rna3511, rna3511 (mRNA) Nannochloropsis gaditana

Overview
Namerna3511
Unique Namerna3511
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2362
Alignment locationCM002461.1:581853..582374 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g69.6128.mrna
Orig protein idgnl|cribi|Naga_100010g69.6128
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:581853..582374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g69gene3382Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3511rna3511-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27158.1cds3502Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3511 ID=rna3511|Name=rna3511|organism=Nannochloropsis gaditana|type=mRNA|length=2362bp
GGCTCAGTCACTAACACGACTCGGCGATGATCCAGGCCGGGCTCTCGCGA
TTCAGTACACCATCCTGTCAGCGTCTTCACACATGTTACACGACAATTCA
ATGTTTACAGGAACTTTGATGCAGGAAAACTGCCATGATATCCACTTGTC
ACTGGCGTCCGAAATAGTTGTGGCTGCTTGCCCGAAAGATAGAGTTTTAC
GGGTGATAGACGTAGCAACTGGGACAACGTACTCAACCTTTGGAGATACA
GCCGCTTCGGGCCTTGCTCCCGTCCGCGGAACACAAACATCCGAAGGATT
GGGCACAGGGGGCGACTACGTCATTTCAAGTCAACTTTTTGAGCAAGCCC
TGGTTTTTCATCGCTGGGGCAAGGCTCAGCCGCTGTTGAAATGTCGGGTG
TCAGAGTCAGTGGGGCCCGTCGTTACTACACCAGACGGATTCTTCTTGCT
CGCGGGGGGGCGATCAGGCCAAATTTATGCGTGGGAGATAGCTTCAGGTT
CCCTTGTAGCGAATTGGGATGCGCACTACAAGGCAATTAGTTGCATGGTC
ATGACAAGTGATGGCGGCTTTTTGATCACAGGCTCGGAAGATACTACTGT
GCGGGCGTGGGCCCTTTCGGACATATTGGCCGCCGAGCGTACAAAAAACG
ATGGAACGAAAACAGCTTGCATTCGTCCTTTCTGCTCTTGGTCCAATCAT
TCCTTACCGGTTACGGGCTTACACTGCGGGCAGGGAGGCCCGACCTGTCG
GATTGTCTCCTGCTCCTTAGACCACCGAGTGCATATCTATGAGCTAGCGA
ACAAAGATGGGGCCCTGTGTACGCTTCAGGCGCCGTCAGGGGTAGCATGC
ACGTCCCTGGATCCAGGAGAGAAGCACTTATTAGTTGGTGGGACAATGGG
CGATATCTTTGTCATTGATATGGACGTGGTATGCCAGGCACGGACGGCGA
GTCGCACTCTTGTGCAGTTTGTGGGAACAGTCGGACCGATTGGAAGCAGC
AAGGAAGATTGGAGAAGGCTGGCGGGTCATCAAAAGGCGGTGATGGCTCT
CACCTTCACCTGGGACGGGCGAATCGCGTTGTCAGCGTCGGAGGACGGTA
GTTTGCGATGGTGGCACATGGACAGTCGCCAGTGCGTCAGGAGAGTGACA
TTTGACAATGGCGGCCCTTTAACTGGTCTCCTTCTGCTCCCGCGTCCCGC
AGCTTTGCTTCACGTTATGCCTAAAGTGGTGCTTCCAGCACCGCTTCAGC
CGTTAAAAAAATATGGCGCCATCTCCGTAACTAATGAGAAAGATGACTTG
ATCTTTTTGAACACCAGGACTCCAAAATGCAAGACACCGGACCCTTACCG
TACGGAGTGTACGTCACTATTGCTTTCCTTCGAAAAGCTATACGATGCGG
CGCTAATGACAAGGGATGCCACCTTTGAAGAAGTGGGAGAGCGTTCCAGA
AAGCATGACGCGTCGATCAATGTGAGTATTCAGGGATCAAGTAAATTCTC
TAACGCGGACAATTGCCTGGATGCGGGAATCAAAGCCGCCAGAAAGAAGT
CCAAGCGACACATAAGAAAAGATCGAATTGTGGGACAGACTTGTAGGCAA
AAAAAGTAAAATGACAGCTACGTAGTGCGATAAGGATAGTAGATGTGTTT
TCAAACATCTTGAAAATAGGCAGCTTTCAAACATGACTCTACTCCGGCAA
CTTCTGTCATATCATTCACCACTCTTTTACCTTCCAAGTTCATATACGGA
GATGCGCTCAAAAAATGAAAACCAAGCGTAAGCCATCGTGAGCGCAAAGA
AGGATAAGATGACAAGCCAATTACTTAGGCGCACCGGCATGTCCTCTGTC
AGCTGCGCCCGTGCCAATGCCAGAGTGGTCAAACCAAAAGCAACAAAATA
GCTTTGGACCGCCGCACGGCGCATATTTCCATCAGTTCCACCTCTGAGAA
CGAACAAAAGATACGCTTGTGCCAAAAGGAAGCAACCGAAAACTCGCATT
GTTACAAACGCGACACGCGCCGTACCACCTTCATGACGGCTGTGGAAGCC
ATCCGAGGAGTGGTGGAGAAGATACACGAGTACTTCCGGAAACAAGGCGC
TGAGAAGGCCAAGTGTAAACATGATGCCGGCGTGAATTGCGAAAAGCTTG
TTTACTCGCTTCTTTGCGTCTCTACCTTGGCCGAAAAAGGAGCCTGCGCT
AAAAGTTGATGAATGAGCACGAGCTGATGTCGAAGACATGCGGTGCATGG
CAGCCCTTTCCAGTGCCTATCTTGTCACTGCCTCCACAATAATGGACTTA
TTGTATTTATGTGATAAGAGAGAGCTAAAGTAATCAAAAATGACTCTAGT
TTTCAGGTTTCA
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protein sequence of rna3511

