rna3506, rna3506 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3506
Unique Name	rna3506
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2311
Alignment location	CM002461.1:567272..569851 +

Link to JBrowse

Properties


Property Name	Value
Product	bifunctional dethiobiotin synthetase adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Orig transcript id	gnl\|cribi\|Naga_100010g64.6143.mrna
Orig protein id	gnl\|cribi\|Naga_100010g64.6143
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:567272..569851 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g64	gene3377	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3506	rna3506-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27173.1	cds3497	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:567272..569851+
coding sequence from alignment at CM002461.1:567272..569851+

mRNA sequence

>rna3506 ID=rna3506|Name=rna3506|organism=Nannochloropsis gaditana|type=mRNA|length=2311bp
ACTTGCAGTCCCGTCTATCAGGAAACACATTTCTATATGTTCTCAACCAC
TACGAGCGTATAACTCCAGTTACAAAACAGACCTGAAAACTAGTAGCTCT
CTCAGCCTGAGGCCCGGGGGAGGCAGTTAGGACAAGACAGAGCAGGAGAA
TCACAAAAACTGCTGACACCCCCGGACTCCCGAAATTTTTGAATCAACGA
CTCTTCAATAAGCATGGGAAGCATTGCAAAAAGAGTTACGACATAAGTAA
CGATATCAAGCGCAGCGATAGCGGAAAGGAGGACACAAGCAGCGCCGTAA
GAGCAAGCCACCACGAGACGACAAGGAGACGAACTTTCCAGAAACAGACT
TTTAATACACCAAAAAGTGAATTAATTGAAAACATTCGAAATATAGAATC
AATAGAGTGATTTAGAACTTGGTGATAGCGGAAGGAAAGTTGGTAAGATA
GTTTAACAGCGCTCAAGCATAACGTATCACAGAGCGACGCATTTCACCAC
TGAGCGATGATCGACCATTATCGTCCGAGAAAATGTAAAAACGCAGTATG
GGAGATTGACAGAACCAAGCGAGCACGAAGACATGGCATCACGAAAAAAC
TGAAAATCTAACCTCAGTTAATTTTCCTGCATTTTCCAGTGATTGTGCTA
TACCCGCGATGCCTTAGGCTTGTAAGGGCCTCAGAGATAGACTACCTTTG
AGTTGAACGAGTATGCGACCAAACCGATGGCGCTGAATGCTCCTTTCGCA
AGTTGTACGTTTCCTATTACTATCTTGGGTCGAAGGATGGGGTTGCCGAC
GGTCGCGCAGTCCTGAACAGTTCATGGCGAACAATAAGGGAGGCCTTGTT
GGAAGCTCTCACGCGAATTCCTCTTCAAGTGCCGTCTCGCGGGATCGCAA
TGGAACCAATGGAGGTTGTGGAGAAACTGTTGGCGAAGCAGGATGGATGT
CGTCGACGAATGTCTTCACCGATGGGACTCATATTTCTCACGATAAGTTA
ATCATTGACGAGAGCAGCGCGACCGGAGGACGCCCCAAGGCTATCTTCGG
TGCTGCCATCATCAAAGATTTGCGGTGTATCCGAAATGCAATATGTGAAG
ATAAGCCAGAGGACGACAAGTTGGAGGATAGCAGCCTGGAGGCTCTGCTG
TCGAGCCCTGAGTCGGATGACGAAAGCTCCTGGATCAGTCAATTTGTTCG
TGCGCCAGGTCACGAATTCTTCTGCGCCGTGCCATGTTCTTTCCTGGCAG
AAGACTTTAATTGGTTGGGGCTCCCTCTCGACATGGCTGCAGTCGACCTC
CTCCTTGAGCGCGTCGCGAAAGGCGGCTCAACCAAACGCTGTCGGTCACT
ACCTCGGGACGAGGCAGCTACCCAACGCATGTATGGACTCATCCATGCGC
GCTTCATTGTCACACAAAAAGGCTTGCAGGTGATGCGAGACAAATTCCAA
CAAGCACATTTTGGTCGCTGTCCCCGTCTGGCGTGCTGTGGTCAGCCAGT
GCTCCCCCTGGGCAACTCGAACGAGGAAATCGGCGAAACCGATCAAAACA
AAGGTAAGGTGGTTGAGAAGCGACACAGGAGTGATGGCGCTAGGGAATGC
GTTAAAATCTTTTGCCCACGGTGTCGAGAAGTCTATTGGCCCGCGGACGC
ATCCCACCAGCAGCTCAACGGAGCCTACTGGGGGCCAACGTTCGCCCATC
TTTTCCTGTTGGCATTCCCGGAGCTGAACCTGGAAGCAGCCCACTCCTGG
ACCCCAATACCGTCAATATTTCGGCAGGATGGAGTTAATCGCAGGTACGA
CCCGGTCAGGCTCGGCCGCAAGTGTCTTGGCCGCGGAGGCATTACGACTG
ACATCCAGGCTACCTCCTCTATCGACTTGGACGACGACCTTTGTCACTTG
ACGGAGAGAGAGTCATACGTACCGCGCATCTTTGGCTTTCGCTTGGAATG
TAAGCTACGCAAGCAAGACGTAACGACGCAACAAAGAAGTGAACAGAAAG
ATAACTCTACGCGGCTGTGTGCAACCAGACCGTCGAAAGGCAAATCCCTT
ACTGGGACAAGCTTCAAGGGAGCGGTCACGACAAAAATTTGTTTTTGGAA
GAGCTGTGGCGTGGCACGCTTCATTCGAGGAAGATTTTTTGTAGCGGTGT
GCTTTTTTAAGAAGAGAAACGCAGAGAGTGATCAATAACTTTAGATCCCC
TTCGCGAAGGTCTCGATGTAAATTAAAACAATAAGTTGAATATTTTAGAG
CCCACCAGACAAATTCCCTCGCAAAAATTAATACAATAAAAATAAAAGAA
GTGTTTAGTGT

