rna3512, rna3512 (mRNA) Nannochloropsis gaditana

Overview
Namerna3512
Unique Namerna3512
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length522
Alignment locationCM002461.1:584734..587523 -

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Properties
Property NameValue
Producttranscriptional sir2 family
Orig transcript idgnl|cribi|Naga_100010g71.6161.mrna
Orig protein idgnl|cribi|Naga_100010g71.6161
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:584734..587523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g71gene3383Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27191.1cds3503Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3512rna3512-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=mRNA|length=522bp
ATGCACCGCATGTCTTCGACATCAGCTCGTGCTCATTCATCAACTTTTAG
CGCAGGCTCCTTTTTCGGCCAAGGTAGAGACGCAAAGAAGCGAGTAAACA
AGCTTTTCGCAATTCACGCCGGCATCATGTTTACACTTGGCCTTCTCAGC
GCCTTGTTTCCGGAAGTACTCGTGTATCTTCTCCACCACTCCTCGGATGG
CTTCCACAGCCGTCATGAAGGTGGTACGGCGCGTGTCGCGTTTGTAACAA
TGCGAGTTTTCGGTTGCTTCCTTTTGGCACAAGCGTATCTTTTGTTCGTT
CTCAGAGGTGGAACTGATGGAAATATGCGCCGTGCGGCGGTCCAAAGCTA
TTTTGTTGCTTTTGGTTTGACCACTCTGGCATTGGCACGGGCGCAGCTGA
CAGAGGACATGCCGGTGCGCCTAAGTAATTGGCTTGTCATCTTATCCTTC
TTTGCGCTCACGATGGCTTACGCTTGGTTTTCATTTTTTGAGCGCATCTC
CGTATATGAACTTGGAAGGTAA
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protein sequence of rna3512

>rna3512-protein ID=rna3512-protein|Name=rna3512|organism=Nannochloropsis gaditana|type=polypeptide|length=676bp
MRRRRDPTKLLAHFIQEKKKIAFLVGAGLSAASGVPVFRGEDPNAIWVKR
VTSMGTKAAFLRDPVTWYNEFWFPLFKHQYTRASPNAGHEALARLSNLDP
NLLVVTQNIDSLNRQTREAWAHQDKLVEIHGRLGLYHCSSNNYCILANET
WAQAIDVFGPELAEQIEGGGADSSDPVVLTHVPRCTECGTGYMMPLALMF
DEMYDSHAFYQSDKALAAFEEADALVFVGTSFQVNISNLAIEAGPRKRGI
PIFNFNIRDGLAKGGGRRYDVFNIIGPAEETLQKLLEQVEACLEKDSLGR
VETEKHREVLGGTLCVGKADFRTTHEVGNTVSNHVVCNKCLSQPSANVPA
TPFTSSDQPGQAKSGPSYAFETFPQPIFSFPFSEEDVEIDFNPCYGRLSH
PDSRLEANIDSTWDRLSEEREAQGCSALFNAVKFRLAGCLLVKEGEARPM
KLLLELWLTDYKTARGTNHASIAPLLQADGLAAHKDAQVYLSQKLGVSAI
LCTQDGDLVFIERSTKGVADFQGYIDTPGGHPEPGNLGLEFPLSPPSAFT
LIQTLHDPANAALLKQRIRHEIFTSAAQEVADEVGVPLDKLETPKLLGLV
RQLEFGGVPSLTFLVNCQCRTSDVHKYYAAGPKEGNESTKLLFINKQGVT
NFLTIPDLKLAPAARGSLELFIEHTL
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mRNA from alignment at CM002461.1:584734..587523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp|location=Sequence derived from alignment at CM002461.1:584734..587523- (Nannochloropsis gaditana)
