rna3509, rna3509 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3509
Unique Name	rna3509
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1293
Alignment location	CM002461.1:579430..581117 +

Link to JBrowse

Properties


Property Name	Value
Product	endoplasmic oxidoreductin-2
Orig transcript id	gnl\|cribi\|Naga_100010g68.6181.mrna
Orig protein id	gnl\|cribi\|Naga_100010g68.6181
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:579430..581117 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g68	gene3380	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3509	rna3509-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27211.1	cds3500	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:579430..581117+
coding sequence from alignment at CM002461.1:579430..581117+

mRNA sequence

>rna3509 ID=rna3509|Name=rna3509|organism=Nannochloropsis gaditana|type=mRNA|length=1293bp
ATGTCCTTTTCCAAGATCGCCATTTTGCTTCCATTTCTTGGGTGTGTTGA
AGGATTCGTCTTGCCATTTCCGCCTGTTCCAGCTGGTGTTTCGTCTTCCT
TCTCAGTGCGGTCTGACGGTCGTCATCTCCACTTAAGACCTGCACTGAAA
ACAGCAGCGGGCGCAAGCAGTGTTGATATCTCCTCAGTCAAGACTGACTC
AATTACTGGGCCGACTACACTGGGACCTCTGCCCCCGCTTGAAGGCTTTG
ACGGAAAGGCTGGAAGCTCACCGGCTTTAACAACTAATAACCAAGGCGGT
GTATGGGTTCCCCAGATGGCTCGCCCTCGGAGGAATCGGAAGTCTGAGAC
ATTGCGTGCCATGGTGCGTGAAAATATTGTACTTCCTCGGAACTTCATTT
ACCCGCTATTCATCCACGAAGAGCGCTATGAGACCGAAATCCCCTCTATG
CCTGGTCAAAAACGTTTCAGCCTCGCGGGCATGATGGCTGAGGTAGCCGA
GTCCCTTCAATTCGGTGTGAAGACTTTTGTGTTATTCCCGAAAGTTGAGG
ATCGTCTGAAGACGAACGATGGTCGAGAGGCGTACAACCCGGCCGGTATC
GTACCTCGAGCCATCGCTATGATAAAGGATCGCTTTCCAGATGTTACTGT
GATGACAGATGTGGCTCTAGATCCGTACTCAGATCAAGGACATGATGGAA
TTGTGTTGAATGGAAAGATTATAAATGATGAGACCATTGAGCAACTCTGC
AAGCAAGCTGTCTGCCAGGCACGTGCAGGCGCGGACATAGTTGCCCCCAG
CGACATGATGGACGGACGCGTGGGCGCTTTGCGACGGGCGCTGGACTCGG
AGGGGTTCACGGACGTTTCAATCATGTCTTACACTGCTAAGTACGCGTCC
GCTTACTATGGTCCCTTCCGGGACGCACTTGATTCTCATCCCGGCTTCGG
AGACAAAAAAACGTACCAACAGGATCCCGCCAATGGGCGTGAAGCTCTCT
TGGAGGCTGCATTGGATGCGGCTGAAGGAGCTGATTTTCTTATGGTAAAG
CCTGGTATGCCGTACTTGGACGTCATTTTGCGGCTGAAACAGGCCACAAA
CTTACCTATCGCCGCCTACCATGTGTCAGGCGAGTATGCCATGCTCAAGG
CCGCTGCCGAGAGGGGCTGGCTTAATGAAAAGGATGTGGTTCTGGAGACG
ATGACATGCTTCAAGCGTGCAGGTTGCGATATCATCCTTTCGTATTATGC
GAAAATGGCTTCGAAATGGATGATAGAAGATGGATTAATCTAA

