rna3512, rna3512 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3512
Unique Name	rna3512
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	522
Alignment location	CM002461.1:584734..587523 -

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Properties


Property Name	Value
Product	transcriptional sir2 family
Orig transcript id	gnl\|cribi\|Naga_100010g71.6161.mrna
Orig protein id	gnl\|cribi\|Naga_100010g71.6161
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:584734..587523 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g71	gene3383	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27191.1	cds3503	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3512	rna3512-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:584734..587523-
coding sequence from alignment at CM002461.1:584734..587523-

mRNA sequence

>rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=mRNA|length=522bp
ATGCACCGCATGTCTTCGACATCAGCTCGTGCTCATTCATCAACTTTTAG
CGCAGGCTCCTTTTTCGGCCAAGGTAGAGACGCAAAGAAGCGAGTAAACA
AGCTTTTCGCAATTCACGCCGGCATCATGTTTACACTTGGCCTTCTCAGC
GCCTTGTTTCCGGAAGTACTCGTGTATCTTCTCCACCACTCCTCGGATGG
CTTCCACAGCCGTCATGAAGGTGGTACGGCGCGTGTCGCGTTTGTAACAA
TGCGAGTTTTCGGTTGCTTCCTTTTGGCACAAGCGTATCTTTTGTTCGTT
CTCAGAGGTGGAACTGATGGAAATATGCGCCGTGCGGCGGTCCAAAGCTA
TTTTGTTGCTTTTGGTTTGACCACTCTGGCATTGGCACGGGCGCAGCTGA
CAGAGGACATGCCGGTGCGCCTAAGTAATTGGCTTGTCATCTTATCCTTC
TTTGCGCTCACGATGGCTTACGCTTGGTTTTCATTTTTTGAGCGCATCTC
CGTATATGAACTTGGAAGGTAA

protein sequence of rna3512

>rna3512-protein ID=rna3512-protein|Name=rna3512|organism=Nannochloropsis gaditana|type=polypeptide|length=676bp
MRRRRDPTKLLAHFIQEKKKIAFLVGAGLSAASGVPVFRGEDPNAIWVKR
VTSMGTKAAFLRDPVTWYNEFWFPLFKHQYTRASPNAGHEALARLSNLDP
NLLVVTQNIDSLNRQTREAWAHQDKLVEIHGRLGLYHCSSNNYCILANET
WAQAIDVFGPELAEQIEGGGADSSDPVVLTHVPRCTECGTGYMMPLALMF
DEMYDSHAFYQSDKALAAFEEADALVFVGTSFQVNISNLAIEAGPRKRGI
PIFNFNIRDGLAKGGGRRYDVFNIIGPAEETLQKLLEQVEACLEKDSLGR
VETEKHREVLGGTLCVGKADFRTTHEVGNTVSNHVVCNKCLSQPSANVPA
TPFTSSDQPGQAKSGPSYAFETFPQPIFSFPFSEEDVEIDFNPCYGRLSH
PDSRLEANIDSTWDRLSEEREAQGCSALFNAVKFRLAGCLLVKEGEARPM
KLLLELWLTDYKTARGTNHASIAPLLQADGLAAHKDAQVYLSQKLGVSAI
LCTQDGDLVFIERSTKGVADFQGYIDTPGGHPEPGNLGLEFPLSPPSAFT
LIQTLHDPANAALLKQRIRHEIFTSAAQEVADEVGVPLDKLETPKLLGLV
RQLEFGGVPSLTFLVNCQCRTSDVHKYYAAGPKEGNESTKLLFINKQGVT
NFLTIPDLKLAPAARGSLELFIEHTL

