rna3531, rna3531 (mRNA) Nannochloropsis gaditana

Overview
Namerna3531
Unique Namerna3531
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length675
Alignment locationCM002461.1:613599..613844 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g90.6192.mrna
Orig protein idgnl|cribi|Naga_100010g90.6192
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:613599..613844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g90gene3401Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3531rna3531-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27222.1cds3522Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3531 ID=rna3531|Name=rna3531|organism=Nannochloropsis gaditana|type=mRNA|length=675bp
ATGCCCTCTAAGTTTGATTTTAGCAAAGGCTTCGGTGACCTAGAGAAGCA
TCTAAGCACGCGCTCGTACATCGAGGGTTTCTCCTTCAGCGCAGCGGACT
CATCGACCTTCAGCGCTCTTCCGTCCGTTCCTGTGGCCTCCTCCCACCCT
AATGCCTACCGGTGGTATCTGCACATTGCATCGCTTACAGGATTGAAAAA
GATTTTGGGTGGAGATGGCCGCGCCGTGGCCTCAGCCTCCAAGAAGGCGA
GCGCGCCTGCAGTGGCCACGGACGACGATGACATGGACCTTTTCGGGGAC
GACGATGAAGATTCATCGGCAAAGCCTACCATGTCTCGCGCCGAGCAAGT
GGCAGCTATGAAGGCGGAGAAGGAGGCTAAGGAAAAGGCCAACAAAAAGC
GCGATCGATCTCAGATTGTTTTGGAAGTCAAACCAACTGATACAGAGGTA
AATTTGGATGAACTCTATAAAACCATCAAGGAAGAAATTTGCCCGTCAGG
CCTTACCTGGGGCGAGGGCTACAACAAGTCACCGGTAGCCTTCGGCATCT
TCAAATTGATCATTTCCATGGTCGTGTACGACGACGAAGTCTCTATTGAC
GATGTTGTGGAAAAGATTGAGGCCATGGAAGATAGCGTGCAGTCAGTGGA
CATCAACAGCTTCAACAAGCTGTAA
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protein sequence of rna3531

>rna3531-protein ID=rna3531-protein|Name=rna3531|organism=Nannochloropsis gaditana|type=polypeptide|length=81bp
MADLLLGKINRKSLIQVVSLIDLSDFALEHSDFALEHAAKIGRLCGKWLH
KVRKKHLKKDVRLWRHVHLFQVSPFLISTIT
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mRNA from alignment at CM002461.1:613599..613844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3531 ID=rna3531|Name=rna3531|organism=Nannochloropsis gaditana|type=mRNA|length=246bp|location=Sequence derived from alignment at CM002461.1:613599..613844+ (Nannochloropsis gaditana)
ATGGCTGATCTATTGCTAGGTAAAATCAATCGGAAAAGCCTTATACAAGT
GGTCTCCCTGATAGACTTGTCAGATTTTGCTCTAGAACACTCAGATTTTG
CTCTAGAACATGCGGCGAAGATCGGACGGTTGTGTGGGAAATGGCTACAC
AAAGTCAGAAAAAAACATTTAAAAAAAGACGTTCGCTTATGGCGACACGT
ACACCTGTTTCAAGTGTCACCGTTCTTGATTTCTACTATCACCTGA
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Coding sequence (CDS) from alignment at CM002461.1:613599..613844+

>rna3531 ID=rna3531|Name=rna3531|organism=Nannochloropsis gaditana|type=CDS|length=246bp|location=Sequence derived from alignment at CM002461.1:613599..613844+ (Nannochloropsis gaditana)
ATGGCTGATCTATTGCTAGGTAAAATCAATCGGAAAAGCCTTATACAAGT
GGTCTCCCTGATAGACTTGTCAGATTTTGCTCTAGAACACTCAGATTTTG
CTCTAGAACATGCGGCGAAGATCGGACGGTTGTGTGGGAAATGGCTACAC
AAAGTCAGAAAAAAACATTTAAAAAAAGACGTTCGCTTATGGCGACACGT
ACACCTGTTTCAAGTGTCACCGTTCTTGATTTCTACTATCACCTGA
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Synonyms
Publications