>rna3511-protein ID=rna3511-protein|Name=rna3511|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MHRMSSTSARAHSSTFSAGSFFGQGRDAKKRVNKLFAIHAGIMFTLGLLS
ALFPEVLVYLLHHSSDGFHSRHEGGTARVAFVTMRVFGCFLLAQAYLLFV
LRGGTDGNMRRAAVQSYFVAFGLTTLALARAQLTEDMPVRLSNWLVILSF
FALTMAYAWFSFFERISVYELGR
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mRNA from alignment at CM002461.1:581853..582374+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3511 ID=rna3511|Name=rna3511|organism=Nannochloropsis gaditana|type=mRNA|length=522bp|location=Sequence derived from alignment at CM002461.1:581853..582374+ (Nannochloropsis gaditana)
ATGCACCGCATGTCTTCGACATCAGCTCGTGCTCATTCATCAACTTTTAG
CGCAGGCTCCTTTTTCGGCCAAGGTAGAGACGCAAAGAAGCGAGTAAACA
AGCTTTTCGCAATTCACGCCGGCATCATGTTTACACTTGGCCTTCTCAGC
GCCTTGTTTCCGGAAGTACTCGTGTATCTTCTCCACCACTCCTCGGATGG
CTTCCACAGCCGTCATGAAGGTGGTACGGCGCGTGTCGCGTTTGTAACAA
TGCGAGTTTTCGGTTGCTTCCTTTTGGCACAAGCGTATCTTTTGTTCGTT
CTCAGAGGTGGAACTGATGGAAATATGCGCCGTGCGGCGGTCCAAAGCTA
TTTTGTTGCTTTTGGTTTGACCACTCTGGCATTGGCACGGGCGCAGCTGA
CAGAGGACATGCCGGTGCGCCTAAGTAATTGGCTTGTCATCTTATCCTTC
TTTGCGCTCACGATGGCTTACGCTTGGTTTTCATTTTTTGAGCGCATCTC
CGTATATGAACTTGGAAGGTAA
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Coding sequence (CDS) from alignment at CM002461.1:581853..582374+

>rna3511 ID=rna3511|Name=rna3511|organism=Nannochloropsis gaditana|type=CDS|length=522bp|location=Sequence derived from alignment at CM002461.1:581853..582374+ (Nannochloropsis gaditana)
ATGCACCGCATGTCTTCGACATCAGCTCGTGCTCATTCATCAACTTTTAG
CGCAGGCTCCTTTTTCGGCCAAGGTAGAGACGCAAAGAAGCGAGTAAACA
AGCTTTTCGCAATTCACGCCGGCATCATGTTTACACTTGGCCTTCTCAGC
GCCTTGTTTCCGGAAGTACTCGTGTATCTTCTCCACCACTCCTCGGATGG
CTTCCACAGCCGTCATGAAGGTGGTACGGCGCGTGTCGCGTTTGTAACAA
TGCGAGTTTTCGGTTGCTTCCTTTTGGCACAAGCGTATCTTTTGTTCGTT
CTCAGAGGTGGAACTGATGGAAATATGCGCCGTGCGGCGGTCCAAAGCTA
TTTTGTTGCTTTTGGTTTGACCACTCTGGCATTGGCACGGGCGCAGCTGA
CAGAGGACATGCCGGTGCGCCTAAGTAATTGGCTTGTCATCTTATCCTTC
TTTGCGCTCACGATGGCTTACGCTTGGTTTTCATTTTTTGAGCGCATCTC
CGTATATGAACTTGGAAGGTAA
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Synonyms
Publications