rna3504, rna3504 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3504
Unique Name	rna3504
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2392
Alignment location	CM002461.1:563178..564770 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent metalloprotease
Orig transcript id	gnl\|cribi\|Naga_100010g62.6106.mrna
Orig protein id	gnl\|cribi\|Naga_100010g62.6106
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:563178..564770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g62	gene3375	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3504	rna3504-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27136.1	cds3495	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:563178..564770+
coding sequence from alignment at CM002461.1:563178..564770+

mRNA sequence

>rna3504 ID=rna3504|Name=rna3504|organism=Nannochloropsis gaditana|type=mRNA|length=2392bp
GGCCCATACGCCCGACCGCATGACCCCACGACACCCATGCTGATGTGCTT
TCTTCCTTTACATCATTTACTCAACATCACAAACAGGACGTTCTGAGACT
TGCGACTTTTTAAGCCAAGGGTAGGGCTTCAAATTATCAAACTTTGCCAT
TTGCCTTTTTTGGATAAAGACCCTATTTGGTAGACTGTTGGCAAGTAGGA
GGACGAAAGCCACGTGCTTCGATTAGCAAAGCCACATATTTCTTGCGAGT
GAAAAGGATGCAGACTTCGAGCTTCAATGTCGCGGCCAATGTCCTTCTTT
TGACCTTGATTCAGTTTTGGGCAGTTGTCGAAGCGCAGCCCGGAATGGGT
TGGGAGGCTCAATGCATCGGGCAATGGCTGCAATGCGGCGGGCGCAATTA
TTGGGGTCCTACCAATTGCTGTCCAGGGACCCGATGCGAGTACGTGAACG
AGTACTGGTGGCAGTGCAATCCAAGCCAAGCTCCACTTGCGCCTATGGCG
ACCCCCGCTCCGACACCGGTCGTCACAACAGGAAATACTGTGGCTCCATC
TGACCTCACTCCTGATCCCACTGCTCCTCCTTCTGAGCCCCTCGAGAACG
TTCCACTGGACTCACCCGTCCCTTCTCCGGCACCTACGCATAGACCACAT
CATTGGGGCCACCACCATCATCCCTCGTCAACAAGCGCAACGTCGACAGC
AACACCGACACCGTTCCCGACCGAAGCCGGTCCGCCATTTTGGGAACAAG
ACTGTTTTCGTGTTCGAAAGAATATACTATCGCTTACCCCGGACGAGCTT
GCAGATTTTATAGAGGCTTTGCAGACCTTGAAGGCAAGTGGTTTGTACGA
TACGATTACTGCAATCCATGGAAATCCGACGACTTTCAATCTTTTTCACG
GCAACGATTACTTTCTACCCTGGCATCGCTGGTACGTCTTGCAAATTGAA
AGCGCAGTGCGTGACTTGGGAGGCAAGTTCTCTTGTTTCGCGATGCCTTA
CTGGGACTGGACGCTGGATGCCGGACGGGAGACAGAGTCCCCTCTTTGGG
GGATTTTTGGCCCGATGGGCAAAAAGAATGACTCCTTCTGCATGAAAGAA
GGCCCTTTTGCCGAATGGACAAACAGCAAGGGAGGGTGCTTGAAGCGCAT
TGGCTCTGATTCTTACAGATTTTTCTCACCGGCAGAGGTCTTGGACCTTA
TTATGGGTAAGAAGACTCTGGTGGGAGACTTTCGGCCGGCTTTTGAAGCT
GGTGCGCATTCTCGGCCGCATCTATTTTTGGGTGGAGCCATGAATAGCTT
TGCAAGCCCCGACGATCCCATTTTTTGGTTACACCATGCATTTGTTGATA
AAATCTGGGCAATGTGGCAGGATTGCCACAGGATTCTGGATCCAGCGAAC
ATTCTCGACACCGATTTCAAGCCCGACCAAGTAGACGTAGAGCTGGCTTA
CGCTCCCGGCATAACTACTCGCTCCATGTGGTCTACGCGCGAGCTAGGTT
ACACGTATGAAACCGATATAATGTCGGCGTATACCTTTCTCAATACGTGC
CACTGGTCCACCCTGAAGCCCAATCCTATTTTAAACATTAGTTTGCCTGC
ACCACCTATGCCTGAGATCAGCCCTGAAACACGTCAATCGCCGCCTTTCC
CTGAAAAAGGTGTGACCGCACCTTTGTTACATCCTTCCACGGTGGCAGCG
CTTGCTGATGCACAGAAGCATCAAGATATGCGATCCAACACGACAGGACA
GAGCTCACATCTACGCGGCAAGAATTACGTACCCTATCATAAGAAGCATC
GAATCCCATCGACCAATGCTTCAATACACACAAAAACCATAGATAAAAGT
GGGCAGGACATGCAGGCTATTTTAGTGCCCACGAAAGAATGGGCTGCAGC
TCAAGCGAAAATGGCTCCCTATGAACCCCACGGCAAGGGTTTGATCGTGG
AAGAGAATCGTGTATTTACAGCGTGTATGGGTAGCGACCGACAAGATAAC
GTTGAAAAGAAACGTGCTGAGTGCCTCAAAGTGGTACTCAAACGTGATTG
TGAAATGCTGGGGTTCATTTGTGACCTACCTGACACATACAGAGATGGCA
TGCATATGGAGGCTGATGAAAATGTTTTCAAGAAGGACAGCATGTGCGCA
CGCTCCTGCCATGGCTGATAGAAATATCAGCAATCAGTCTCGAGGAAAGC
ATCGCGTGAAGTGCAAGAAATGTGACAAATAGGAAATTGAAAATTGAAAC
CGATATGTATGCATTGCGATCTTGTAGGGAGGAAAGGTTACACATTCTGA
GGTGGTTCTATACATGGATACATGGTGACTTCAAGTACAGGAAAAGAAAA
AAGACGATGTACATTTTTCTGGAGCCGCGTTGCGAAATCCCG