protein sequence of rna3506

>rna3506-protein ID=rna3506-protein|Name=rna3506|organism=Nannochloropsis gaditana|type=polypeptide|length=859bp
MCSLTIQVFGANTDVGKTVISAGLLRAASNRPLRRRTTYIKPLQTGKIHD
GSFVQRYTSADVSCHTLYSWETPLSPHVAATKEGKTISSEELLGMLRTCL
QQAQESHTVGGDGGGVRQREGSNVGDLVVVETAGGVLSPGPSPLQTQADL
YRPLRLPVLLVGDGRLGGISSTLAAYESLYCRGYEVHAIAVLEVPHYIEN
AAAVSEYITGTLGHAETPVLSLPHLPEVSSVSFSTGDVDKDVLLGGLDQW
YHQHEHVFHHLLDTLIDRERVRIQRLQKMTTQAAQVFWYPFTQHSGLSGT
DLHVVDSAYGDNYTLISKSSEDGDAKERVPCSRTLIDACASWWTQGLGHG
RVDVALAVGAAAGRFGHVIFPGNVHEPALRLAELMLAGPGQGWASRVFFS
DNGSTAMEIAVKMALKKNSVDLKYEKGCSKEEFRVEQPNDKISATPLTVV
TQRDCYHGDTLGCMDAAAPTIFNTGQHPWYQPRTLSLTVPTFGYVSGHLQ
VEIPPEITRAAGQSALQLPDSGQVLKFPGGLATLLDVHAREGSDAAVIYR
KAIRAQFIAFERGEEGILSSNTVIPLRGEAGQGHRCRKLGAVLLEPVLMG
AAGMVMVDPLFQRILTLEGRAYGLPVVFDEIASGLYRLGCASAAELLGVA
PDIACYGKTLTGGYLPMALTLTTEAVFEAFHGTNKSDALLHGHSYTANPL
GCAAAVHALKAYAVIHETNIRTSQECCQRKEDFFPNKNKCSSHHNICRYN
EDQVAALSNLSGVRRAVALGTVLAVELTEVESSNRKGYSSTASTHIVNDL
REAGIYARPLGNVVYLIASQVSSGGTFECLVDTLDRVLRRRGDTLGKFTH
DMTTSGVVI

