rna3515, rna3515 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3515
Unique Name	rna3515
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2252
Alignment location	CM002461.1:591538..593490 +

Link to JBrowse

Properties


Property Name	Value
Product	microtubule-associated protein rp eb family member 1
Orig transcript id	gnl\|cribi\|Naga_100010g74.6162.mrna
Orig protein id	gnl\|cribi\|Naga_100010g74.6162
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:591538..593490 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g74	gene3386	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3515	rna3515-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27192.1	cds3506	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:591538..593490+
coding sequence from alignment at CM002461.1:591538..593490+

mRNA sequence

>rna3515 ID=rna3515|Name=rna3515|organism=Nannochloropsis gaditana|type=mRNA|length=2252bp
GCGTGATCCGCCCTGTTTCTATGTTCCTCGAGCCGGGTGCGCCTTTCGGG
TAGCGAGGAAAGCCAGGAGGATCAAGCACAATGTATTTTAAGGTTTTTTT
ATTATTTGTAGAATCATCTTCGTGCACTTACGGAGTCGAAACTCACAATG
TCACAGTGCTAAAGAAGATGCTGGTGCATTGCCATCTCGCCGGTCGACAG
AGATTGCTCCTGCGGTCCGGCTCCCCCAAGCCCTCTCTGTTGACATTGCT
CCGTTTTGTTCGCCGTCTCCCATTAGAGCGCAGTCTCAGCACTGATGACG
GCAACACTACTCACAGCGGTACTATAAAATTGGACAGTCAGCGCCGCGTC
TTGCAGCGTTGTGACGAGTTGCAAAGCTATCTTCAGCCCATCAATGACCG
TTTGCGAGGGCCTCTGGAAAAATGTAGCGACAAGGCACCTTTGCTTCCGT
TCGTATTTTTGCTGGGCAATCATAGTAGTGGCAAGAGTTCTTTCGTCAAT
TATGTGTGTAATAGGCCCATCCAGACAGCAGGTGTCGCACCGACAGATGA
CAGCTTCACCATCATCGCTCCCGGACCCACGGATATCGATCAGGACGGCC
CTTCGACCATCGGCGACCCCGACATGGGCTTTGCAGGCCTTCGCCACTTT