mRNA from alignment at CM002461.1:584734..587523-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp|location=Sequence derived from alignment at CM002461.1:584734..587523- (Nannochloropsis gaditana)
CGGCGCAAACATTAGCACGTCGAGAAGGGAAACGCGATCGTCACAGCCTC
TCTATCTGTGCATAGGCCTACACAATCATAGGCCATTCTTGGCCTGATAT
CGGTGCGCAGTCAACTGCCTGGGCGATCACGGGGCGGCCCATTGCTTTCA
ACAAGCTATTAGTCGAGTCCTTTACCATGCGGAGGCGTCGGGACCCGACA
AAACTGCTCGCTCACTTCATTCAAGAAAAGAAGAAAATTGCCTTTCTTGT
GGGTGCAGGCCTTTCCGCCGCCTCGGGCGTGCCAGTTTTTCGTGGTGAAG
ATCCGAACGCTATTTGGGTCAAGCGGGTTACCTCCATGGGGACAAAAGCT
GCTTTTCTGCGTGATCCCGTGACGTGGTACAACGAATTTTGGTTTCCGCT
CTTCAAACACCAATACACGCGAGCTTCTCCGAACGCGGGTCACGAAGCTC
TCGCTCGCTTGAGTAACTTAGACCCAAACCTTTTGGTTGTCACGCAGAAT
ATCGACTCGCTGAATCGACAGACTCGCGAGGCGTGGGCTCACCAAGACAA
ACTTGTCGAGATCCACGGCCGGCTTGGCTTATACCATTGTTCTAGCAATA
ATTACTGCATTTTAGCGAACGAGACCTGGGCACAAGCTATCGATGTGTTC
GGTCCTGAGCTTGCCGAGCAGATCGAGGGCGGTGGTGCCGACAGCTCGGA
TCCTGTAGTTTTGACGCACGTGCCGCGATGTACAGAATGCGGAACTGGTT
ATATGATGCCCTTGGCACTCATGTTTGACGAAATGTATGATAGCCACGCA
TTTTATCAGAGCGATAAGGCCTTGGCGGCATTTGAGGAGGCCGACGCTTT
GGTGTTTGTCGGTACCTCCTTTCAAGTCAATATCAGCAACCTTGCAATCG
AGGCTGGGCCCCGAAAACGGGGCATACCCATTTTCAATTTCAATATTCGA
GATGGGCTAGCGAAAGGAGGAGGAAGACGCTACGATGTTTTTAACATTAT
TGGTCCTGCCGAGGAGACGCTGCAGAAACTTCTCGAGCAAGTCGAGGCCT
GCTTGGAGAAGGATAGCCTCGGGCGAGTCGAAACAGAAAAGCATCGAGAG
GTGCTGGGAGGCACACTCTGCGTTGGGAAAGCAGATTTTCGAACTACGCA
TGAAGTTGGGAACACTGTGTCAAATCACGTGGTCTGCAACAAGTGTCTAT
CGCAGCCCTCAGCAAACGTTCCTGCGACGCCATTTACTTCGAGCGACCAG
CCAGGCCAAGCCAAAAGCGGACCCTCCTACGCATTTGAGACATTTCCTCA
GCCGATTTTTTCTTTCCCATTTTCAGAGGAAGACGTGGAAATTGATTTCA
ATCCTTGCTACGGCCGGTTGTCTCACCCAGATTCTAGGTTGGAAGCAAAT
ATTGATAGCACTTGGGATAGACTCAGTGAAGAAAGAGAGGCACAGGGGTG
CTCTGCCCTTTTCAATGCGGTTAAATTTCGACTGGCTGGCTGCCTTTTAG
TGAAAGAAGGAGAAGCGCGTCCAATGAAGCTTTTGCTGGAGCTGTGGTTG
ACGGATTACAAAACAGCGCGCGGCACCAATCATGCTTCGATTGCGCCTCT
TCTGCAGGCAGACGGACTTGCCGCCCACAAAGACGCACAGGTTTACCTTT
CCCAGAAGTTAGGTGTGAGTGCCATTTTATGTACGCAAGACGGGGACTTG
GTGTTCATTGAACGAAGCACCAAAGGTGTCGCAGATTTCCAGGGCTATAT
CGACACGCCAGGCGGACACCCAGAGCCAGGGAACCTAGGCCTGGAATTCC
CACTGTCTCCTCCTTCAGCATTTACACTTATTCAAACGTTGCATGACCCA
GCAAATGCCGCGCTGTTGAAACAACGCATCCGTCATGAGATCTTCACATC
GGCAGCTCAAGAGGTCGCTGACGAGGTGGGAGTGCCGCTAGACAAGTTGG
AAACTCCCAAGCTTTTGGGGCTGGTGAGACAGCTCGAGTTCGGCGGTGTT
CCAAGCCTGACTTTCTTGGTAAATTGTCAATGTCGGACTTCGGATGTGCA
CAAATATTATGCGGCAGGACCTAAGGAGGGCAATGAGTCTACCAAACTGC
TGTTCATAAATAAACAAGGTGTTACAAATTTTCTGACAATCCCAGACTTG
AAGCTTGCACCTGCGGCACGAGGAAGCCTGGAACTCTTCATAGAACACAC
TTTGTAACTTATCACTTTAAATGCGCACTGATATGGACTCGAGAGTATAG
GCCAAACTTGCTGAAATCTCCCTTATGTGATGTATGTAGAGTTGAAATTG
TCCGTCCCCTTTGTACAGAGTTTTTTAAGAACCATCTTCCTAATCGCAAT
GATGCCAAGAGTAGCAGCATCTTTTTTGAGCCGGTTGAAAATAGAGAGAG
TGTGAAACAGTGCCAAAGATACCACATTTTAAGGCTTCAAATACCTTGCA
AATATCATTTGTAAGTGTGCCGGACAAGAGGACGAAATTGAGGTGAGTTG
ATGAAGGACATTCTCAGATATTTACATTATGCCGTGAGAGCCTACATCGT
AAGGTCGGTCCGTCCCGTGACTGCTGTCTGGTCAGAAAATTCTCACTTTA
ATTTGGTCCGCAAGCGGAGCTCATATGGACTCTGACAAGTCATTCATTGT
TTCCACCGTAAGCTTGCTACTCTTTGGTCGAAATCATAATTTTTAGATTC
CTCTGTAAACGTTCTCGGGGGAAAGGAGGTTGAACAAGTTGCCGAAGGCG
CACGAAAGGGTCAAATGAACTGTCCTGGCCCTTTTCCTTA

