTAGCTGTGCTGAAAAGCCTGTAAATATG
TTGAAAACCATACCTTCAACTTCGGGTGGCACTGACTCAAACTCACATAC
TTGTCGTGATTCCTCCCAACATCAGACGCAAGCTGGCCCTATGGATAAGA
AAGCAGGATATAGTAAAGTCAAGGACCTTGAATCAATGCTTAATTTGCAG
GCACAAATCAAATCAAAAGTCGTTTTGGAATTGAATGCCAAGCGGCAGGA
AGTTAATGAACTGCGTGATTTTATGAGCTTGCCCCTAACCACGCATGCGA
GAAAACTTGGGATTGTGAATCAAATCGCTTCCCTACGCCTTCGATTGCAG
GGTACCACGAGGCGCTTCGAACGGCTACATTTGGAGAAGAAAGTGGCTTA
CAAAGCGAGTACGATGCAAAGACGGGTGCAGCTAGAGCGGTATCGGCATC
AACAGAAGATGCGCGCTTTACAATCGCAACAATTGCACATGTTGTATCAG
CAGGCCTTCGAACGCTTTCTTAAAAAAAAAGACAGAGATCCTAGAAAAAA
ATGTCAGCAAGGGCCATACCAACATGTAAAAGAAAATACTAGGCATATAA
ATCATTCAAGCCCCGGGACGAACAACTTGCCAGAGGAGAGCTCTATAGGT
GCGGTTGCAAAGGAAGATGGAGGTTGCAGCTACCCAGTCACATTTTCGAA
AACGATTTCATCATCAGACAACATAAGCTTTGAGTCATTGCGAAAAGTGC
TTTTACCACAGACGTCCCCGAAGTCGCAGGTTTAATGCATGAATAAAACT
GTAATTGTCTTATGCGCTCCAACGTTTTTATTCAGAGCTGGTCCGGGATT
GAATTAAAAATCATTGTTAACATATTAATTGAGATTTGGTAGAGCTTTGA
AGAAAGAAATAATAAAAAACTTTGGTCGCGCTTAAA
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Coding sequence (CDS) from alignment at CM002461.1:619109..620994-

>rna3534 ID=rna3534|Name=rna3534|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at CM002461.1:619109..620994- (Nannochloropsis gaditana)
ATGCCTGCCCATTTTAATTCAGATCAGGTGAAAGACATGTTTGTTTCGGA
CGCCTCCTCGCCAGAAACAGAGGAAAACGACTCGTCGCCGCTTCCGATTG
GAGCCGATGAGGACGAAGAGAAAGAGCGTATATCTAGCGACAAACTGAAC
GACATAATGACTGCACATTTTTCTGATGATGAGGAGGGAGAGGAGGAAGA
AACAGACAGTCAGAATGGGTTAGGAAAAACCCACAGGAACTCCATCATGT
CAAAAAGAACTTCCCTCTCCAAGACTGCTGAATACGCTACTCATTTCCAC
AATGAGAAAACAATGCCTGAAATGGGAGCATCTCCTCAAGGTAGGTACGA
TGAATCAACATATTTAGATGCTGTACACCGGCAGCAAATTAGCGTGCTGG
GCGGTGACACTAGCACGTACCAAGTTGTCTCCCGTACGCCAGCAGAAACG
CTTCCACTTCAATTTGCGCCACCAGCAGCCAAAGAGGACAATTACTATAA
TGATTTGCATCATATTATCGTGCACTTGATGGCCTTAAAGCAAAATCTGC
AGGCTTCACCGAGTGAACAGTGTGGTATTCGAGCAGCCCCCAGCAACACC
AAGGAAGAAGAAGAGGGGAAGTCATCGGCTAGAAAAAATCGGCTTTGCGC
TGAGCACTTCCAAATTGGAATTAAATTAGCTGGCAAATGTGCTTTACACA
ACGAGAACCTTCGACTTCAACAGCAACTTCGAATAATGACCTCACGAGTT
TCTCAGCATGAGAAATACCTTTCGGATAAAGTCAAGGCTTTGGAAGAAGA
ATGTAGATCGCTTCGCATCGAGAATTCGGAATTGCGTGACCAACAAGCGC
GAAAGAGATCCTTGCGCAGCACATTAGCTACAAATTGTTCTATGAAGAAA
TCATGTAGCTGTGCTGAAAAGCCTGTAAATATGTTGAAAACCATACCTTC
AACTTCGGGTGGCACTGACTCAAACTCACATACTTGTCGTGATTCCTCCC
AACATCAGACGCAAGCTGGCCCTATGGATAAGAAAGCAGGATATAGTAAA
GTCAAGGACCTTGAATCAATGCTTAATTTGCAGGCACAAATCAAATCAAA
AGTCGTTTTGGAATTGAATGCCAAGCGGCAGGAAGTTAATGAACTGCGTG
ATTTTATGAGCTTGCCCCTAACCACGCATGCGAGAAAACTTGGGATTGTG
AATCAAATCGCTTCCCTACGCCTTCGATTGCAGGGTACCACGAGGCGCTT
CGAACGGCTACATTTGGAGAAGAAAGTGGCTTACAAAGCGAGTACGATGC
AAAGACGGGTGCAGCTAGAGCGGTATCGGCATCAACAGAAGATGCGCGCT
TTACAATCGCAACAATTGCACATGTTGTATCAGCAGGCCTTCGAACGCTT
TCTTAAAAAAAAAGACAGAGATCCTAGAAAAAAATGTCAGCAAGGGCCAT
ACCAACATGTAAAAGAAAATACTAGGCATATAAATCATTCAAGCCCCGGG
ACGAACAACTTGCCAGAGGAGAGCTCTATAGGTGCGGTTGCAAAGGAAGA
TGGAGGTTGCAGCTACCCAGTCACATTTTCGAAAACGATTTCATCATCAG
ACAACATAAGCTTTGAGTCATTGCGAAAAGTGCTTTTACCACAGACGTCC
CCGAAGTCGCAGGTTTAA
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Synonyms
Publications