rna3523, rna3523 (mRNA) Nannochloropsis gaditana

Overview
Namerna3523
Unique Namerna3523
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length735
Alignment locationCM002461.1:603768..604215 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g81.6164.mrna
Orig protein idgnl|cribi|Naga_100010g81.6164
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:603768..604215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g81gene3393Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3523rna3523-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27194.1cds3514Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3523 ID=rna3523|Name=rna3523|organism=Nannochloropsis gaditana|type=mRNA|length=735bp
ATGGACGTGACAGACGCATGGTTGGCGGCAGTGGCGAGTGCTAGATGGAC
AACAAAGGCGGCCTCTCCTGGCTTCCCCTCCTCGACCTGTGTAAAGTCCC
GCACAGCTTTTGCAACTGCCTCGACTTCGACTTTTCCAAATAAGTCAGCC
GACGCCACTCATGGGATCATAACAGACCCTTTTACGCAGCAGGCTCGTGA
GGTTCTGGACAGCATTCGGACCAAGGAAGAAATATTAAAAAAAAATCGGG
GCCGCTACGTAGATCCGTATCGATATGTGCCGTCGAGGGCTGCAAACATG
ACGGACCTAGAACGTGACCAAATAGATCAGGTCATGGCCTCATTCATCAT
CAAATGTGGCTCACAAATTGAAATACTTCGTTGCGCGCTTGCTGAAGCGA
GTTCCCTCGAAGCTGGAGGAGGGAACGCCGACCTTGTGGGAGGTGAAGGA
TCTCGACTGGCCCATCACGGGAAGGTGGTGGCCTACCTTGCAGAGAGGTT
GCAAGATCTAGGTAACACGTTACAAAACCTTCAGGCCCGACGACGGCACT
TGAATGGGCTCGTGCCGTCAAGTTCCGGTGCTGATGCAGGGCAAGCTTGT
CGTCCAGGCTCAACGACAAGGACGCTTACTACACCATCTTGGAATTCCTT
CGCCAAGGCAGGCGGCTCACACAAAGCAAAAGGGCGGCCGATCATGGCTC
CTAACAAGGTTGGTTCCGCATTCGTGCGATTTTGA
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protein sequence of rna3523

>rna3523-protein ID=rna3523-protein|Name=rna3523|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MRPIFSTFRVKEETSKILNKAYCHELTCIHCIRRLLRTLPDIIPRCRFFS
ISGAAIPDGCRGFYDRLLKIHERVEAAQNEALPSTRSTSNYRMLTTTLVK
TS
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mRNA from alignment at CM002461.1:603768..604215+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3523 ID=rna3523|Name=rna3523|organism=Nannochloropsis gaditana|type=mRNA|length=448bp|location=Sequence derived from alignment at CM002461.1:603768..604215+ (Nannochloropsis gaditana)
ATGAGACCGATTTTCTCAACCTTCCGTGTAAAGGAAGAAACATCTAAGAT
CCTGAACAAAGCTTATTGTCATGAGCTAACTTGTGTCACAAGCTCTCGCG
ACGCCTTTGCTCCTTAAAGGCGGTCAGGCCCTGGGGAGGTTCTTGCGGAG
TATGCCGTCCTTTGTTGGCGTTTTCTTTGCCAACATACATGACCATGAAC
AACACATCTAAAATCATCAATAGATCCATTGTATTCGGAGGCTTCTACGG
ACCTTGCCTGATATCATACCGCGATGTCGATTCTTTTCTATATCCGGCGC
GGCTATCCCCGATGGTTGCCGAGGCTTTTACGATCGTCTGCTAAAGATAC
ATGAGCGCGTCGAAGCTGCACAAAATGAAGCTCTTCCATCAACAAGATCA
ACATCAAATTATCGCATGCTTACGACTACTCTTGTCAAAACTAGCTAG
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Coding sequence (CDS) from alignment at CM002461.1:603768..604215+

>rna3523 ID=rna3523|Name=rna3523|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002461.1:603768..604215+ (Nannochloropsis gaditana)
ATGAGACCGATTTTCTCAACCTTCCGTGTAAAGGAAGAAACATCTAAGAT
CCTGAACAAAGCTTATTGTCATGAGCTAACTTGTATCCATTGTATTCGGA
GGCTTCTACGGACCTTGCCTGATATCATACCGCGATGTCGATTCTTTTCT
ATATCCGGCGCGGCTATCCCCGATGGTTGCCGAGGCTTTTACGATCGTCT
GCTAAAGATACATGAGCGCGTCGAAGCTGCACAAAATGAAGCTCTTCCAT
CAACAAGATCAACATCAAATTATCGCATGCTTACGACTACTCTTGTCAAA
ACTAGCTAGATGAGACCGATTTTCTCAACCTTCCGTGTAAAGGAAGAAAC
ATCTAAGATCCTGAACAAAGCTTATTGTCATGAGCTAACTTGTATCCATT
GTATTCGGAGGCTTCTACGGACCTTGCCTGATATCATACCGCGATGTCGA
TTCTTTTCTATATCCGGCGCGGCTATCCCCGATGGTTGCCGAGGCTTTTA
CGATCGTCTGCTAAAGATACATGAGCGCGTCGAAGCTGCACAAAATGAAG
CTCTTCCATCAACAAGATCAACATCAAATTATCGCATGCTTACGACTACT
CTTGTCAAAACTAGCTAG
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Synonyms
Publications