CGGCGCAAACATTAGCACGTCGAGAAGGGAAACGCGATCGTCACAGCCTC TCTATCTGTGCATAGGCCTACACAATCATAGGCCATTCTTGGCCTGATAT CGGTGCGCAGTCAACTGCCTGGGCGATCACGGGGCGGCCCATTGCTTTCA ACAAGCTATTAGTCGAGTCCTTTACCATGCGGAGGCGTCGGGACCCGACA AAACTGCTCGCTCACTTCATTCAAGAAAAGAAGAAAATTGCCTTTCTTGT GGGTGCAGGCCTTTCCGCCGCCTCGGGCGTGCCAGTTTTTCGTGGTGAAG ATCCGAACGCTATTTGGGTCAAGCGGGTTACCTCCATGGGGACAAAAGCT GCTTTTCTGCGTGATCCCGTGACGTGGTACAACGAATTTTGGTTTCCGCT CTTCAAACACCAATACACGCGAGCTTCTCCGAACGCGGGTCACGAAGCTC TCGCTCGCTTGAGTAACTTAGACCCAAACCTTTTGGTTGTCACGCAGAAT ATCGACTCGCTGAATCGACAGACTCGCGAGGCGTGGGCTCACCAAGACAA ACTTGTCGAGATCCACGGCCGGCTTGGCTTATACCATTGTTCTAGCAATA ATTACTGCATTTTAGCGAACGAGACCTGGGCACAAGCTATCGATGTGTTC GGTCCTGAGCTTGCCGAGCAGATCGAGGGCGGTGGTGCCGACAGCTCGGA TCCTGTAGTTTTGACGCACGTGCCGCGATGTACAGAATGCGGAACTGGTT ATATGATGCCCTTGGCACTCATGTTTGACGAAATGTATGATAGCCACGCA TTTTATCAGAGCGATAAGGCCTTGGCGGCATTTGAGGAGGCCGACGCTTT GGTGTTTGTCGGTACCTCCTTTCAAGTCAATATCAGCAACCTTGCAATCG AGGCTGGGCCCCGAAAACGGGGCATACCCATTTTCAATTTCAATATTCGA GATGGGCTAGCGAAAGGAGGAGGAAGACGCTACGATGTTTTTAACATTAT TGGTCCTGCCGAGGAGACGCTGCAGAAACTTCTCGAGCAAGTCGAGGCCT GCTTGGAGAAGGATAGCCTCGGGCGAGTCGAAACAGAAAAGCATCGAGAG GTGCTGGGAGGCACACTCTGCGTTGGGAAAGCAGATTTTCGAACTACGCA TGAAGTTGGGAACACTGTGTCAAATCACGTGGTCTGCAACAAGTGTCTAT CGCAGCCCTCAGCAAACGTTCCTGCGACGCCATTTACTTCGAGCGACCAG CCAGGCCAAGCCAAAAGCGGACCCTCCTACGCATTTGAGACATTTCCTCA GCCGATTTTTTCTTTCCCATTTTCAGAGGAAGACGTGGAAATTGATTTCA ATCCTTGCTACGGCCGGTTGTCTCACCCAGATTCTAGGTTGGAAGCAAAT ATTGATAGCACTTGGGATAGACTCAGTGAAGAAAGAGAGGCACAGGGGTG CTCTGCCCTTTTCAATGCGGTTAAATTTCGACTGGCTGGCTGCCTTTTAG TGAAAGAAGGAGAAGCGCGTCCAATGAAGCTTTTGCTGGAGCTGTGGTTG ACGGATTACAAAACAGCGCGCGGCACCAATCATGCTTCGATTGCGCCTCT TCTGCAGGCAGACGGACTTGCCGCCCACAAAGACGCACAGGTTTACCTTT CCCAGAAGTTAGGTGTGAGTGCCATTTTATGTACGCAAGACGGGGACTTG GTGTTCATTGAACGAAGCACCAAAGGTGTCGCAGATTTCCAGGGCTATAT CGACACGCCAGGCGGACACCCAGAGCCAGGGAACCTAGGCCTGGAATTCC CACTGTCTCCTCCTTCAGCATTTACACTTATTCAAACGTTGCATGACCCA GCAAATGCCGCGCTGTTGAAACAACGCATCCGTCATGAGATCTTCACATC GGCAGCTCAAGAGGTCGCTGACGAGGTGGGAGTGCCGCTAGACAAGTTGG AAACTCCCAAGCTTTTGGGGCTGGTGAGACAGCTCGAGTTCGGCGGTGTT CCAAGCCTGACTTTCTTGGTAAATTGTCAATGTCGGACTTCGGATGTGCA CAAATATTATGCGGCAGGACCTAAGGAGGGCAATGAGTCTACCAAACTGC TGTTCATAAATAAACAAGGTGTTACAAATTTTCTGACAATCCCAGACTTG AAGCTTGCACCTGCGGCACGAGGAAGCCTGGAACTCTTCATAGAACACAC TTTGTAACTTATCACTTTAAATGCGCACTGATATGGACTCGAGAGTATAG GCCAAACTTGCTGAAATCTCCCTTATGTGATGTATGTAGAGTTGAAATTG TCCGTCCCCTTTGTACAGAGTTTTTTAAGAACCATCTTCCTAATCGCAAT GATGCCAAGAGTAGCAGCATCTTTTTTGAGCCGGTTGAAAATAGAGAGAG TGTGAAACAGTGCCAAAGATACCACATTTTAAGGCTTCAAATACCTTGCA AATATCATTTGTAAGTGTGCCGGACAAGAGGACGAAATTGAGGTGAGTTG ATGAAGGACATTCTCAGATATTTACATTATGCCGTGAGAGCCTACATCGT AAGGTCGGTCCGTCCCGTGACTGCTGTCTGGTCAGAAAATTCTCACTTTA ATTTGGTCCGCAAGCGGAGCTCATATGGACTCTGACAAGTCATTCATTGT TTCCACCGTAAGCTTGCTACTCTTTGGTCGAAATCATAATTTTTAGATTC CTCTGTAAACGTTCTCGGGGGAAAGGAGGTTGAACAAGTTGCCGAAGGCG CACGAAAGGGTCAAATGAACTGTCCTGGCCCTTTTCCTTA