GGGCCCGACCTGATCCATCACACTCAGCTCAAGATCCGCGCGGGCTTGGC
GACAACCGAATTCATGCTCGTGGATTCACCGGGAATGATCGACAGCCCAC
ATGCCTCCGCAAGCCAGCCGAGCCCCTCCTCGCTCATCAGCGCCTCAGAC
AAGGGAGATAATACGCGTTCTGCCAGAAATCACTTGGATCGCGGCTACGA
CTTTCAAGGCGTCTGCAGGTGGTTCGCTGACCGCGCCGACGTGATTCTTC
TCTTTTTCGACCCTGATAAACCGGGGACTACAGGGGAAACGCTGTCCATC
CTGACCCAGTCTTTGGCGGGTATGGACCACAAGCTCTACATCGTACTGAA
TAAAGCTGATCAATTTAGAAAAATCCACGACTTTGCTCGAGCTTATGGCT
CCTTGTGCTGGAATCTGTCCAAGGTCATTCCTCGAAAAGATTTGCCCCGC
ATCTATACCATGTGCCTGCCAGCAGCGTATCAGCGACAGCAAACTTCCCG
TTCATCAAGACCCGCGGCCTTGGGTATTGAATCAGAGATAGAGGGCCCGT
CGTCGGGGCTAGGACTGGCAGACCTGGAGAGGAGTCGGGAGGAAGTTGTG
GGCGAGGTGCTGAAGGCCCCTAAGCGCCGCATCGACAACGTGATCACTCG
TCTCGCTGATTCCGTCCATCTTGTGCAAATGCACGCTTTAGTCCTGGAAG
CTCTCCGCAACGACTTTGCTCGTGAGCTTTGGAGATTTCGAGCGGGCGCT
GCGAGTCTATGCCTAGCTGGCATGGGAGCTGTTGGGGGGGGTATGTACTT
GGGAGTGGCGTTCCAGACCATATTGGCTTTTTCTGTGTTGTATGCGCTCG
GGGCCGGAGGCTTTGTTTACGCCAATGAAAAGATGCTGAAAGAGCATGCA
GCCGTTCTGGCCAGCCCCGAGGGCCTGAGACTGATTTTTGAGCGCCTGTA
TGCGCGGCCCGTGATGGAGGGCGACGAGTTTGTGAACTCCTTGTGGAAGC
GCACGTTTCCGTCTCTGCAGATCATGCTGAACACGCAAGTTGGGCGGGAC
TTAGGAAAGCTTCCCAAGGTAAGCAAAGCGGAGCTCCAAGAGATTCAGTG
CATACTCGAGGAGGAAGTTCCCGCGCTCCGGCGTCTCGCCGCTCCTGTGT
CTTGGACCTTTAGCAAGTACACCAAAGACAGGGACGGTATGCCGGAGAGA
GGTGGCAAATTTGGTGAAATCGGCCAGGTTCGCCCGTACTGTCATGGTAG
ACAAGGGAGAAATCATGCATCGACGCATGAAAATTACCATTCGTGGGGAA
GAGCGTGCTTCCTTCCTTAGTAATGGAAAGAGAAGGAAATTAAAGTAGTC
GGGTGCACGTTTAAAGTATCTTGAAAAAAAACTTTGTGAGGCTACTGATT
ATCGATTGCGATCTAGCTAGAGCGAACGCACGCCTTTTATCAATTGGAAG
ACCTCTTACAATGTGTACATGGCAATGGAAGCCTGGACAAATTACTCCAC
ACGAGGATCATAAGAGCTTTGCCGATTACACAGGAAAGTCCCATACCACG
TTGTGAGCCCATGTTGCTCAGTCGTGACAACCCTATCTGTCATCCGTGCC
GA

