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Properties
Property Name | Value |
Product | transcriptional sir2 family |
Orig transcript id | gnl|cribi|Naga_100010g71.6161.mrna |
Orig protein id | gnl|cribi|Naga_100010g71.6161 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002461.1 | supercontig | CM002461.1:584734..587523 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=mRNA|length=522bp ATGCACCGCATGTCTTCGACATCAGCTCGTGCTCATTCATCAACTTTTAG CGCAGGCTCCTTTTTCGGCCAAGGTAGAGACGCAAAGAAGCGAGTAAACA AGCTTTTCGCAATTCACGCCGGCATCATGTTTACACTTGGCCTTCTCAGC GCCTTGTTTCCGGAAGTACTCGTGTATCTTCTCCACCACTCCTCGGATGG CTTCCACAGCCGTCATGAAGGTGGTACGGCGCGTGTCGCGTTTGTAACAA TGCGAGTTTTCGGTTGCTTCCTTTTGGCACAAGCGTATCTTTTGTTCGTT CTCAGAGGTGGAACTGATGGAAATATGCGCCGTGCGGCGGTCCAAAGCTA TTTTGTTGCTTTTGGTTTGACCACTCTGGCATTGGCACGGGCGCAGCTGA CAGAGGACATGCCGGTGCGCCTAAGTAATTGGCTTGTCATCTTATCCTTC TTTGCGCTCACGATGGCTTACGCTTGGTTTTCATTTTTTGAGCGCATCTC CGTATATGAACTTGGAAGGTAA back to topprotein sequence of rna3512 >rna3512-protein ID=rna3512-protein|Name=rna3512|organism=Nannochloropsis gaditana|type=polypeptide|length=676bp MRRRRDPTKLLAHFIQEKKKIAFLVGAGLSAASGVPVFRGEDPNAIWVKR VTSMGTKAAFLRDPVTWYNEFWFPLFKHQYTRASPNAGHEALARLSNLDP NLLVVTQNIDSLNRQTREAWAHQDKLVEIHGRLGLYHCSSNNYCILANET WAQAIDVFGPELAEQIEGGGADSSDPVVLTHVPRCTECGTGYMMPLALMF DEMYDSHAFYQSDKALAAFEEADALVFVGTSFQVNISNLAIEAGPRKRGI PIFNFNIRDGLAKGGGRRYDVFNIIGPAEETLQKLLEQVEACLEKDSLGR VETEKHREVLGGTLCVGKADFRTTHEVGNTVSNHVVCNKCLSQPSANVPA TPFTSSDQPGQAKSGPSYAFETFPQPIFSFPFSEEDVEIDFNPCYGRLSH PDSRLEANIDSTWDRLSEEREAQGCSALFNAVKFRLAGCLLVKEGEARPM KLLLELWLTDYKTARGTNHASIAPLLQADGLAAHKDAQVYLSQKLGVSAI LCTQDGDLVFIERSTKGVADFQGYIDTPGGHPEPGNLGLEFPLSPPSAFT LIQTLHDPANAALLKQRIRHEIFTSAAQEVADEVGVPLDKLETPKLLGLV RQLEFGGVPSLTFLVNCQCRTSDVHKYYAAGPKEGNESTKLLFINKQGVT NFLTIPDLKLAPAARGSLELFIEHTL back to topmRNA from alignment at CM002461.1:584734..587523- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp|location=Sequence derived from alignment at CM002461.1:584734..587523- (Nannochloropsis gaditana) CGGCGCAAACATTAGCACGTCGAGAAGGGAAACGCGATCGTCACAGCCTC
TCTATCTGTGCATAGGCCTACACAATCATAGGCCATTCTTGGCCTGATAT
CGGTGCGCAGTCAACTGCCTGGGCGATCACGGGGCGGCCCATTGCTTTCA
ACAAGCTATTAGTCGAGTCCTTTACCATGCGGAGGCGTCGGGACCCGACA
AAACTGCTCGCTCACTTCATTCAAGAAAAGAAGAAAATTGCCTTTCTTGT
GGGTGCAGGCCTTTCCGCCGCCTCGGGCGTGCCAGTTTTTCGTGGTGAAG
ATCCGAACGCTATTTGGGTCAAGCGGGTTACCTCCATGGGGACAAAAGCT
GCTTTTCTGCGTGATCCCGTGACGTGGTACAACGAATTTTGGTTTCCGCT