Coding sequence (CDS) from alignment at CM002461.1:584734..587523-

>rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=CDS|length=2031bp|location=Sequence derived from alignment at CM002461.1:584734..587523- (Nannochloropsis gaditana)
ATGCGGAGGCGTCGGGACCCGACAAAACTGCTCGCTCACTTCATTCAAGA
AAAGAAGAAAATTGCCTTTCTTGTGGGTGCAGGCCTTTCCGCCGCCTCGG
GCGTGCCAGTTTTTCGTGGTGAAGATCCGAACGCTATTTGGGTCAAGCGG
GTTACCTCCATGGGGACAAAAGCTGCTTTTCTGCGTGATCCCGTGACGTG
GTACAACGAATTTTGGTTTCCGCTCTTCAAACACCAATACACGCGAGCTT
CTCCGAACGCGGGTCACGAAGCTCTCGCTCGCTTGAGTAACTTAGACCCA
AACCTTTTGGTTGTCACGCAGAATATCGACTCGCTGAATCGACAGACTCG
CGAGGCGTGGGCTCACCAAGACAAACTTGTCGAGATCCACGGCCGGCTTG
GCTTATACCATTGTTCTAGCAATAATTACTGCATTTTAGCGAACGAGACC
TGGGCACAAGCTATCGATGTGTTCGGTCCTGAGCTTGCCGAGCAGATCGA
GGGCGGTGGTGCCGACAGCTCGGATCCTGTAGTTTTGACGCACGTGCCGC
GATGTACAGAATGCGGAACTGGTTATATGATGCCCTTGGCACTCATGTTT
GACGAAATGTATGATAGCCACGCATTTTATCAGAGCGATAAGGCCTTGGC
GGCATTTGAGGAGGCCGACGCTTTGGTGTTTGTCGGTACCTCCTTTCAAG
TCAATATCAGCAACCTTGCAATCGAGGCTGGGCCCCGAAAACGGGGCATA
CCCATTTTCAATTTCAATATTCGAGATGGGCTAGCGAAAGGAGGAGGAAG
ACGCTACGATGTTTTTAACATTATTGGTCCTGCCGAGGAGACGCTGCAGA
AACTTCTCGAGCAAGTCGAGGCCTGCTTGGAGAAGGATAGCCTCGGGCGA
GTCGAAACAGAAAAGCATCGAGAGGTGCTGGGAGGCACACTCTGCGTTGG
GAAAGCAGATTTTCGAACTACGCATGAAGTTGGGAACACTGTGTCAAATC
ACGTGGTCTGCAACAAGTGTCTATCGCAGCCCTCAGCAAACGTTCCTGCG
ACGCCATTTACTTCGAGCGACCAGCCAGGCCAAGCCAAAAGCGGACCCTC
CTACGCATTTGAGACATTTCCTCAGCCGATTTTTTCTTTCCCATTTTCAG
AGGAAGACGTGGAAATTGATTTCAATCCTTGCTACGGCCGGTTGTCTCAC
CCAGATTCTAGGTTGGAAGCAAATATTGATAGCACTTGGGATAGACTCAG
TGAAGAAAGAGAGGCACAGGGGTGCTCTGCCCTTTTCAATGCGGTTAAAT
TTCGACTGGCTGGCTGCCTTTTAGTGAAAGAAGGAGAAGCGCGTCCAATG
AAGCTTTTGCTGGAGCTGTGGTTGACGGATTACAAAACAGCGCGCGGCAC
CAATCATGCTTCGATTGCGCCTCTTCTGCAGGCAGACGGACTTGCCGCCC
ACAAAGACGCACAGGTTTACCTTTCCCAGAAGTTAGGTGTGAGTGCCATT
TTATGTACGCAAGACGGGGACTTGGTGTTCATTGAACGAAGCACCAAAGG
TGTCGCAGATTTCCAGGGCTATATCGACACGCCAGGCGGACACCCAGAGC
CAGGGAACCTAGGCCTGGAATTCCCACTGTCTCCTCCTTCAGCATTTACA
CTTATTCAAACGTTGCATGACCCAGCAAATGCCGCGCTGTTGAAACAACG
CATCCGTCATGAGATCTTCACATCGGCAGCTCAAGAGGTCGCTGACGAGG
TGGGAGTGCCGCTAGACAAGTTGGAAACTCCCAAGCTTTTGGGGCTGGTG
AGACAGCTCGAGTTCGGCGGTGTTCCAAGCCTGACTTTCTTGGTAAATTG
TCAATGTCGGACTTCGGATGTGCACAAATATTATGCGGCAGGACCTAAGG
AGGGCAATGAGTCTACCAAACTGCTGTTCATAAATAAACAAGGTGTTACA
AATTTTCTGACAATCCCAGACTTGAAGCTTGCACCTGCGGCACGAGGAAG
CCTGGAACTCTTCATAGAACACACTTTGTAA

Synonyms

Publications