rna3501, rna3501 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3501
Unique Name	rna3501
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2702
Alignment location	CM002461.1:554443..557100 +

Link to JBrowse

Properties


Property Name	Value
Product	adenylosuccinate lyase
Orig transcript id	gnl\|cribi\|Naga_100010g59.6135.mrna
Orig protein id	gnl\|cribi\|Naga_100010g59.6135
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:554443..557100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g59	gene3372	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3501	rna3501-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27165.1	cds3492	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:554443..557100+
coding sequence from alignment at CM002461.1:554443..557100+

mRNA sequence

>rna3501 ID=rna3501|Name=rna3501|organism=Nannochloropsis gaditana|type=mRNA|length=2702bp
TCTCGGAGGTTCGTTGACTATTGTCGGTGCTTTTCGAGGCCCTCGAGTCG
AGGGCCGCGGAGGCCGAAGGGCCGACGGACCGACGAAAAAGGCTTTATAA
ACACCAGCTGTCCGTATGACAAGCACGTCGGCGTGATACCCCCCCGGCAT
AAACCGAGAACGCAATGCCGCATGACTTTCGGAAAATTCGATGTGGGTGA
AGCCAGCTCCGAGCAGTCCTTGCACGACAAACCCGCCAGTACTCGCGGTA
AGAATCTTTCCCAGACCATCCTGTGGATGAAAGACAAATAAAGTGGAAGT
GTTCGCGGTGCTTGGCTCGTGAGGAACTGATCTAGATGCTAAGCTGGGGT
ACGTGCCAGGCCGAGCCGAGCCGCAATACCATCCTGCGGTAATGCATCCA
GGGGAATATAGACTTTTCTCGGGGAAGAAGGTGTTGTCAGAGTTCTACCT
ATTTGGCATTTCTCTGTGCCTTTCTTCTCCCTGTGGGTACCGTCAACCTA
CAAGGACCTATACTTATAGCTACGGGGCGGGTGGCACGAGAGGGTGGGAC
TCCTGCCAATAGGTCTGTGTGACATGGGTCTGTTTGCGACACGCGCGCAC
CGTTTCTCGTGCGTAAGCACAGAATGTGTGCCGCGTGCAAACATCTTCAG
AGGGATTCATGTCGGCAGAGGGCGTTGACTTGCTTTCGTTGGCAAGCTTC
TGGTTATTTGTTGAGGAGATGTGTTTATCCTCAAGTGTTTACTTATATGT
GGACTACAATGGATCAACGAAGGACTAGCGTATCAAGAATCAAGAGATGC
GCTCCTATGACCGTTCCATGCGAGGAGCTGGACTATAGTTTTACCTATTT
GGTATTTCTCTGTGCCTTTCTTTTCCCTGTGGGTACCGTCAACCTAGAAG
GACCTATACTTACAGCTACGGGACGGGTGGCACGAGAGGGTGGAACTCCT
GCCAGTAGGTCTGTGCGACCTGGATCTGTTTGCAACATGCACAAAATACA
TATCTTCGTAGCGTTGTTGAGGCAGCACTGGATGTGATGGTGCATCCAGT
GCTGCCTTCGGGGCCTCCCCCCCTACAATCTATTATCTTGGGGCTCTCCG
AGTGTGATTATGGACTTGTAGGGCAAGACTGCGGCAGATGTGAAGTGTAG
ATACCACAGTGCAAAAAGTGCTCAATTTGAACACTTGTTTAGTAGGCGGC
CGTCGCGAGGAAGGGAGGAAGTTGTTAATGACTTGACGTGGATCGGGACC
AGTAATGTTAGTGCGTTCCATGTAAACGCAGGAGAATAATAATGAGATTG
ATGAATGTAAGGCTAAGAGACTGGACAGACCTGCGGAGCCAATTAACAAG
GAAAGCAGCAAAACGTGGGAGCCCAGCGCGCGCTGCCACCGCAGTCGCTG
GCAGCGGAAGAAGGCAAAAAAGCAGGATTAAACCTTGAGATAGGATATGG
AGACAAGAGAGCAAGTTAAGAGGACGAATCAAGAATATGCAAAAGAACGA
CAACACGAATGACAACGTGACGCCAATAGACGAAGAGATAAAAAGGATAG
AGCGACGTGGCCGAGAGACAAAAAAGCAAATATTTGATATCTAAGGCTTT
CAAGCGATTATCGCAATGTGGCCCTATAAAATCGCCGTCCTCTTTCCGAT
GATTAGGTACGGGTTGATCATCGATGACATAAAACTTTAAGTCCCCCAAA
CATATATCTCGTCTCTCTGGTTCAGGAACATGCTGGCTGTAAGCCATGAG
CACCACCAACGTCGAGCTTGAAGGCATTTAAGGAAACGACAATTCTTATT
TTAGAACTTATTCTCCAGCATTTTTTGGGGGAAAAGATGAGATAGCGGCA
ATCGGCGCCTTCCGGCTTCGCCTGCAAGGAACTCTCATTGAACGGCTGGC
AAAATTGACGAATAGCCTAATCTTCATTGTGAGACATTATGGGCAACGCC
CGCAGCGTCACGCACGAAGCTAACGTGCGTCCTTACATTGAATACATATC
TGCAAGACGCGGCGAGGCAATCGAAGGAAACCCCTCTTGTGGACCACCTA
GCCCTAAAAAAAAAGCAAGCGGTGGGACTACCAACATAATCGCTGCAACA
ATAGCTCCTTCATAGCCACAGAAGCCAGAGCAGAATATATATAAGTGAAA
ACCAGATATGTCCCAGCACTTAATTGTGGCGCAGGGATATTGTTCTTCCG
AGCTTCTATGCTCATTTTCGTGTACGAAGGGGGATAGAATAAATTATCCT
TAGTCTATCCGATCGTAGCATCGCCAAAATGATGTAACCGGGCTTGGAAA
AAGTCAACATAGTATTTCTCATGTGTTGCCAAGGGCAGGACTCAAGCTCT
TCGTGCGTCCAGCCTCGGACAATCTCGATATAGCTCAGGCGACAGGGACT
CAGGTATAACTTCTCGTGCCAGCATAAGAGTTGATGCCATATTTGGCCTA
CGCAGCTTCGAGACCGTAAAGAGGTATATATCTGGGCGAAAGAGAGAGCT
ATTTTCGCATATTGCACAACTTGGACAGGCGTGCCACAAAACGTCTCAAT
AAAATTCAACGAAAGCCTTCCTCGGAACATCAGAAAAGGTTGTGAGGATC
TTTAACGTCTGATTGACAGATATAATTCATTCCGCGGGGAAATAATTACT
GAATGCTACGCGAGGAAGACTTTATTCTTGCCAGTTTTTCTTCCTTCTCA
TC