CTTCAAACACCAATACACGCGAGCTTCTCCGAACGCGGGTCACGAAGCTC
TCGCTCGCTTGAGTAACTTAGACCCAAACCTTTTGGTTGTCACGCAGAAT
ATCGACTCGCTGAATCGACAGACTCGCGAGGCGTGGGCTCACCAAGACAA
ACTTGTCGAGATCCACGGCCGGCTTGGCTTATACCATTGTTCTAGCAATA
ATTACTGCATTTTAGCGAACGAGACCTGGGCACAAGCTATCGATGTGTTC
GGTCCTGAGCTTGCCGAGCAGATCGAGGGCGGTGGTGCCGACAGCTCGGA
TCCTGTAGTTTTGACGCACGTGCCGCGATGTACAGAATGCGGAACTGGTT
ATATGATGCCCTTGGCACTCATGTTTGACGAAATGTATGATAGCCACGCA
TTTTATCAGAGCGATAAGGCCTTGGCGGCATTTGAGGAGGCCGACGCTTT
GGTGTTTGTCGGTACCTCCTTTCAAGTCAATATCAGCAACCTTGCAATCG
AGGCTGGGCCCCGAAAACGGGGCATACCCATTTTCAATTTCAATATTCGA
GATGGGCTAGCGAAAGGAGGAGGAAGACGCTACGATGTTTTTAACATTAT
TGGTCCTGCCGAGGAGACGCTGCAGAAACTTCTCGAGCAAGTCGAGGCCT
GCTTGGAGAAGGATAGCCTCGGGCGAGTCGAAACAGAAAAGCATCGAGAG
GTGCTGGGAGGCACACTCTGCGTTGGGAAAGCAGATTTTCGAACTACGCA
TGAAGTTGGGAACACTGTGTCAAATCACGTGGTCTGCAACAAGTGTCTAT
CGCAGCCCTCAGCAAACGTTCCTGCGACGCCATTTACTTCGAGCGACCAG
CCAGGCCAAGCCAAAAGCGGACCCTCCTACGCATTTGAGACATTTCCTCA
GCCGATTTTTTCTTTCCCATTTTCAGAGGAAGACGTGGAAATTGATTTCA
ATCCTTGCTACGGCCGGTTGTCTCACCCAGATTCTAGGTTGGAAGCAAAT
ATTGATAGCACTTGGGATAGACTCAGTGAAGAAAGAGAGGCACAGGGGTG
CTCTGCCCTTTTCAATGCGGTTAAATTTCGACTGGCTGGCTGCCTTTTAG
TGAAAGAAGGAGAAGCGCGTCCAATGAAGCTTTTGCTGGAGCTGTGGTTG
ACGGATTACAAAACAGCGCGCGGCACCAATCATGCTTCGATTGCGCCTCT
TCTGCAGGCAGACGGACTTGCCGCCCACAAAGACGCACAGGTTTACCTTT
CCCAGAAGTTAGGTGTGAGTGCCATTTTATGTACGCAAGACGGGGACTTG
GTGTTCATTGAACGAAGCACCAAAGGTGTCGCAGATTTCCAGGGCTATAT
CGACACGCCAGGCGGACACCCAGAGCCAGGGAACCTAGGCCTGGAATTCC
CACTGTCTCCTCCTTCAGCATTTACACTTATTCAAACGTTGCATGACCCA
GCAAATGCCGCGCTGTTGAAACAACGCATCCGTCATGAGATCTTCACATC
GGCAGCTCAAGAGGTCGCTGACGAGGTGGGAGTGCCGCTAGACAAGTTGG
AAACTCCCAAGCTTTTGGGGCTGGTGAGACAGCTCGAGTTCGGCGGTGTT
CCAAGCCTGACTTTCTTGGTAAATTGTCAATGTCGGACTTCGGATGTGCA
CAAATATTATGCGGCAGGACCTAAGGAGGGCAATGAGTCTACCAAACTGC
TGTTCATAAATAAACAAGGTGTTACAAATTTTCTGACAATCCCAGACTTG
AAGCTTGCACCTGCGGCACGAGGAAGCCTGGAACTCTTCATAGAACACAC
TTTGTAACTTATCACTTTAAATGCGCACTGATATGGACTCGAGAGTATAG
GCCAAACTTGCTGAAATCTCCCTTATGTGATGTATGTAGAGTTGAAATTG
TCCGTCCCCTTTGTACAGAGTTTTTTAAGAACCATCTTCCTAATCGCAAT
GATGCCAAGAGTAGCAGCATCTTTTTTGAGCCGGTTGAAAATAGAGAGAG
TGTGAAACAGTGCCAAAGATACCACATTTTAAGGCTTCAAATACCTTGCA
AATATCATTTGTAAGTGTGCCGGACAAGAGGACGAAATTGAGGTGAGTTG
ATGAAGGACATTCTCAGATATTTACATTATGCCGTGAGAGCCTACATCGT
AAGGTCGGTCCGTCCCGTGACTGCTGTCTGGTCAGAAAATTCTCACTTTA
ATTTGGTCCGCAAGCGGAGCTCATATGGACTCTGACAAGTCATTCATTGT
TTCCACCGTAAGCTTGCTACTCTTTGGTCGAAATCATAATTTTTAGATTC
CTCTGTAAACGTTCTCGGGGGAAAGGAGGTTGAACAAGTTGCCGAAGGCG