protein sequence of rna3509

>rna3509-protein ID=rna3509-protein|Name=rna3509|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MWWMLKPRLLFFWGIFLLVGQLYAQTEGGKRLTSLHALSFFRSRVCQTCD
LVGSVGDCGCDFDTVNQATILHFFPLLTDLAQRTFFRYFKVNLNKDCPFW
HEDMMCSIRDCAVVECEAHEIPPVWIERDAEGRAVRECLKESDTATDRME
MHLGAVDRKEAMVGVDAFAGWEEGDNARVWIEQEEEDQGMTYINLLRNPE
RFTGYAGPSARRAWNAVYENCFELSPGELEAGGHCLEKRVFYRLIAGLQS
SISTHLALEYYDKAQDCWFPNTALFVEKVGKHPERIHNLYFTYLFLLRAI
NKAGPELLLYDYDTGNSEDDECVRSAVQNLVRTSSNTSTADQCHRAFDES
GMFQPRGLTDGAEAAAEEERELHKLRQDFFVRFHNISRVMDCVGCEKCRL
WGKLQILGLGTAIKIVLGRPEDRTLEGSLSFQRNEVISLINTAHQLAKSV
KAVENFQKLEFDDILQWWMWMSGLAFIVVGIFLRVCLHRQEMEKISKEKK
QGDRSNGRRDVGSRLTSSKKTN

mRNA from alignment at CM002461.1:579430..581117+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3509 ID=rna3509|Name=rna3509|organism=Nannochloropsis gaditana|type=mRNA|length=1688bp|location=Sequence derived from alignment at CM002461.1:579430..581117+ (Nannochloropsis gaditana)
ATGTGGTGGATGCTGAAGCCGCGTCTGCTTTTCTTCTGGGGgattttcct
ccttgtggGGCAATTGTACGCCCAAACTGAGGTAAGTGGGCACTGCTGTA
GATTCTTTCTTGCGAAGTATGTTGTAAACCTCGGTATCGTTTACTCAAAA
ACTTAATGCTTGATCGACTTCTCACGATTTTACATTAAATCCCACGGCAG
GGCGGAAAAAGGCTAACGAGTCTCCATGCCTTGAGTTTCTTCCGCTCCCG
CGTCTGTCAGACCTGTGATTTAGTCGGATCCGTAGGAGATTGTGGCTGCG
ATTTTGATACAGTCAATCAGGCCACTATattgcatttttttccgcTTCTG
ACAGATCTAGCCCAACGTACCTTCTTTCGATATTTCAAAGTGAATTTGAA
CAAAGATTGCCCCTTTTGGCACGAGGATATGATGTGCTCCATCCGAGACT
GCGCCGTAGTGGAATGTGAAGCCCACGAGATCCCGCCGGTGTGGATCGAG
CGAGATGCGGAGGGTCGGGCAGTGCGGGAATGCCTCAAAGAATCAGACAC
GGCTACTGACAGAATGGAAATGCATCTGGGCGCGGTCGATCGGAAGGAAG
CTATGGTAGGCGTGGATGCATTTGctgggtgggaagagggcgacaACGCT
CGGGTTTGGATcgaacaggaagaggaggaccaggggaTGACATACATCAA
TCTCTTGCGCAACCCTGAACGTTTTACGGGATATGCAGGACCTTCGGCAC
GTCGCGCATGGAATGCTGTTTATGAAAATTGTTTTGAACTGTCACCAGGA
GAGCTGGAGGCAGGTGGACATTGCCTGGAAAAGCGCGTCTTCTATCGTCT
CATCGCAGGCCTGCAGTCCTCTATCTCCACGCATCTGGCGTTGGAATATT
ACGACAAGGCTCAAGACTGCTGGTTTCCTAACACAGCACTATTCGTGGAG
AAAGTGGGCAAGCATCCGGAGCGCATTCACAATTTGTATTTCACCTATCT
TTTCCTTTTGCGTGCCATAAACAAGGCTGGACCTGAGCTGCTGCTTTACG
ACTACGACACGGGCAACTCGGAAGATGATGAATGTGTACGTAGTGCAGTT
CAAAACCTTGTTCGCACATCTTCCAATACTAGCACCGCAGATCAATGCCA
CCGGGCATTCGACGAGAGCGGCATGTTTCAACCTCGAGGTTTGACAGACG
GGGCTGAGGCCGCTGCAGAGGAAGAGCGCGAGTTGCACAAGCTGCGACAG
GATTTTTTTGTCCGTTTCCACAACATTTCGCGTGTCATGGATTGCGTTGG
ATGTGAAAAATGTCGCCTTTGGGGCAAATTACAGATTCTGGGGTTGGGCA
CCGCTATCAAAATTGTGCTAGGGAGACCAGAGGATAGAACTCTTGAGGgc
agcctttccttccaacgCAACGAGGTTATATCACTCATTAACACGGCTCA
TCAGCTGGCCAAGAGTGTCAAAGCAGTAGAAAATTTTCAAAAACTTGAGT
TTGACGATATATTACAATGGTGGATGTGGATGAGCGGGCTCGCATTCATC
GTAGTAGGCATTTTTCTGCGCGTCTGTCTGCATAGACAAGAAATGGAAAA
AATatcaaaggaaaaaaagcagggCGATAGATCAAATGGGAGAAGAGATG
TTGGATCGCGGTTAACCTCGTCAAAGAAGACGAATTAA

