rna3532, rna3532 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3532
Unique Name	rna3532
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	246
Alignment location	CM002461.1:613629..616646 -

Link to JBrowse

Properties


Property Name	Value
Product	histone-lysine n-methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100010g91.6133.mrna
Orig protein id	gnl\|cribi\|Naga_100010g91.6133
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:613629..616646 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g91	gene3402	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3532	rna3532-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27163.1	cds3523	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:613629..616646-
coding sequence from alignment at CM002461.1:613629..616646-

mRNA sequence

>rna3532 ID=rna3532|Name=rna3532|organism=Nannochloropsis gaditana|type=mRNA|length=246bp
ATGGCTGATCTATTGCTAGGTAAAATCAATCGGAAAAGCCTTATACAAGT
GGTCTCCCTGATAGACTTGTCAGATTTTGCTCTAGAACACTCAGATTTTG
CTCTAGAACATGCGGCGAAGATCGGACGGTTGTGTGGGAAATGGCTACAC
AAAGTCAGAAAAAAACATTTAAAAAAAGACGTTCGCTTATGGCGACACGT
ACACCTGTTTCAAGTGTCACCGTTCTTGATTTCTACTATCACCTGA

protein sequence of rna3532

>rna3532-protein ID=rna3532-protein|Name=rna3532|organism=Nannochloropsis gaditana|type=polypeptide|length=623bp
MTTLVSGLNDEHQGITSCIRAVDGVTLQVGDDVFFERESGLLEEGFVEKL
FPQDDKVMALVRYKERAWSAYIERRDVEGLLLRDQLVSKSRTRRNARPVS
RYQPQEQSGSAYGSRQSRKPKLLKGSRKSHEKKRRRRRKRLKEAARLRRA
RRERRRTLALRFLSEGLVDGVILSEQERAELMGLLSVSEAVHIREALTLS
SSESEDDNLDQSQSSEDESGSSSSSDSSSTISTFGEQDSESEAESGAESE
LGLSDVSTDSCPSEPDFLYWSRVHQPALEQLRATGRKRFGLAPKYDSEDS
DDVDEEPREMGLASTIMSWTGQERKELLREYLNRPASIARRLKTGAISYK
EWCLALQVVSEDSGGVSSLENMSAIKGVKRCDGMRTMYGAIRAPLIQEMI
RFAGVTRQDRFLDIGSGLGTVVLQMAAVTGCHATGIELEASRFTISSMLS
EELIHLMAELSTSRETGFVADLKNRIEMKNEDVRDHEETILQSTVIYFNN
HGVWFDETSSKQGEISVEHWVAKLFARTAVGTRLVILKSIPHLKGNWFSE
QMYMARSDWLTWARDAKPLFCYTKLKDTWTCEKCQHENAIVGDDDSLIWE
MRCVNSCASRAHRLRARPGQPSE

