rna3513, rna3513 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3513
Unique Name	rna3513
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2790
Alignment location	CM002461.1:587734..589380 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100010g72.6153.mrna
Orig protein id	gnl\|cribi\|Naga_100010g72.6153
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:587734..589380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g72	gene3384	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3513	rna3513-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27183.1	cds3504	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:587734..589380+
coding sequence from alignment at CM002461.1:587734..589380+

mRNA sequence

>rna3513 ID=rna3513|Name=rna3513|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp
CGGCGCAAACATTAGCACGTCGAGAAGGGAAACGCGATCGTCACAGCCTC
TCTATCTGTGCATAGGCCTACACAATCATAGGCCATTCTTGGCCTGATAT
CGGTGCGCAGTCAACTGCCTGGGCGATCACGGGGCGGCCCATTGCTTTCA
ACAAGCTATTAGTCGAGTCCTTTACCATGCGGAGGCGTCGGGACCCGACA
AAACTGCTCGCTCACTTCATTCAAGAAAAGAAGAAAATTGCCTTTCTTGT
GGGTGCAGGCCTTTCCGCCGCCTCGGGCGTGCCAGTTTTTCGTGGTGAAG
ATCCGAACGCTATTTGGGTCAAGCGGGTTACCTCCATGGGGACAAAAGCT
GCTTTTCTGCGTGATCCCGTGACGTGGTACAACGAATTTTGGTTTCCGCT
CTTCAAACACCAATACACGCGAGCTTCTCCGAACGCGGGTCACGAAGCTC
TCGCTCGCTTGAGTAACTTAGACCCAAACCTTTTGGTTGTCACGCAGAAT
ATCGACTCGCTGAATCGACAGACTCGCGAGGCGTGGGCTCACCAAGACAA
ACTTGTCGAGATCCACGGCCGGCTTGGCTTATACCATTGTTCTAGCAATA
ATTACTGCATTTTAGCGAACGAGACCTGGGCACAAGCTATCGATGTGTTC
GGTCCTGAGCTTGCCGAGCAGATCGAGGGCGGTGGTGCCGACAGCTCGGA
TCCTGTAGTTTTGACGCACGTGCCGCGATGTACAGAATGCGGAACTGGTT
ATATGATGCCCTTGGCACTCATGTTTGACGAAATGTATGATAGCCACGCA
TTTTATCAGAGCGATAAGGCCTTGGCGGCATTTGAGGAGGCCGACGCTTT
GGTGTTTGTCGGTACCTCCTTTCAAGTCAATATCAGCAACCTTGCAATCG
AGGCTGGGCCCCGAAAACGGGGCATACCCATTTTCAATTTCAATATTCGA
GATGGGCTAGCGAAAGGAGGAGGAAGACGCTACGATGTTTTTAACATTAT
TGGTCCTGCCGAGGAGACGCTGCAGAAACTTCTCGAGCAAGTCGAGGCCT
GCTTGGAGAAGGATAGCCTCGGGCGAGTCGAAACAGAAAAGCATCGAGAG
GTGCTGGGAGGCACACTCTGCGTTGGGAAAGCAGATTTTCGAACTACGCA
TGAAGTTGGGAACACTGTGTCAAATCACGTGGTCTGCAACAAGTGTCTAT
CGCAGCCCTCAGCAAACGTTCCTGCGACGCCATTTACTTCGAGCGACCAG
CCAGGCCAAGCCAAAAGCGGACCCTCCTACGCATTTGAGACATTTCCTCA
GCCGATTTTTTCTTTCCCATTTTCAGAGGAAGACGTGGAAATTGATTTCA
ATCCTTGCTACGGCCGGTTGTCTCACCCAGATTCTAGGTTGGAAGCAAAT
ATTGATAGCACTTGGGATAGACTCAGTGAAGAAAGAGAGGCACAGGGGTG
CTCTGCCCTTTTCAATGCGGTTAAATTTCGACTGGCTGGCTGCCTTTTAG
TGAAAGAAGGAGAAGCGCGTCCAATGAAGCTTTTGCTGGAGCTGTGGTTG
ACGGATTACAAAACAGCGCGCGGCACCAATCATGCTTCGATTGCGCCTCT
TCTGCAGGCAGACGGACTTGCCGCCCACAAAGACGCACAGGTTTACCTTT
CCCAGAAGTTAGGTGTGAGTGCCATTTTATGTACGCAAGACGGGGACTTG
GTGTTCATTGAACGAAGCACCAAAGGTGTCGCAGATTTCCAGGGCTATAT
CGACACGCCAGGCGGACACCCAGAGCCAGGGAACCTAGGCCTGGAATTCC
CACTGTCTCCTCCTTCAGCATTTACACTTATTCAAACGTTGCATGACCCA
GCAAATGCCGCGCTGTTGAAACAACGCATCCGTCATGAGATCTTCACATC
GGCAGCTCAAGAGGTCGCTGACGAGGTGGGAGTGCCGCTAGACAAGTTGG
AAACTCCCAAGCTTTTGGGGCTGGTGAGACAGCTCGAGTTCGGCGGTGTT
CCAAGCCTGACTTTCTTGGTAAATTGTCAATGTCGGACTTCGGATGTGCA
CAAATATTATGCGGCAGGACCTAAGGAGGGCAATGAGTCTACCAAACTGC
TGTTCATAAATAAACAAGGTGTTACAAATTTTCTGACAATCCCAGACTTG
AAGCTTGCACCTGCGGCACGAGGAAGCCTGGAACTCTTCATAGAACACAC
TTTGTAACTTATCACTTTAAATGCGCACTGATATGGACTCGAGAGTATAG
GCCAAACTTGCTGAAATCTCCCTTATGTGATGTATGTAGAGTTGAAATTG
TCCGTCCCCTTTGTACAGAGTTTTTTAAGAACCATCTTCCTAATCGCAAT
GATGCCAAGAGTAGCAGCATCTTTTTTGAGCCGGTTGAAAATAGAGAGAG
TGTGAAACAGTGCCAAAGATACCACATTTTAAGGCTTCAAATACCTTGCA
AATATCATTTGTAAGTGTGCCGGACAAGAGGACGAAATTGAGGTGAGTTG
ATGAAGGACATTCTCAGATATTTACATTATGCCGTGAGAGCCTACATCGT
AAGGTCGGTCCGTCCCGTGACTGCTGTCTGGTCAGAAAATTCTCACTTTA
ATTTGGTCCGCAAGCGGAGCTCATATGGACTCTGACAAGTCATTCATTGT
TTCCACCGTAAGCTTGCTACTCTTTGGTCGAAATCATAATTTTTAGATTC
CTCTGTAAACGTTCTCGGGGGAAAGGAGGTTGAACAAGTTGCCGAAGGCG
CACGAAAGGGTCAAATGAACTGTCCTGGCCCTTTTCCTTA