protein sequence of rna3504

>rna3504-protein ID=rna3504-protein|Name=rna3504|organism=Nannochloropsis gaditana|type=polypeptide|length=468bp
MANALSPRGQISTMSSPSFSSSRSWMISSILTKLLGITKYLWPRAPVYLP
FSDFVKHAQEGKLASVMMNQDKFEVQMKAGDSIMLAGGASLVPSSKVSRQ
QIYHTSVIPQLDRQWIVEMLQKNGVRFGTGTPSWSRRMVTLLLTIAPFLY
LALVYRMMNKLYNPTDSVGRERKNLQQKPKKRVITFKDVAGIDAAKLELV
EVVNFLRDRARYDAIGARLPKGILLSGAPGTGKTLLARAVANEAGVSFIS
CSASEFCELLVGRGAARMRDLFQRGFSSSPCIIFIDELDALAKTRGSFSS
NDEREQTLNQLLCEMDGFEGGENCVLVIAATNRPEVLDPALIRPGRFDRH
IAVGLPDTRGRRAILDVHSRHVCLAPGVDMQRIATRSKGYSGAELSNVVN
EAALLAVRAGLGVTTQACFEEALERNNQSRILALQLDGFGNGDMGVNSTV
QDLHNKLQNRNRTNLQDP

mRNA from alignment at CM002461.1:563178..564770+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3504 ID=rna3504|Name=rna3504|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp|location=Sequence derived from alignment at CM002461.1:563178..564770+ (Nannochloropsis gaditana)
TGCTGGCCTCATCGTGTGTCGAACTCTAACACTCCTGCGTGTCTTGCATT
GTTACAAAGGCAAATTAAAAACATTACACTGGAGCTTGGTCTTCGCGCCT
CGGCTTCGCGATGGCCAACGCCCTTTCGCCTAGGGGCCAAATCTCTACCA
TGTCGTCaccatccttttcttcttcccggaGCTGGATGATTTCATCAATA
CTCACGAAGCTACTTGGAATAACTAAGTACTTGTGGCCTCGTGCACCAGT
CTATCTGCCTTTTTCCGATTTTGTGAAGCATGCACAGGAGGGCAAATTGG
CTTCCGTGATGATGAATCAAGACAAATTTGAGGTTCAAATGAAGGCGGGA
GACAGTATCATGTTGGCTGGAGGCGCCAGCCTCGTGCCCTCTTCAAAAGT
GTCCCGACAGCAAATATACCACACATCTGTCATCCCGCAACTCGACAGAC
AATGGATTGTCGAGATGCTTCAAAAAAATGGCGTCAGGTTCGGGACCGGT
ACACCTTCCTGGAGTCGGCGCATGGTCACACTGCTACTGACGATCGCCCC
TTTCTTGTACTTGGCATTGGTCTATCGAATGATGAACAAACTCTATAACC
CTACAGATAGCGTTGGTAGGGAGCGAAAAAATCTTCAGCAGAAACCAAAA
AAACGTGTCATCACATTCAAGGATGTTGCCGGCATCGATGCAGCCAAATT
GGAGTTGGTGGAAGTAGTTAATTTCTTGAGAGACCGAGCCCGGTATGACG
CCATTGGCGCCCGTCTGCCAAAAGGTATACTACTATCAGGAGCTCCAGGC
ACTGGCAAGACCTTGTTGGCTCGGGCTGTTGCGAATGAGGCGGGCGTGTC
ATTCATAAGTTGCTCTGCAAGTGAATTCTGCGAGCTCCTCGTTGGTCGAG
GCGCTGCCCGCATGCGCGACCTCTTCCAGCGTGGCTTCTCAAGCTCTCCT
TGCATAATTTTCATTGATGAACTGGATGCGTTGGCGAAAACACGCGgttc
cttttcttcaaatGATGAGCGGGAGCAGACGTTAAATCAGCTTTTATGTG
AAATGGATGGTTTTGAGGGTGGAGAAAATTGTGTCCTGGTCATCGCAGCT
ACAAATCGTCCCGAGGTGCTTGATCCAGCCCTTATACGACCAGGTCGCTT
CGACCGCCATATTGCGGTGGGTCTGCCAGACACACGCGGTCGCCGGGCCA
TCCTGGACGTTCATTCACGTCACGTTTGCCTGGCACCTGGCGTAGACATG
CAGCGCATTGCCACCAGGTCCAAAGGATACTCTGGAGCAGAACTAAGTAA
TGTGGTCAACGAAGCCGCCCTTCTCGCCGTGCGAGCAGGCTTAGGGGTAA
CAACACAGGCGTGCTTTGAGGAAGCCCTGGAGCGCAACAATCAATCGCGG
ATATTGGCCTTGCAATTAGACGGGTTTGGCAACGGCGACATGGGCGTCAA
CTCTACTGTACAAGACCTCCATAACAAATTGCAGAACCGCAATAGGACAA
ACCTTCAGGATCCATGACAAGAACTCGAGATTGTTGTACATTCTGAGATA
ATATCTCTTGAAGCTCTGAAGGAATTCAAATGGCTATTGTTAT