mRNA from alignment at CM002461.1:613629..616646-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3532 ID=rna3532|Name=rna3532|organism=Nannochloropsis gaditana|type=mRNA|length=3018bp|location=Sequence derived from alignment at CM002461.1:613629..616646- (Nannochloropsis gaditana)
CCGCTGCTAGCTGCGCAACTCGTAGGCCCCTCGCACACTCGTTTTGAAAT
TTGTGCAGAATGCGTCCATGAGCCCGCCTGGAGCTACCACTCGGCTTTGC
GCGCCATTGCTCCGTGGATTTCATTGGTGCGTTTTGTAATGTTTTCATTT
CGCTCCGACAAGGCGATTCGCGCGCTGGACGATTCGATCATGGGATAATA
TGCCTCCGGCATGTCTCCAAAGCGAGAGAACGGACAAGCCTGACGAGTGC
AGTTTAGGGAAAAAATATAATAGCGGGCCGGAAAAGGTACCTGACGTAAA
GTTGGGGTCAAAATGAAGGATTGAGACATTTGCGATAATACTATGAATTT
TAAAAGACGTAAATGTATATTTTAAGGGGGCGAACCTCCAGGTACCCCAT
AGCCCTCCCATCCTGAAGGCCACTCGGAGCTGTCTTGGGCAGCTTCGCCA
TGACAACCCTAGTCAGCGGACTTAATGATGAGCACCAAGGCATCACCTCA
TGCATACGTGCTGTTGACGGCGTGACACTTCAGGTGAGTGTACGCCTCGG
CAAACCGGAGACGTTCGCGCAGACGCCTCTCCTCCTTCCCGCCAACTACT
TTCATCGTCTGTGCGCTGTCACTCTTCGTTTGCGTGCTTTCCCACCACTA
TTCTGTCCATCTTGATAACTTGTTCGTAAATTGTGACCTTGTCAATCGGC
TGAAAGAGTTTTTATTCTGGTTTCATCTCATCTATTGGTCCGAGGTCATT
CGTATAGCGCCCTCGCACTCTTCACTTCTTTCACCTACCCGGGTAATATC
GGTCGCTTTTTTACATGCACAGGTTGGCGACGATGTGTTTTTCGAACGTG
AGAGTGGACTTCTAGAGGAGGGCTTTGTGGAAAAACTGTTCCCGCAAGAT
GACAAGGTCATGGCCCTGGTCCGCTACAAGGAGAGGGCGTGGTCGGCCTA
CATTGAGCGACGTGACGTTGAGGGCCTGCTCCTCAGGGACCAGCTGGTGA
GCAAAAGCCGAACGCGTCGTAATGCCCGTCCAGTATCTCGTTATCAGCCT
CAGGAGCAGTCCGGATCTGCGTACGGCTCACGTCAGTCCCGCAAACCCAA
GCTTCTGAAAGGTTCGCGCAAATCGCATGAGAAAAAGCGCCGACGTCGCC
GCAAGCGTTTGAAGGAGGCAGCTCGGCTACGCCGGGCGAGAAGAGAGCGT
CGTCGGACACTTGCTTTAAGGTTTCTGTCGGAAGGTTTAGTAGACGGCGT
GATACTGAGCGAGCAAGAGCGCGCAGAGCTGATGGGGCTTCTGAGTGTGT
CGGAAGCGGTGCACATCCGAGAGGCCTTGACGTTGTCGAGTTCCGAGTCG
GAGGACGACAATTTGGACCAAAGTCAGAGCTCTGAGGATGAGAGTGGGTC
ATCCTCGAGCTCTGATTCCTCGTCGACCATCTCCACGTTTGGCGAACAGG
ACAGCGAGTCGGAGGCGGAGAGCGGGGCCGAGAGCGAGCTGGGGCTCTCG
GATGTGTCCACCGACTCCTGCCCCAGCGAGCCGGACTTCTTGTATTGGTC
TCGAGTTCACCAACCGGCACTTGAACAGTTGCGGGCGACGGGGCGAAAGC
GATTTGGTTTGGCCCCCAAGTACGACTCAGAAGACTCGGACGACGTGGAC
GAGGAGCCGCGGGAGATGGGGCTGGCGAGCACGATCATGAGCTGGACTGG
GCAGGAGCGCAAAGAATTGCTGCGTGAGTATCTGAACCGACCGGCGTCGA
TTGCGCGACGACTGAAGACAGGGGCAATCTCATACAAGGAGTGGTGTCTG
GCCTTGCAGGTCGTGAGCGAGGACTCGGGCGGGGTAAGCAGCCTGGAGAA
CATGAGTGCCATTAAGGGGGTGAAGCGTTGCGACGGCATGCGGACCATGT
ACGGAGCTATTCGGGCCCCACTCATACAAGAGATGATCCGTTTCGCAGGA
GTGACGAGGCAAGACCGCTTTCTGGATATTGGCTCGGGGCTGGGTACAGT
GGTCCTGCAGATGGCTGCAGTCACAGGTTGCCATGCAACAGGCATTGAGT
TGGAGGCATCTCGCTTCACAATATCTTCGATGCTGAGCGAGGAACTGATC
CATCTGATGGCGGAACTGAGCACCAGTAGAGAGACAGGCTTTGTGGCAGA
CTTGAAGAATCGCATCGAGATGAAAAATGAAGACGTTCGGGACCACGAGG
AGACCATCTTACAGTCAACCGTCATCTACTTTAACAACCACGGGGTCTGG
TTCGATGAAACTTCCTCCAAACAGGGCGAAATATCAGTGGAACATTGGGT
TGCAAAGCTTTTCGCCAGGACGGCCGTAGGCACGCGCCTTGTCATTTTAA
AAAGCATCCCTCACCTGAAGGGCAACTGGTTTTCCGAGCAAATGTACATG
GCTCGCTCAGACTGGTTGACCTGGGCCCGGGATGCCAAGCCTCTCTTCTG
CTACACGAAGCTAAAAGACACGTGGACGTGTGAGAAGTGTCAGCACGAGA
ACGCGATCGTAGGCGATGACGACTCGCTCATCTGGGAGATGAGATGTGTC
AATAGCTGCGCCTCTCGCGCACATCGCCTCCGTGCCCGTCCGGGGCAGCC
GTCCGAGTGAAAGATTGCACGCGGTGAGAGCATGTCCGTATCGTGATGGC
ACTTGCGATGTCCTTATGTGTAGGCTTTCGAAAGAGTCCCCGCGGTGTAC
GGTGGAAATCATGTGGCAGCAGGCACGTGGCCACGTGTCTAGGACTTTTA
CAGTAAAAGTATAACAATGGAAAAACTTAAAATTGATTTACTATAGCATC
TTTCAGGTGATAGTAGAAATCAAGAACGGTGACACTTGAAACAGGTGTAC
GTGTCGCCATAAGCGAACGTCTTTTTTTAAATGTTTTTTTCTGACTTTGT
GTAGCCATTTCCCACACAACCGTCCGATCTTCGCCGCATGTTCTAGAGCA
AAATCTGAGTGTTCTAGAGCAAAATCTGACAAGTCTATCAGGGAGACCAC
TTGTATAAGGCTTTTCCG