mRNA from alignment at CM002461.1:567272..569851+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3506 ID=rna3506|Name=rna3506|organism=Nannochloropsis gaditana|type=mRNA|length=2580bp|location=Sequence derived from alignment at CM002461.1:567272..569851+ (Nannochloropsis gaditana)
ATGTGTTCTCTGACAATCCAAGTTTTCGGTGCTAACACGGATGTGGGGAA
GACCGTCATCTCTGCGGGTTTATTGCGGGCGGCATCGAACAGGCCCCTCA
GGCGGCGGACAACCTATATAAAACCATTGCAGACTGGGAAGATACATGAT
GGATCATTCGTACAACGTTACACTTCTGCTGACGTATCTTGTCACACCTT
ATATAGCTGGGAGACGCCACTATCTCCTCATGTAGCTGCGaccaaggaag
gaaaaaccATATCCAGTGAGGAATTGCTTGGGATGTTACGGACATGTTTA
CAGCAGGCGCAGGAATCTCATACAGtagggggggatggagggggagtaAG
GCAACGTGAGGGCTCGAACGTAGGGGATTTAGTGGTTGTGGAGACTGCGG
GCGGTGTGCTGAGTCCCGGTCCGTCGCCCCTGCAGACACAGGCCGATCTG
TATCGACCCCTGCGGCTACCTGTTTTGCTAGTCGGAGATGGGAGATTGGG
AGGCATTTCTAGTACCTTAGCAGCGTACGAGTCCCTATACTGCCGAGGAT
ACGAGGTGCATGCCATAGCTGTGTTGGAGGTCCCTCACTACATTGAGAAC
GCGGCTGCCGTAAGCGAGTACATTACTGGCACGTTAGGGCATGCGGAGAC
TCCCGTTTTGTCTCTTCCTCATCTGCCCGAAGTCTCATCTGTCTCTTTCT
CTACTGGCGATGTAGACAAAGACGTCCTCTTAGGCGGCTTGGATCAGTGG
TACCATCAACACGAACATGTCTTCCATCACTTGCTCGATACGCTGATAGA
TAGAGAACGAGTCCGCATCCAACGATTGCAGAAAATGACAACGCAAGCTG
CCCAAGTGTTTTGGTACCCCTTCACGCAGCATAGTGGGCTAAGTGGCACG
GACCTGCATGTAGTGGATTCAGCTTACGGTGACAATTACACTCTTATCAG
CAAGTCCTCCGAGGACGGTGATGCAAAAGAGCGCGTCCCTTGTTCACGGA
CTCTCATTGATGCATGTGCCTCCTGGTGGACGCAAGGGCTAGGTCATGGC
CGAGTGGATGTCGCCCTTGCTGTCGGCGCCGCTGCCGGGCGCTTCGGCCA
CGTTATTTTCCCTGGCAACGTGCACGAGCCGGCCCTGCGGCTGGCGGAGT