Coding sequence (CDS) from alignment at CM002461.1:563178..564770+

>rna3504 ID=rna3504|Name=rna3504|organism=Nannochloropsis gaditana|type=CDS|length=1407bp|location=Sequence derived from alignment at CM002461.1:563178..564770+ (Nannochloropsis gaditana)
ATGGCCAACGCCCTTTCGCCTAGGGGCCAAATCTCTACCATGTCGTCacc
atccttttcttcttcccggaGCTGGATGATTTCATCAATACTCACGAAGC
TACTTGGAATAACTAAGTACTTGTGGCCTCGTGCACCAGTCTATCTGCCT
TTTTCCGATTTTGTGAAGCATGCACAGGAGGGCAAATTGGCTTCCGTGAT
GATGAATCAAGACAAATTTGAGGTTCAAATGAAGGCGGGAGACAGTATCA
TGTTGGCTGGAGGCGCCAGCCTCGTGCCCTCTTCAAAAGTGTCCCGACAG
CAAATATACCACACATCTGTCATCCCGCAACTCGACAGACAATGGATTGT
CGAGATGCTTCAAAAAAATGGCGTCAGGTTCGGGACCGGTACACCTTCCT
GGAGTCGGCGCATGGTCACACTGCTACTGACGATCGCCCCTTTCTTGTAC
TTGGCATTGGTCTATCGAATGATGAACAAACTCTATAACCCTACAGATAG
CGTTGGTAGGGAGCGAAAAAATCTTCAGCAGAAACCAAAAAAACGTGTCA
TCACATTCAAGGATGTTGCCGGCATCGATGCAGCCAAATTGGAGTTGGTG
GAAGTAGTTAATTTCTTGAGAGACCGAGCCCGGTATGACGCCATTGGCGC
CCGTCTGCCAAAAGGTATACTACTATCAGGAGCTCCAGGCACTGGCAAGA
CCTTGTTGGCTCGGGCTGTTGCGAATGAGGCGGGCGTGTCATTCATAAGT
TGCTCTGCAAGTGAATTCTGCGAGCTCCTCGTTGGTCGAGGCGCTGCCCG
CATGCGCGACCTCTTCCAGCGTGGCTTCTCAAGCTCTCCTTGCATAATTT
TCATTGATGAACTGGATGCGTTGGCGAAAACACGCGgttccttttcttca
aatGATGAGCGGGAGCAGACGTTAAATCAGCTTTTATGTGAAATGGATGG
TTTTGAGGGTGGAGAAAATTGTGTCCTGGTCATCGCAGCTACAAATCGTC
CCGAGGTGCTTGATCCAGCCCTTATACGACCAGGTCGCTTCGACCGCCAT
ATTGCGGTGGGTCTGCCAGACACACGCGGTCGCCGGGCCATCCTGGACGT
TCATTCACGTCACGTTTGCCTGGCACCTGGCGTAGACATGCAGCGCATTG
CCACCAGGTCCAAAGGATACTCTGGAGCAGAACTAAGTAATGTGGTCAAC
GAAGCCGCCCTTCTCGCCGTGCGAGCAGGCTTAGGGGTAACAACACAGGC
GTGCTTTGAGGAAGCCCTGGAGCGCAACAATCAATCGCGGATATTGGCCT
TGCAATTAGACGGGTTTGGCAACGGCGACATGGGCGTCAACTCTACTGTA
CAAGACCTCCATAACAAATTGCAGAACCGCAATAGGACAAACCTTCAGGA
TCCATGA

Synonyms

Publications