protein sequence of rna3515

>rna3515-protein ID=rna3515-protein|Name=rna3515|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MKQKPRLCRLCSSPGKHFSIYQRFKQSKKGYKMTTSIGMMDAGYFVGRKE
IVDWINETLQLNLTKVEQTASGAVACQLLDRIYPGKVPLNKVNWEAKLDY
EFLSNYKLLQTAFTKLQIDKHLPVEKLVRAKYQDNLEFMQWFKRFYELNN
PALDYDPVVARAGGKGAGGPARTIPPAAAPFCSSTRTGNMPSNSLKSRPS
SRSIGSSTGSSSGNGGARDKENSGGAIATSSSHGGRNVTTAAAATVADEA
LLRKAENLAQENTTLQATIEGLEKERDFYFEKLTVVEEMLQERQAAADEN
FSQEASLLIEEIFKVLYATENATGLSDCDEPCSEAAAAVEAPTAVV

mRNA from alignment at CM002461.1:591538..593490+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3515 ID=rna3515|Name=rna3515|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp|location=Sequence derived from alignment at CM002461.1:591538..593490+ (Nannochloropsis gaditana)
GGCAGATTTTGCCTTGCCTCCCGCATGCGAAGTGGAAGGCACAGCGCTTG
CttgggggagggactggTGTGCGTTACATTGTGTGTGTGAATTCCGCGGA
AGGGACAGCTCTTACCAACGTGGTCAATCGTGTCTTCGGAGGCTTCCCCC
AAAATTGACGTGACATCTCAACAACCATATGAAACAGAAACCTCGCCTTT
GCCGTCTTTGCTCCTCACCAGGCAAGCACTTTTCTATCTACCAACGATTC
AAGCAAAGCAAAAAGGGTTACAAGATGACAACGTCAATCGGTAGGCTTTG
AAGTAGTCTTTGGGACGTCCAAACTCCTGACAACATCTCGACTCCTAACG
TGGCATTCCTAGTGGCCTAGTGGTGCTCTTTCCGTTCGTATAATTGAATG
CTTTCAGGCAATCGTGCGCGTTATTCAAGTAAAGACGTAATGTAGCTTGC
CTGAATTTTCGAAGCTACTATTCTTCGTCGCGTCTTGTATACACTTGTCC
GGTAGCACCCCGACCCCAACTTATCACGGAATTGCTTGGCCCCACTCTGT
GTTTCTCCAGGTCCCCTATTTTCCGCTTTGCCTTGCCGCTTACCGCTCCT
TTTCATTGCATCGTAACACCAATGTCGGCGATCGATTGGTCGTACCATGT
TGCTCATGTTACACAACACCTTCCGATAGGCATGATGGACGCAGGTTACT
TCGTGGGCCGCAAGGAAATTGTTGACTGGATAAATGAAACATTGCAGCTG
AATCTCACCAAAGTTGAGCAGACAGCTTCAGGTGCTGTGGCCTGCCAGCT
ACTAGACCGCATCTATCCGGGAAAGGTGCCTTTGAATAAAGTTAATTGGG
AAGCCAAGTTGGACTACGAGTTCCTTAGTAACTATAAGCTTCTCCAAACT
GCATTCACCAAGCTTCAAATTGACAAGCATTTGCCAGTTGAGAAATTGGT
GCGTGCTAAATACCAGGATAATTTAGAATTTATGCAATGGTTCAAGCGGT
TCTATGAGCTCAACAATCCCGCCCTCGACTACGACCCCGTGGTTGCCCGC
GCCGGAGGCAAAGGCGCCGGAGGACCTGCCCGCACCATACCTCCTGCGGC
TGCTCCCTTCTGCTCAAGCACGCGGACGGGAAATATGCCAAGCAATTCTC
TTAAAAGCCGACCTTCATCTCGAAGCATTGGTAGCAGCACTGGCAGCTCC
TCGGGCAATGGTGGCGCCCGCGACAAGGAAAACAGCGGCGGGGCGATTGC
TACATCGTCGAGTCATGGCGGGAGAAATGTCACGACGGCAGCCGCCGCAA
CtgtggcggacgaggcgcTACTGCGAAAAGCGGAGAACTTGGCGCAGGAG
AACACGACGTTGCAGGCGACCATCGAGGGCCTGGAAAAGGAGCGAGACTT
TTACTTCGAGAAACTGACAGTAGTGGAGGAAATGCTGCAGGAACGGCAAG
CAGCAGCGGATGAGAATTTCTCGCAGGAGGCGTCTCTTCTGATCGAAGAG
ATCTTTAAGGTCCTATATGCGACGGAAAACGCCACAGGCCTTAGCGACTG
CGATGAGCCGTGTTCggaagcagcggcggctGTCGAGGCACCGACAGCTG
TAGTTTGAGTTTAAAAGGTGCTGCCGAGAAGCGGAGACCACAAGGCCTGC
TGGCTCACACCACGCTGGTATTTAGGGAAGACATAAGCGTGGAGGCATGA
CGTGAAATTAGTGACGTGGTCACGACTAGGTCGGCATTAAAAAGGTGGGA
GAGATTAAACATATATCGAACGAAGGACACCGAAGAATacgagaaaagga
agatggggacGGGTTGAAATGAAGAATTTTTCTTTCGTGCTGAGCggaaa
aggcaaagaagCCATGAGTCTGAGTTCCAGCGCATTGTCTGCCATTTGTA
AGTGACTACTCCCATAATCCCCTATCAAAGCTTGAAGAAAGCTCTTGATT
TTA