Coding sequence (CDS) from alignment at CM002461.1:579430..581117+

>rna3509 ID=rna3509|Name=rna3509|organism=Nannochloropsis gaditana|type=CDS|length=3138bp|location=Sequence derived from alignment at CM002461.1:579430..581117+ (Nannochloropsis gaditana)
ATGTGGTGGATGCTGAAGCCGCGTCTGCTTTTCTTCTGGGGgattttcct
ccttgtggGGCAATTGTACGCCCAAACTGAGGGCGGAAAAAGGCTAACGA
GTCTCCATGCCTTGAGTTTCTTCCGCTCCCGCGTCTGTCAGACCTGTGAT
TTAGTCGGATCCGTAGGAGATTGTGGCTGCGATTTTGATACAGTCAATCA
GGCCACTATattgcatttttttccgcTTCTGACAGATCTAGCCCAACGTA
CCTTCTTTCGATATTTCAAAGTGAATTTGAACAAAGATTGCCCCTTTTGG
CACGAGGATATGATGTGCTCCATCCGAGACTGCGCCGTAGTGGAATGTGA
AGCCCACGAGATCCCGCCGGTGTGGATCGAGCGAGATGCGGAGGGTCGGG
CAGTGCGGGAATGCCTCAAAGAATCAGACACGGCTACTGACAGAATGGAA
ATGCATCTGGGCGCGGTCGATCGGAAGGAAGCTATGGTAGGCGTGGATGC
ATTTGctgggtgggaagagggcgacaACGCTCGGGTTTGGATcgaacagg
aagaggaggaccaggggaTGACATACATCAATCTCTTGCGCAACCCTGAA
CGTTTTACGGGATATGCAGGACCTTCGGCACGTCGCGCATGGAATGCTGT
TTATGAAAATTGTTTTGAACTGTCACCAGGAGAGCTGGAGGCAGGTGGAC
ATTGCCTGGAAAAGCGCGTCTTCTATCGTCTCATCGCAGGCCTGCAGTCC
TCTATCTCCACGCATCTGGCGTTGGAATATTACGACAAGGCTCAAGACTG
CTGGTTTCCTAACACAGCACTATTCGTGGAGAAAGTGGGCAAGCATCCGG
AGCGCATTCACAATTTGTATTTCACCTATCTTTTCCTTTTGCGTGCCATA
AACAAGGCTGGACCTGAGCTGCTGCTTTACGACTACGACACGGGCAACTC
GGAAGATGATGAATGTGTACGTAGTGCAGTTCAAAACCTTGTTCGCACAT
CTTCCAATACTAGCACCGCAGATCAATGCCACCGGGCATTCGACGAGAGC
GGCATGTTTCAACCTCGAGGTTTGACAGACGGGGCTGAGGCCGCTGCAGA
GGAAGAGCGCGAGTTGCACAAGCTGCGACAGGATTTTTTTGTCCGTTTCC
ACAACATTTCGCGTGTCATGGATTGCGTTGGATGTGAAAAATGTCGCCTT
TGGGGCAAATTACAGATTCTGGGGTTGGGCACCGCTATCAAAATTGTGCT
AGGGAGACCAGAGGATAGAACTCTTGAGGgcagcctttccttccaacgCA
ACGAGGTTATATCACTCATTAACACGGCTCATCAGCTGGCCAAGAGTGTC
AAAGCAGTAGAAAATTTTCAAAAACTTGAGTTTGACGATATATTACAATG
GTGGATGTGGATGAGCGGGCTCGCATTCATCGTAGTAGGCATTTTTCTGC
