rna3521, rna3521 (mRNA) Nannochloropsis gaditana

Overview
Namerna3521
Unique Namerna3521
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1209
Alignment locationCM002461.1:601489..602636 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g79.6120.mrna
Orig protein idgnl|cribi|Naga_100010g79.6120
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:601489..602636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g79gene3391Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3521rna3521-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27150.1cds3512Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3521 ID=rna3521|Name=rna3521|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
ATGAGTCGATGCACAAATCAAAATTATCACTTGTCTTTTTTACGCAGGAG
TATTTTTGCTTCGGGAAATTTTCCTGAAGCTGAAATTTTGTACGACAAGG
CCATCAAAGTCAAGCCCGATGCGGTTCTATACGCCAACCGTGCCGCTGTT
CGCCTCGGGCTCAATCTTGCGGACTCTGCACTGGCAGACGCAACTAAGGC
TATCGAGCTGGACGCAGAGTACAGTAAAGCATACTACCGGAAAGGACAGG
CACACAATGTCCGAAAAGAGTTTGAGGCGGCCTTTCAGGCTTTTGAAAGA
GGTATTGAACTGGACCCAAGCAACAAAACCTTCAGAGAGTGCGCATCCGC
AGCCAAGGAGGCTGCTGCCAAGGCCAGGGCCATACAAAGTCTCTCCGCTG
ACGAGTCATCCCAAAAGCCCGGCCAGTCTATTTCTGATTCCACGAAAAGC
AAGGGGCCTTCAAATAGCATGTCTCCGGTCTCTGCCCCTCCGCCCTCCAA
AAAGGCAGCTAGCAAGTCCGCGGGAGAAAGGATGGTGGACGGGGACGGGG
ACCAGAAGGATGAGAAAAACTCATGGTCCGAGAACATGCGGGGCTACAAG
ATTCTGGAGGACGGGCGCAAGACCACGTACTTCAACAACGTGCTCTCCGA
GGATGCGAAGCGCCTGATAGGTGACATCGCGCCCAAAAAGATAGAGGCGC
CCGTTGGCACTGGGAATCGAGGAACGGAGGGGACAGCGGGCTCGGCATGG
AACTATGCTGGCACTTTCGAAGAGCGGAACATGACGGACTGGGCGAAGGG
TCGTCTACAGGAGCTGCTCGGAGAGTGCAGATTTCCTATCCCAGCCAGAC
ACGTCGGCGCAGGCCTCGAGGAAGGCGCTGTAATTGAAGTTAAGAAGGTA
ACGGGCTTGGAGGGGGATGCGGCCGTGACCTTTGTAAGAGGCAAGAAGAA
GTACCTATACGACTTTGTCTTCACGTTGGAGTGGGAGGCTGGACTTGCGG
GCGGTGCAAAGGCTAAGGGGACACTCAGGTATCCGGATGTAACTCCCGAC
AACGACGACGAGTACGACACCCTCTTGGAGGTGGATCAACTCACACCGCC
AGAGGCGCGCTCACTAATCGACGAATTTGTGAAGTCTTCAAGAACCGGGT
TGCAAGGAGTGGTGCGAGAGAAGCTGCGGCTCTTTATGGCTGACTTCCAG
GCCTTCTAG
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protein sequence of rna3521

>rna3521-protein ID=rna3521-protein|Name=rna3521|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MAAVGYIRKRLRVIQKNAFLDVLTKGIHTFCTLECGLNVPNESNLVQFWC
ARSWNKGAFENVWKRKSGRAGAVAVHCRRAGRKTVLYIRALLDRSQGGQC
IA
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mRNA from alignment at CM002461.1:601489..602636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3521 ID=rna3521|Name=rna3521|organism=Nannochloropsis gaditana|type=mRNA|length=1148bp|location=Sequence derived from alignment at CM002461.1:601489..602636+ (Nannochloropsis gaditana)
GCTGCTTTCTTTTCATCCGTTTCCGGCTCAGCAGTCAATACATCGGAGTG
TCGTCCTCCGAGAATTGGATGATTTTCAATCATTGTAACAAGCTTTTTGA
ATCACAAGGCGTAGCCCCGGGCAAGGGAGCCAAGGTGATGAGATGGCAGC
TGTGGGGTATATTCGAAAGAGACTCCGAGTTATACAAAAAAATGCTTTTC
TTGACGTTTTGACGAAGGGAATTCACACATTTTGCACTTTGGAGTGTGGA
CTGAACGTGCCAAACGAAAGCAACCTCGTACAATTTTGGTGCGCGCGGTC
GTGGAACAAGGGCGCATTCGAGAACGTGTGGAAGCGAAAGTCAGGCCGCG
CAGGCGCCGTCGCCGTACACTGCCGGCGAGCCGGGCGGAAGACAGTTCTT
TATATCAGGGCATTACTTGATCGATcacaaggagggcaatgcATAGCATG
AGCACGAAACTAAACATGGTCTGGCTGGCTTTACTGTTTCTCTCGAGCGT
CGCCAAGAGCTCTTTGTTGGCGTGACCTAAATTCTCGTGCGTGCCTCGAG
CCGCTTCATGAACCTCTTCTACTTGGCCCTGTTGCTCTAAAAGCTCTCCG
GTAAAGAGTCCCAGAAGTTGCGAcagctcctccattttcccttccatgAT
CCTGAGAAGTTACGGAATATTGTATGGACAGGGTGGGAGGTTATTGAGAT
GCGAGAGTGCACGGAATGCATGGAATATACGCAACATTTCAACAAATTTC
TCACTACTCATCCACTTAATCATAGTATATTAAATTACTTATGAATCTCC
TTCGAGCTGGATTGTCAATTTGATGATGCGCGACGGTTCTTCAATGACTT
TGATGCACCAAAACTTACTTGACGTCGTGTAACTCGTTGTTAAGCCGCAC
TTTGAGTACTCGGTTCTCGTGCTCAAGCATAGCTTGCCTCTGTACTTGCT
CCCCGACGTCTCGCCCTGCTTCACGCGCTGCCAACCGGCGTCTAAAAGCC
TCATCTTCATCGCTCTCAAGCTTGTGAATGTGAAGGATGAAAATACAGTC
ATGTAAGCTTCCAGAGCTCAACACAGGGTACTTATCTCCCAGAAATGGAG
AGACTGAAAACCTGATGAACAAAAGCAATTTCAAAATCGCACGAATGC
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Coding sequence (CDS) from alignment at CM002461.1:601489..602636+

>rna3521 ID=rna3521|Name=rna3521|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at CM002461.1:601489..602636+ (Nannochloropsis gaditana)
ATGGCAGCTGTGGGGTATATTCGAAAGAGACTCCGAGTTATACAAAAAAA
TGCTTTTCTTGACGTTTTGACGAAGGGAATTCACACATTTTGCACTTTGG
AGTGTGGACTGAACGTGCCAAACGAAAGCAACCTCGTACAATTTTGGTGC
GCGCGGTCGTGGAACAAGGGCGCATTCGAGAACGTGTGGAAGCGAAAGTC
AGGCCGCGCAGGCGCCGTCGCCGTACACTGCCGGCGAGCCGGGCGGAAGA
CAGTTCTTTATATCAGGGCATTACTTGATCGATcacaaggagggcaatgc
ATAGCATGA
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Synonyms
Publications