Coding sequence (CDS) from alignment at CM002461.1:613629..616646-

>rna3532 ID=rna3532|Name=rna3532|organism=Nannochloropsis gaditana|type=CDS|length=3744bp|location=Sequence derived from alignment at CM002461.1:613629..616646- (Nannochloropsis gaditana)
GTTGGCGACGATGTGTTTTTCGAACGTGAGAGTGGACTTCTAGAGGAGGG
CTTTGTGGAAAAACTGTTCCCGCAAGATGACAAGGTCATGGCCCTGGTCC
GCTACAAGGAGAGGGCGTGGTCGGCCTACATTGAGCGACGTGACGTTGAG
GGCCTGCTCCTCAGGGACCAGCTGGTGAGCAAAAGCCGAACGCGTCGTAA
TGCCCGTCCAGTATCTCGTTATCAGCCTCAGGAGCAGTCCGGATCTGCGT
ACGGCTCACGTCAGTCCCGCAAACCCAAGCTTCTGAAAGGTTCGCGCAAA
TCGCATGAGAAAAAGCGCCGACGTCGCCGCAAGCGTTTGAAGGAGGCAGC
TCGGCTACGCCGGGCGAGAAGAGAGCGTCGTCGGACACTTGCTTTAAGGT
TTCTGTCGGAAGGTTTAGTAGACGGCGTGATACTGAGCGAGCAAGAGCGC
GCAGAGCTGATGGGGCTTCTGAGTGTGTCGGAAGCGGTGCACATCCGAGA
GGCCTTGACGTTGTCGAGTTCCGAGTCGGAGGACGACAATTTGGACCAAA
GTCAGAGCTCTGAGGATGAGAGTGGGTCATCCTCGAGCTCTGATTCCTCG
TCGACCATCTCCACGTTTGGCGAACAGGACAGCGAGTCGGAGGCGGAGAG
CGGGGCCGAGAGCGAGCTGGGGCTCTCGGATGTGTCCACCGACTCCTGCC
CCAGCGAGCCGGACTTCTTGTATTGGTCTCGAGTTCACCAACCGGCACTT
GAACAGTTGCGGGCGACGGGGCGAAAGCGATTTGGTTTGGCCCCCAAGTA
CGACTCAGAAGACTCGGACGACGTGGACGAGGAGCCGCGGGAGATGGGGC
TGGCGAGCACGATCATGAGCTGGACTGGGCAGGAGCGCAAAGAATTGCTG
CGTGAGTATCTGAACCGACCGGCGTCGATTGCGCGACGACTGAAGACAGG
GGCAATCTCATACAAGGAGTGGTGTCTGGCCTTGCAGGTCGTGAGCGAGG
ACTCGGGCGGGGTAAGCAGCCTGGAGAACATGAGTGCCATTAAGGGGGTG
AAGCGTTGCGACGGCATGCGGACCATGTACGGAGCTATTCGGGCCCCACT
CATACAAGAGATGATCCGTTTCGCAGGAGTGACGAGGCAAGACCGCTTTC
TGGATATTGGCTCGGGGCTGGGTACAGTGGTCCTGCAGATGGCTGCAGTC
ACAGGTTGCCATGCAACAGGCATTGAGTTGGAGGCATCTCGCTTCACAAT
ATCTTCGATGCTGAGCGAGGAACTGATCCATCTGATGGCGGAACTGAGCA
CCAGTAGAGAGACAGGCTTTGTGGCAGACTTGAAGAATCGCATCGAGATG
AAAAATGAAGACGTTCGGGACCACGAGGAGACCATCTTACAGTCAACCGT
CATCTACTTTAACAACCACGGGGTCTGGTTCGATGAAACTTCCTCCAAAC
AGGGCGAAATATCAGTGGAACATTGGGTTGCAAAGCTTTTCGCCAGGACG
GCCGTAGGCACGCGCCTTGTCATTTTAAAAAGCATCCCTCACCTGAAGGG
CAACTGGTTTTCCGAGCAAATGTACATGGCTCGCTCAGACTGGTTGACCT
GGGCCCGGGATGCCAAGCCTCTCTTCTGCTACACGAAGCTAAAAGACACG
TGGACGTGTGAGAAGTGTCAGCACGAGAACGCGATCGTAGGCGATGACGA
CTCGCTCATCTGGGAGATGAGATGTGTCAATAGCTGCGCCTCTCGCGCAC