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Coding sequence (CDS) from alignment at CM002461.1:584734..587523-

>rna3512 ID=rna3512|Name=rna3512|organism=Nannochloropsis gaditana|type=CDS|length=2031bp|location=Sequence derived from alignment at CM002461.1:584734..587523- (Nannochloropsis gaditana)
ATGCGGAGGCGTCGGGACCCGACAAAACTGCTCGCTCACTTCATTCAAGA
AAAGAAGAAAATTGCCTTTCTTGTGGGTGCAGGCCTTTCCGCCGCCTCGG
GCGTGCCAGTTTTTCGTGGTGAAGATCCGAACGCTATTTGGGTCAAGCGG
GTTACCTCCATGGGGACAAAAGCTGCTTTTCTGCGTGATCCCGTGACGTG
GTACAACGAATTTTGGTTTCCGCTCTTCAAACACCAATACACGCGAGCTT
CTCCGAACGCGGGTCACGAAGCTCTCGCTCGCTTGAGTAACTTAGACCCA
AACCTTTTGGTTGTCACGCAGAATATCGACTCGCTGAATCGACAGACTCG
CGAGGCGTGGGCTCACCAAGACAAACTTGTCGAGATCCACGGCCGGCTTG
GCTTATACCATTGTTCTAGCAATAATTACTGCATTTTAGCGAACGAGACC
TGGGCACAAGCTATCGATGTGTTCGGTCCTGAGCTTGCCGAGCAGATCGA
GGGCGGTGGTGCCGACAGCTCGGATCCTGTAGTTTTGACGCACGTGCCGC
GATGTACAGAATGCGGAACTGGTTATATGATGCCCTTGGCACTCATGTTT
GACGAAATGTATGATAGCCACGCATTTTATCAGAGCGATAAGGCCTTGGC
GGCATTTGAGGAGGCCGACGCTTTGGTGTTTGTCGGTACCTCCTTTCAAG
TCAATATCAGCAACCTTGCAATCGAGGCTGGGCCCCGAAAACGGGGCATA
CCCATTTTCAATTTCAATATTCGAGATGGGCTAGCGAAAGGAGGAGGAAG
ACGCTACGATGTTTTTAACATTATTGGTCCTGCCGAGGAGACGCTGCAGA
AACTTCTCGAGCAAGTCGAGGCCTGCTTGGAGAAGGATAGCCTCGGGCGA
GTCGAAACAGAAAAGCATCGAGAGGTGCTGGGAGGCACACTCTGCGTTGG
GAAAGCAGATTTTCGAACTACGCATGAAGTTGGGAACACTGTGTCAAATC
ACGTGGTCTGCAACAAGTGTCTATCGCAGCCCTCAGCAAACGTTCCTGCG
ACGCCATTTACTTCGAGCGACCAGCCAGGCCAAGCCAAAAGCGGACCCTC
CTACGCATTTGAGACATTTCCTCAGCCGATTTTTTCTTTCCCATTTTCAG
AGGAAGACGTGGAAATTGATTTCAATCCTTGCTACGGCCGGTTGTCTCAC
CCAGATTCTAGGTTGGAAGCAAATATTGATAGCACTTGGGATAGACTCAG
TGAAGAAAGAGAGGCACAGGGGTGCTCTGCCCTTTTCAATGCGGTTAAAT
TTCGACTGGCTGGCTGCCTTTTAGTGAAAGAAGGAGAAGCGCGTCCAATG
AAGCTTTTGCTGGAGCTGTGGTTGACGGATTACAAAACAGCGCGCGGCAC
CAATCATGCTTCGATTGCGCCTCTTCTGCAGGCAGACGGACTTGCCGCCC
ACAAAGACGCACAGGTTTACCTTTCCCAGAAGTTAGGTGTGAGTGCCATT
TTATGTACGCAAGACGGGGACTTGGTGTTCATTGAACGAAGCACCAAAGG
TGTCGCAGATTTCCAGGGCTATATCGACACGCCAGGCGGACACCCAGAGC
CAGGGAACCTAGGCCTGGAATTCCCACTGTCTCCTCCTTCAGCATTTACA
CTTATTCAAACGTTGCATGACCCAGCAAATGCCGCGCTGTTGAAACAACG
CATCCGTCATGAGATCTTCACATCGGCAGCTCAAGAGGTCGCTGACGAGG
TGGGAGTGCCGCTAGACAAGTTGGAAACTCCCAAGCTTTTGGGGCTGGTG
AGACAGCTCGAGTTCGGCGGTGTTCCAAGCCTGACTTTCTTGGTAAATTG
TCAATGTCGGACTTCGGATGTGCACAAATATTATGCGGCAGGACCTAAGG
AGGGCAATGAGTCTACCAAACTGCTGTTCATAAATAAACAAGGTGTTACA
AATTTTCTGACAATCCCAGACTTGAAGCTTGCACCTGCGGCACGAGGAAG
CCTGGAACTCTTCATAGAACACACTTTGTAA
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Synonyms
Publications