protein sequence of rna3513

>rna3513-protein ID=rna3513-protein|Name=rna3513|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MASVTVDTTSRLFSVRWADRTGDNTAQDHKKQEEVGRGEAMDGEEVVSRR
ITLCDVDIKYKSPAAYVFRSHGFFYQVALTSTNTLSRLNPGTYVLNFRQC
QGYKPSPRSLRFHVPALSSTSFPLFALKDEDLYIGVVTMQKLHFQFPRSV
APGVSAIVVAILALLFGLRTLQKRQKPRSRRATSSAPTISTPVVTSESSF
NLSSSSSATSGLALKTSGETSQEDHLAVGSGKVPPVWDLSRHGSSKNVFS
SSHAGDPLRSKSIHELEQSYAQHEDEALSHEARERPSGVEKPRTTAPMYQ
QRQTMRNVEVNGRDSYPPKIYIPSSTLICSPPLPSPSELASTTSSPPSSA
VGSSEPAPRPPAEATCFDGEAGGQGEAEVTNEGNEETLGWVEEYWSFEGP
EPRACASVEGKEGKEDENAKVKLIEIKKRIGTDDR

mRNA from alignment at CM002461.1:587734..589380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3513 ID=rna3513|Name=rna3513|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp|location=Sequence derived from alignment at CM002461.1:587734..589380+ (Nannochloropsis gaditana)
CACAGGGGCCAGACTAGCTGCATTATTCGATGCCAGACGATGGCTTCAGT
CACAGTCGACACAACATCGCGACTTTTCAGCGTACGCTGGGCCGACAGGA
CTGGTGATAATACGGCGCAAGATCACAAAAAACAAGAGGAAgtcgggcga
ggagaggcGATGGACGGAGAGGAAGTAGTGTCACGGCGTATAACCCTGTG
CGACGTCGACATCAAGTACAAGTCTCCCGCTGCATACGTTTTCCGCTCGC
ATGGATTCTTTTATCAAGTCGCTTTGACGTCCACCAACACGCTGTCGCGT
CTTAATCCAGGGACTTATGTCCTCAATTTCAGGCAATGTCAAGGATACAA
ACCGTCGCCACGCTCGCTTCGCTTTCACGTTCCAGCATTGtcgtctacct
ccttcccactgTTCGCTTTGAAAGATGAGGACCTGTATATTGGCGTCGTC
ACGATGCAAAAACTTCATTTTCAATTCCCTCGCTCTGTCGCCCCTGGCGT
AAGCGCAATCGTTGTGGCGATTCTCGCCCTGCTTTTTGGCCTCAGGACCT
TGCAGAAACGCCAGAAGCCGCGCTCTCGCCGAGCAACGTCCTCGGCCCCC
ACGATCTCGACGCCTGTCGTTACTTCAGAGAGCTCCTTCaatctctcttc
ctcctcctctgcaacGTCGGGCCTCGCTTTGAAAACATCCGGGGAAACTT
CGCAGGAAGACCACTTGGCGGTGGGAAGCGGGAAAGTCCCCCCCGTGTGG
GACCTCTCAAGACATGGCTCGTCCAAAAATGTGTTCTCATCTTCGCACGC
CGGGGACCCTTTACGAAGCAAGAGCATCCACGAGCTAGAGCAGAGCTACG
CACAGCATGAAGACGAGGCACTCTCGCATGAAGCCCGTGAACGGCCGTCT
GGTGTGGAAAAGCCCCGTACGACCGCGCCTATGTATCAGCAGCGTCAAAC
CATGCGTAATGTGGAGGTAAATGGTAGAGACAGTTATCCGCCGAAGATAT
ATATACCCTCATCCACGCTGATATGTTCCCCGCCATTACCGTCGCCATCG
GAATTGGCGTCCACTACGtcgtcccctccgtcctcagcCGTCGGCTCATC
CGAGCCTGCCCCAAGGCCACCGGCGGAGGCTACATGCTTCGACGGCGAGg
caggcgggcagggggaagcAGAAGTGACTAACGAGGGGAATGAGGAGACC
CTTGGTTGGGTGGAGGAATACTGGTCTTTTGAGGGGCCAGAGCCCCGTGC
TTGTGCCTCcgtggaaggcaaggagggaaaagaagacgagAATGCAAAGG
TCAAGTTGATCGAAATCAAGAAAAGGATCGGCACGGATGACAGATAGGGT
TGTCACGACTGAGCAACATGGGCTCACAACGTGGTATGGGACTTTCCTGT
GTAATCGGCAAAGCTCTTATGATCCTCGTGTGGAGTAATTTGTCCAGGCT
TCCATTGCCATGTACACATTGTAAGAGGTCTTCCAATTGATAAAAGGCGT
GCGTTCGCTCTAGCTAGATCGCAATCGATAATCAGTAGCCTCACAAAGTT
TTTTTTCAAGATACTTTAAACGTGCACCCGACTACTTTaatttccttctc
tttccattACTAAGGAAGGAAGCACGCTCTTCCCCACGAATGGTAAT