TAATGCTGGCTGGACCCGGTCAGGGGTGGGCCAGTCGGGTATTTTTTAGC
GACAACGGGTCTACCGCTATGGAGATAGCTGTCAAGATGGCGTTGAAAAA
AAATTCCGTTGACTTGAAATATGAAAAGGGGTGCTCCAAGGAAGAATTCC
GAGTTGAGCAGCCAAATGATAAGATCTCAGCGACGCCTCTGACGGTTGTC
ACTCAACGAGACTGCTACCACGGGGACACCCTTGGGTGCATGGACGCGGC
CGCTCCCACTATTTTTAACACCGGGCAGCATCCTTGGTACCAGCCGCGGA
CCCTCTCCCTGACAGTGCCAACGTTCGGATACGTAAGCGGCCATCTTCAG
GTCGAGATTCCGCCCGAAATCACCCGTGCCGCTGGACAGAGTGCCCTGCA
ACTACCAGACAGTGGACAAGTCCTTAAGTTTCCGGGGGGCCTGGCCACTC
TCCTAGACGTACACGCCCGCGAGGGCTCTGACGCGGCGGTCATATACCGA
AAGGCCATCCGGGCGCAGTTCATTGCCtttgagagaggagaggaaggaat
cTTGTCATCTAACACAGTCATACCTTTGCGAGGTGAGGCGGGGCAAGGTC
ATCGCTGTCGGAAGCTCGGCGCCGTCCTTTTGGAGCCGGTCTTGATGGGC
GCTGCGGGGATGGTGATGGTTGACCCGCTATTTCAGCGGATCTTGACATT
GGAGGGCCGGGCTTATGGCCTTCCTGTAGTCTTTGACGAGATAGCAAGCG
GCCTTTACCGCTTGGGATGTGCATCAGCTGCGGAGCTACTAGGAGTTGCT
CCGGACATCGCCTGTTATGGAAAGACCCTGACGGGCGGGTACCTGCCCAT
GGCGCTGACCCTCACCACCGAAGCCGTTTTTGAGGCTTTCCATGGGACGA
ATAAATCagatgccctcctccacggacATTCCTACACTGCAAATCCACTG
GGCTGTGCCGCTGCCGTGCACGCGTTAAAAGCCTATGCTGTGATACATGA
AACCAACATACGAACGTCACAGGAGTGTTGtcaaaggaaagaggattTTT
TTCCGAATAAGAACAAGTGCAGCAGTCACCACAACATATGTCGCTATAAT
GAGGATCAAGTGGCGGCCCTATCAAACCTTTCCGGTGTGCGAAGGGCAGT
CGCCCTCGGCACCGTGTTAGCGGTTGAACTTACGGAGGTCGAATCGAGCA
ACCGGAAAGGATACAGCTCCACAGCTTCTACGCACATCGTTAACGACCTC
AGGGAAGCAGGTATATATGCGAGACCCTTAGGAAATGTGGTATACCTTAT
CGCGTCTCAGGTGTCTTCGGGAGGGACATTTGAATGTCTCGTAGACACAC
TTGATCGTGTTCTCCGTCGCCGAGGAGATACGTTGGGTAAGTTTACCCAT
GATATGACCACCAGCGGTGTAGTGATATAA