CACGAAAGGGTCAAATGAACTGTCCTGGCCCTTTTCCTTA back to topCoding sequence (CDS) from alignment at CM002461.1:584734..587523- >rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=CDS|length=2031bp|location=Sequence derived from alignment at CM002461.1:584734..587523- (Nannochloropsis gaditana) ATGCGGAGGCGTCGGGACCCGACAAAACTGCTCGCTCACTTCATTCAAGA AAAGAAGAAAATTGCCTTTCTTGTGGGTGCAGGCCTTTCCGCCGCCTCGG GCGTGCCAGTTTTTCGTGGTGAAGATCCGAACGCTATTTGGGTCAAGCGG GTTACCTCCATGGGGACAAAAGCTGCTTTTCTGCGTGATCCCGTGACGTG GTACAACGAATTTTGGTTTCCGCTCTTCAAACACCAATACACGCGAGCTT CTCCGAACGCGGGTCACGAAGCTCTCGCTCGCTTGAGTAACTTAGACCCA AACCTTTTGGTTGTCACGCAGAATATCGACTCGCTGAATCGACAGACTCG CGAGGCGTGGGCTCACCAAGACAAACTTGTCGAGATCCACGGCCGGCTTG GCTTATACCATTGTTCTAGCAATAATTACTGCATTTTAGCGAACGAGACC TGGGCACAAGCTATCGATGTGTTCGGTCCTGAGCTTGCCGAGCAGATCGA GGGCGGTGGTGCCGACAGCTCGGATCCTGTAGTTTTGACGCACGTGCCGC GATGTACAGAATGCGGAACTGGTTATATGATGCCCTTGGCACTCATGTTT GACGAAATGTATGATAGCCACGCATTTTATCAGAGCGATAAGGCCTTGGC GGCATTTGAGGAGGCCGACGCTTTGGTGTTTGTCGGTACCTCCTTTCAAG TCAATATCAGCAACCTTGCAATCGAGGCTGGGCCCCGAAAACGGGGCATA CCCATTTTCAATTTCAATATTCGAGATGGGCTAGCGAAAGGAGGAGGAAG ACGCTACGATGTTTTTAACATTATTGGTCCTGCCGAGGAGACGCTGCAGA AACTTCTCGAGCAAGTCGAGGCCTGCTTGGAGAAGGATAGCCTCGGGCGA GTCGAAACAGAAAAGCATCGAGAGGTGCTGGGAGGCACACTCTGCGTTGG GAAAGCAGATTTTCGAACTACGCATGAAGTTGGGAACACTGTGTCAAATC ACGTGGTCTGCAACAAGTGTCTATCGCAGCCCTCAGCAAACGTTCCTGCG ACGCCATTTACTTCGAGCGACCAGCCAGGCCAAGCCAAAAGCGGACCCTC CTACGCATTTGAGACATTTCCTCAGCCGATTTTTTCTTTCCCATTTTCAG AGGAAGACGTGGAAATTGATTTCAATCCTTGCTACGGCCGGTTGTCTCAC CCAGATTCTAGGTTGGAAGCAAATATTGATAGCACTTGGGATAGACTCAG TGAAGAAAGAGAGGCACAGGGGTGCTCTGCCCTTTTCAATGCGGTTAAAT TTCGACTGGCTGGCTGCCTTTTAGTGAAAGAAGGAGAAGCGCGTCCAATG AAGCTTTTGCTGGAGCTGTGGTTGACGGATTACAAAACAGCGCGCGGCAC CAATCATGCTTCGATTGCGCCTCTTCTGCAGGCAGACGGACTTGCCGCCC ACAAAGACGCACAGGTTTACCTTTCCCAGAAGTTAGGTGTGAGTGCCATT TTATGTACGCAAGACGGGGACTTGGTGTTCATTGAACGAAGCACCAAAGG TGTCGCAGATTTCCAGGGCTATATCGACACGCCAGGCGGACACCCAGAGC CAGGGAACCTAGGCCTGGAATTCCCACTGTCTCCTCCTTCAGCATTTACA CTTATTCAAACGTTGCATGACCCAGCAAATGCCGCGCTGTTGAAACAACG CATCCGTCATGAGATCTTCACATCGGCAGCTCAAGAGGTCGCTGACGAGG TGGGAGTGCCGCTAGACAAGTTGGAAACTCCCAAGCTTTTGGGGCTGGTG AGACAGCTCGAGTTCGGCGGTGTTCCAAGCCTGACTTTCTTGGTAAATTG TCAATGTCGGACTTCGGATGTGCACAAATATTATGCGGCAGGACCTAAGG AGGGCAATGAGTCTACCAAACTGCTGTTCATAAATAAACAAGGTGTTACA AATTTTCTGACAATCCCAGACTTGAAGCTTGCACCTGCGGCACGAGGAAG CCTGGAACTCTTCATAGAACACACTTTGTAA back to top
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