Coding sequence (CDS) from alignment at CM002461.1:587734..589380+

>rna3513 ID=rna3513|Name=rna3513|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002461.1:587734..589380+ (Nannochloropsis gaditana)
ATGGCTTCAGTCACAGTCGACACAACATCGCGACTTTTCAGCGTACGCTG
GGCCGACAGGACTGGTGATAATACGGCGCAAGATCACAAAAAACAAGAGG
AAgtcgggcgaggagaggcGATGGACGGAGAGGAAGTAGTGTCACGGCGT
ATAACCCTGTGCGACGTCGACATCAAGTACAAGTCTCCCGCTGCATACGT
TTTCCGCTCGCATGGATTCTTTTATCAAGTCGCTTTGACGTCCACCAACA
CGCTGTCGCGTCTTAATCCAGGGACTTATGTCCTCAATTTCAGGCAATGT
CAAGGATACAAACCGTCGCCACGCTCGCTTCGCTTTCACGTTCCAGCATT
GtcgtctacctccttcccactgTTCGCTTTGAAAGATGAGGACCTGTATA
TTGGCGTCGTCACGATGCAAAAACTTCATTTTCAATTCCCTCGCTCTGTC
GCCCCTGGCGTAAGCGCAATCGTTGTGGCGATTCTCGCCCTGCTTTTTGG
CCTCAGGACCTTGCAGAAACGCCAGAAGCCGCGCTCTCGCCGAGCAACGT
CCTCGGCCCCCACGATCTCGACGCCTGTCGTTACTTCAGAGAGCTCCTTC
aatctctcttcctcctcctctgcaacGTCGGGCCTCGCTTTGAAAACATC
CGGGGAAACTTCGCAGGAAGACCACTTGGCGGTGGGAAGCGGGAAAGTCC
CCCCCGTGTGGGACCTCTCAAGACATGGCTCGTCCAAAAATGTGTTCTCA
TCTTCGCACGCCGGGGACCCTTTACGAAGCAAGAGCATCCACGAGCTAGA
GCAGAGCTACGCACAGCATGAAGACGAGGCACTCTCGCATGAAGCCCGTG
AACGGCCGTCTGGTGTGGAAAAGCCCCGTACGACCGCGCCTATGTATCAG
CAGCGTCAAACCATGCGTAATGTGGAGGTAAATGGTAGAGACAGTTATCC
GCCGAAGATATATATACCCTCATCCACGCTGATATGTTCCCCGCCATTAC
CGTCGCCATCGGAATTGGCGTCCACTACGtcgtcccctccgtcctcagcC
GTCGGCTCATCCGAGCCTGCCCCAAGGCCACCGGCGGAGGCTACATGCTT
CGACGGCGAGgcaggcgggcagggggaagcAGAAGTGACTAACGAGGGGA
ATGAGGAGACCCTTGGTTGGGTGGAGGAATACTGGTCTTTTGAGGGGCCA
GAGCCCCGTGCTTGTGCCTCcgtggaaggcaaggagggaaaagaagacga
gAATGCAAAGGTCAAGTTGATCGAAATCAAGAAAAGGATCGGCACGGATG
ACAGATAG

Synonyms

Publications