Coding sequence (CDS) from alignment at CM002461.1:567272..569851+

>rna3506 ID=rna3506|Name=rna3506|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002461.1:567272..569851+ (Nannochloropsis gaditana)
ATGTGTTCTCTGACAATCCAAGTTTTCGGTGCTAACACGGATGTGGGGAA
GACCGTCATCTCTGCGGGTTTATTGCGGGCGGCATCGAACAGGCCCCTCA
GGCGGCGGACAACCTATATAAAACCATTGCAGACTGGGAAGATACATGAT
GGATCATTCGTACAACGTTACACTTCTGCTGACGTATCTTGTCACACCTT
ATATAGCTGGGAGACGCCACTATCTCCTCATGTAGCTGCGaccaaggaag
gaaaaaccATATCCAGTGAGGAATTGCTTGGGATGTTACGGACATGTTTA
CAGCAGGCGCAGGAATCTCATACAGtagggggggatggagggggagtaAG
GCAACGTGAGGGCTCGAACGTAGGGGATTTAGTGGTTGTGGAGACTGCGG
GCGGTGTGCTGAGTCCCGGTCCGTCGCCCCTGCAGACACAGGCCGATCTG
TATCGACCCCTGCGGCTACCTGTTTTGCTAGTCGGAGATGGGAGATTGGG
AGGCATTTCTAGTACCTTAGCAGCGTACGAGTCCCTATACTGCCGAGGAT
ACGAGGTGCATGCCATAGCTGTGTTGGAGGTCCCTCACTACATTGAGAAC
GCGGCTGCCGTAAGCGAGTACATTACTGGCACGTTAGGGCATGCGGAGAC
TCCCGTTTTGTCTCTTCCTCATCTGCCCGAAGTCTCATCTGTCTCTTTCT
CTACTGGCGATGTAGACAAAGACGTCCTCTTAGGCGGCTTGGATCAGTGG
TACCATCAACACGAACATGTCTTCCATCACTTGCTCGATACGCTGATAGA
TAGAGAACGAGTCCGCATCCAACGATTGCAGAAAATGACAACGCAAGCTG
CCCAAGTGTTTTGGTACCCCTTCACGCAGCATAGTGGGCTAAGTGGCACG
GACCTGCATGTAGTGGATTCAGCTTACGGTGACAATTACACTCTTATCAG
CAAGTCCTCCGAGGACGGTGATGCAAAAGAGCGCGTCCCTTGTTCACGGA
CTCTCATTGATGCATGTGCCTCCTGGTGGACGCAAGGGCTAGGTCATGGC
CGAGTGGATGTCGCCCTTGCTGTCGGCGCCGCTGCCGGGCGCTTCGGCCA
CGTTATTTTCCCTGGCAACGTGCACGAGCCGGCCCTGCGGCTGGCGGAGT
TAATGCTGGCTGGACCCGGTCAGGGGTGGGCCAGTCGGGTATTTTTTAGC
GACAACGGGTCTACCGCTATGGAGATAGCTGTCAAGATGGCGTTGAAAAA
AAATTCCGTTGACTTGAAATATGAAAAGGGGTGCTCCAAGGAAGAATTCC
GAGTTGAGCAGCCAAATGATAAGATCTCAGCGACGCCTCTGACGGTTGTC
ACTCAACGAGACTGCTACCACGGGGACACCCTTGGGTGCATGGACGCGGC
CGCTCCCACTATTTTTAACACCGGGCAGCATCCTTGGTACCAGCCGCGGA
CCCTCTCCCTGACAGTGCCAACGTTCGGATACGTAAGCGGCCATCTTCAG
GTCGAGATTCCGCCCGAAATCACCCGTGCCGCTGGACAGAGTGCCCTGCA
ACTACCAGACAGTGGACAAGTCCTTAAGTTTCCGGGGGGCCTGGCCACTC
TCCTAGACGTACACGCCCGCGAGGGCTCTGACGCGGCGGTCATATACCGA
AAGGCCATCCGGGCGCAGTTCATTGCCtttgagagaggagaggaaggaat
cTTGTCATCTAACACAGTCATACCTTTGCGAGGTGAGGCGGGGCAAGGTC
ATCGCTGTCGGAAGCTCGGCGCCGTCCTTTTGGAGCCGGTCTTGATGGGC
GCTGCGGGGATGGTGATGGTTGACCCGCTATTTCAGCGGATCTTGACATT
GGAGGGCCGGGCTTATGGCCTTCCTGTAGTCTTTGACGAGATAGCAAGCG
GCCTTTACCGCTTGGGATGTGCATCAGCTGCGGAGCTACTAGGAGTTGCT
CCGGACATCGCCTGTTATGGAAAGACCCTGACGGGCGGGTACCTGCCCAT
GGCGCTGACCCTCACCACCGAAGCCGTTTTTGAGGCTTTCCATGGGACGA
ATAAATCagatgccctcctccacggacATTCCTACACTGCAAATCCACTG
GGCTGTGCCGCTGCCGTGCACGCGTTAAAAGCCTATGCTGTGATACATGA
AACCAACATACGAACGTCACAGGAGTGTTGtcaaaggaaagaggattTTT
TTCCGAATAAGAACAAGTGCAGCAGTCACCACAACATATGTCGCTATAAT
GAGGATCAAGTGGCGGCCCTATCAAACCTTTCCGGTGTGCGAAGGGCAGT
CGCCCTCGGCACCGTGTTAGCGGTTGAACTTACGGAGGTCGAATCGAGCA
ACCGGAAAGGATACAGCTCCACAGCTTCTACGCACATCGTTAACGACCTC
AGGGAAGCAGGTATATATGCGAGACCCTTAGGAAATGTGGTATACCTTAT
CGCGTCTCAGGTGTCTTCGGGAGGGACATTTGAATGTCTCGTAGACACAC
TTGATCGTGTTCTCCGTCGCCGAGGAGATACGTTGGGTAAGTTTACCCAT
GATATGACCACCAGCGGTGTAGTGATATAA

Synonyms

Publications