ATCGCCTCCGTGCCCGTCCGGGGCAGCCGTCCGAGTGAATGACAACCCTA
GTCAGCGGACTTAATGATGAGCACCAAGGCATCACCTCATGCATACGTGC
TGTTGACGGCGTGACACTTCAGGTTGGCGACGATGTGTTTTTCGAACGTG
AGAGTGGACTTCTAGAGGAGGGCTTTGTGGAAAAACTGTTCCCGCAAGAT
GACAAGGTCATGGCCCTGGTCCGCTACAAGGAGAGGGCGTGGTCGGCCTA
CATTGAGCGACGTGACGTTGAGGGCCTGCTCCTCAGGGACCAGCTGGTGA
GCAAAAGCCGAACGCGTCGTAATGCCCGTCCAGTATCTCGTTATCAGCCT
CAGGAGCAGTCCGGATCTGCGTACGGCTCACGTCAGTCCCGCAAACCCAA
GCTTCTGAAAGGTTCGCGCAAATCGCATGAGAAAAAGCGCCGACGTCGCC
GCAAGCGTTTGAAGGAGGCAGCTCGGCTACGCCGGGCGAGAAGAGAGCGT
CGTCGGACACTTGCTTTAAGGTTTCTGTCGGAAGGTTTAGTAGACGGCGT
GATACTGAGCGAGCAAGAGCGCGCAGAGCTGATGGGGCTTCTGAGTGTGT
CGGAAGCGGTGCACATCCGAGAGGCCTTGACGTTGTCGAGTTCCGAGTCG
GAGGACGACAATTTGGACCAAAGTCAGAGCTCTGAGGATGAGAGTGGGTC
ATCCTCGAGCTCTGATTCCTCGTCGACCATCTCCACGTTTGGCGAACAGG
ACAGCGAGTCGGAGGCGGAGAGCGGGGCCGAGAGCGAGCTGGGGCTCTCG
GATGTGTCCACCGACTCCTGCCCCAGCGAGCCGGACTTCTTGTATTGGTC
TCGAGTTCACCAACCGGCACTTGAACAGTTGCGGGCGACGGGGCGAAAGC
GATTTGGTTTGGCCCCCAAGTACGACTCAGAAGACTCGGACGACGTGGAC
GAGGAGCCGCGGGAGATGGGGCTGGCGAGCACGATCATGAGCTGGACTGG
GCAGGAGCGCAAAGAATTGCTGCGTGAGTATCTGAACCGACCGGCGTCGA
TTGCGCGACGACTGAAGACAGGGGCAATCTCATACAAGGAGTGGTGTCTG
GCCTTGCAGGTCGTGAGCGAGGACTCGGGCGGGGTAAGCAGCCTGGAGAA
CATGAGTGCCATTAAGGGGGTGAAGCGTTGCGACGGCATGCGGACCATGT
ACGGAGCTATTCGGGCCCCACTCATACAAGAGATGATCCGTTTCGCAGGA
GTGACGAGGCAAGACCGCTTTCTGGATATTGGCTCGGGGCTGGGTACAGT
GGTCCTGCAGATGGCTGCAGTCACAGGTTGCCATGCAACAGGCATTGAGT
TGGAGGCATCTCGCTTCACAATATCTTCGATGCTGAGCGAGGAACTGATC
CATCTGATGGCGGAACTGAGCACCAGTAGAGAGACAGGCTTTGTGGCAGA
CTTGAAGAATCGCATCGAGATGAAAAATGAAGACGTTCGGGACCACGAGG
AGACCATCTTACAGTCAACCGTCATCTACTTTAACAACCACGGGGTCTGG
TTCGATGAAACTTCCTCCAAACAGGGCGAAATATCAGTGGAACATTGGGT
TGCAAAGCTTTTCGCCAGGACGGCCGTAGGCACGCGCCTTGTCATTTTAA
AAAGCATCCCTCACCTGAAGGGCAACTGGTTTTCCGAGCAAATGTACATG
GCTCGCTCAGACTGGTTGACCTGGGCCCGGGATGCCAAGCCTCTCTTCTG
CTACACGAAGCTAAAAGACACGTGGACGTGTGAGAAGTGTCAGCACGAGA
ACGCGATCGTAGGCGATGACGACTCGCTCATCTGGGAGATGAGATGTGTC
AATAGCTGCGCCTCTCGCGCACATCGCCTCCGTGCCCGTCCGGGGCAGCC
GTCCGAGTGAATGACAACCCTAGTCAGCGGACTTAATGATGAGCACCAAG
GCATCACCTCATGCATACGTGCTGTTGACGGCGTGACACTTCAG

Synonyms

Publications