Coding sequence (CDS) from alignment at CM002461.1:591538..593490+

>rna3515 ID=rna3515|Name=rna3515|organism=Nannochloropsis gaditana|type=CDS|length=2082bp|location=Sequence derived from alignment at CM002461.1:591538..593490+ (Nannochloropsis gaditana)
ATGAAACAGAAACCTCGCCTTTGCCGTCTTTGCTCCTCACCAGGCAAGCA
CTTTTCTATCTACCAACGATTCAAGCAAAGCAAAAAGGGTTACAAGATGA
CAACGTCAATCGGCATGATGGACGCAGGTTACTTCGTGGGCCGCAAGGAA
ATTGTTGACTGGATAAATGAAACATTGCAGCTGAATCTCACCAAAGTTGA
GCAGACAGCTTCAGGTGCTGTGGCCTGCCAGCTACTAGACCGCATCTATC
CGGGAAAGGTGCCTTTGAATAAAGTTAATTGGGAAGCCAAGTTGGACTAC
GAGTTCCTTAGTAACTATAAGCTTCTCCAAACTGCATTCACCAAGCTTCA
AATTGACAAGCATTTGCCAGTTGAGAAATTGGTGCGTGCTAAATACCAGG
ATAATTTAGAATTTATGCAATGGTTCAAGCGGTTCTATGAGCTCAACAAT
CCCGCCCTCGACTACGACCCCGTGGTTGCCCGCGCCGGAGGCAAAGGCGC
CGGAGGACCTGCCCGCACCATACCTCCTGCGGCTGCTCCCTTCTGCTCAA
GCACGCGGACGGGAAATATGCCAAGCAATTCTCTTAAAAGCCGACCTTCA
TCTCGAAGCATTGGTAGCAGCACTGGCAGCTCCTCGGGCAATGGTGGCGC
CCGCGACAAGGAAAACAGCGGCGGGGCGATTGCTACATCGTCGAGTCATG
GCGGGAGAAATGTCACGACGGCAGCCGCCGCAACtgtggcggacgaggcg
cTACTGCGAAAAGCGGAGAACTTGGCGCAGGAGAACACGACGTTGCAGGC
GACCATCGAGGGCCTGGAAAAGGAGCGAGACTTTTACTTCGAGAAACTGA
CAGTAGTGGAGGAAATGCTGCAGGAACGGCAAGCAGCAGCGGATGAGAAT
TTCTCGCAGGAGGCGTCTCTTCTGATCGAAGAGATCTTTAAGGTCCTATA
TGCGACGGAAAACGCCACAGGCCTTAGCGACTGCGATGAGCCGTGTTCgg
aagcagcggcggctGTCGAGGCACCGACAGCTGTAGTTTGAATGAAACAG
AAACCTCGCCTTTGCCGTCTTTGCTCCTCACCAGGCAAGCACTTTTCTAT
CTACCAACGATTCAAGCAAAGCAAAAAGGGTTACAAGATGACAACGTCAA
TCGGCATGATGGACGCAGGTTACTTCGTGGGCCGCAAGGAAATTGTTGAC
TGGATAAATGAAACATTGCAGCTGAATCTCACCAAAGTTGAGCAGACAGC
TTCAGGTGCTGTGGCCTGCCAGCTACTAGACCGCATCTATCCGGGAAAGG
TGCCTTTGAATAAAGTTAATTGGGAAGCCAAGTTGGACTACGAGTTCCTT
AGTAACTATAAGCTTCTCCAAACTGCATTCACCAAGCTTCAAATTGACAA
GCATTTGCCAGTTGAGAAATTGGTGCGTGCTAAATACCAGGATAATTTAG
AATTTATGCAATGGTTCAAGCGGTTCTATGAGCTCAACAATCCCGCCCTC
GACTACGACCCCGTGGTTGCCCGCGCCGGAGGCAAAGGCGCCGGAGGACC
TGCCCGCACCATACCTCCTGCGGCTGCTCCCTTCTGCTCAAGCACGCGGA
CGGGAAATATGCCAAGCAATTCTCTTAAAAGCCGACCTTCATCTCGAAGC
ATTGGTAGCAGCACTGGCAGCTCCTCGGGCAATGGTGGCGCCCGCGACAA
GGAAAACAGCGGCGGGGCGATTGCTACATCGTCGAGTCATGGCGGGAGAA
ATGTCACGACGGCAGCCGCCGCAACtgtggcggacgaggcgcTACTGCGA
AAAGCGGAGAACTTGGCGCAGGAGAACACGACGTTGCAGGCGACCATCGA
GGGCCTGGAAAAGGAGCGAGACTTTTACTTCGAGAAACTGACAGTAGTGG
AGGAAATGCTGCAGGAACGGCAAGCAGCAGCGGATGAGAATTTCTCGCAG
GAGGCGTCTCTTCTGATCGAAGAGATCTTTAAGGTCCTATATGCGACGGA
AAACGCCACAGGCCTTAGCGACTGCGATGAGCCGTGTTCggaagcagcgg
cggctGTCGAGGCACCGACAGCTGTAGTTTGA

Synonyms

Publications