GCGTCTGTCTGCATAGACAAGAAATGGAAAAAATatcaaaggaaaaaaag
cagggCGATAGATCAAATGGGAGAAGAGATGTTGGATCGCGGTTAACCTC
GTCAAAGAAGACGAATTAAATGTGGTGGATGCTGAAGCCGCGTCTGCTTT
TCTTCTGGGGgattttcctccttgtggGGCAATTGTACGCCCAAACTGAG
GGCGGAAAAAGGCTAACGAGTCTCCATGCCTTGAGTTTCTTCCGCTCCCG
CGTCTGTCAGACCTGTGATTTAGTCGGATCCGTAGGAGATTGTGGCTGCG
ATTTTGATACAGTCAATCAGGCCACTATattgcatttttttccgcTTCTG
ACAGATCTAGCCCAACGTACCTTCTTTCGATATTTCAAAGTGAATTTGAA
CAAAGATTGCCCCTTTTGGCACGAGGATATGATGTGCTCCATCCGAGACT
GCGCCGTAGTGGAATGTGAAGCCCACGAGATCCCGCCGGTGTGGATCGAG
CGAGATGCGGAGGGTCGGGCAGTGCGGGAATGCCTCAAAGAATCAGACAC
GGCTACTGACAGAATGGAAATGCATCTGGGCGCGGTCGATCGGAAGGAAG
CTATGGTAGGCGTGGATGCATTTGctgggtgggaagagggcgacaACGCT
CGGGTTTGGATcgaacaggaagaggaggaccaggggaTGACATACATCAA
TCTCTTGCGCAACCCTGAACGTTTTACGGGATATGCAGGACCTTCGGCAC
GTCGCGCATGGAATGCTGTTTATGAAAATTGTTTTGAACTGTCACCAGGA
GAGCTGGAGGCAGGTGGACATTGCCTGGAAAAGCGCGTCTTCTATCGTCT
CATCGCAGGCCTGCAGTCCTCTATCTCCACGCATCTGGCGTTGGAATATT
ACGACAAGGCTCAAGACTGCTGGTTTCCTAACACAGCACTATTCGTGGAG
AAAGTGGGCAAGCATCCGGAGCGCATTCACAATTTGTATTTCACCTATCT
TTTCCTTTTGCGTGCCATAAACAAGGCTGGACCTGAGCTGCTGCTTTACG
ACTACGACACGGGCAACTCGGAAGATGATGAATGTGTACGTAGTGCAGTT
CAAAACCTTGTTCGCACATCTTCCAATACTAGCACCGCAGATCAATGCCA
CCGGGCATTCGACGAGAGCGGCATGTTTCAACCTCGAGGTTTGACAGACG
GGGCTGAGGCCGCTGCAGAGGAAGAGCGCGAGTTGCACAAGCTGCGACAG
GATTTTTTTGTCCGTTTCCACAACATTTCGCGTGTCATGGATTGCGTTGG
ATGTGAAAAATGTCGCCTTTGGGGCAAATTACAGATTCTGGGGTTGGGCA
CCGCTATCAAAATTGTGCTAGGGAGACCAGAGGATAGAACTCTTGAGGgc
agcctttccttccaacgCAACGAGGTTATATCACTCATTAACACGGCTCA
TCAGCTGGCCAAGAGTGTCAAAGCAGTAGAAAATTTTCAAAAACTTGAGT
TTGACGATATATTACAATGGTGGATGTGGATGAGCGGGCTCGCATTCATC
GTAGTAGGCATTTTTCTGCGCGTCTGTCTGCATAGACAAGAAATGGAAAA
AATatcaaaggaaaaaaagcagggCGATAGATCAAATGGGAGAAGAGATG
TTGGATCGCGGTTAACCTCGTCAAAGAAGACGAATTAA

Synonyms

Publications