protein sequence of rna3501

>rna3501-protein ID=rna3501-protein|Name=rna3501|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MLKLPIANCANSCEYRMGDLTNDVLTGISSFNRDHCRRLTTPTGASNPRC
FDSARLAPTMSRDELVRETRMYEHPLVKRYATREMSYIWSPEKKFSTWRR
LWIALAKAEQELGIPITDEQIAQMEEHIMDIDFDRAEEKEAETRHDVMAH
VYTFGECCPAAQGIIHMGATSCFVGDNTDIVQLKEGMELLQRKIVKLLDQ
MKTFALEHRAHATLGFTHYQAAQLTTVGKRMTLYMQDFLMDLEHLDREME
DLPLRGLKGTTGTQATFLELFGGDHAKVKECNRKVCEYMGFKKWIAVSGQ
TYTRKIDYHILSILSGVAQSAYKMCGDIRLLANLKEIEEPFGKDQIGSSA
MAYKRNPMRSERVCSLARYVMSLPAAAAQTHATQWFERTLDDSSIRRIIL
PEAFLAVDVILNIVANITDGLQVWPQVIRAHVMAELPFMATEKILMACCK
KGGDRQVLHHAIRAHSMEAGKVVKAEGKANDLLERVRLDPLFAAIHEELE
DLVDPMLFVGRAPEQVDEFMVSEIVPMLNKHHKLLMIDNQDGVSV

mRNA from alignment at CM002461.1:554443..557100+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3501 ID=rna3501|Name=rna3501|organism=Nannochloropsis gaditana|type=mRNA|length=2658bp|location=Sequence derived from alignment at CM002461.1:554443..557100+ (Nannochloropsis gaditana)
TAGGTTGACGGTACccacagggagaagaaaggcacagAGAAATGCCAAAT
AGGTAGAACTCTGAcaacaccttcttccccgagaAAAGTCTATATTCCCC
TGGATGCATTACCGCAGGATGGTATTGCGGCTCGGCTCGGCCTGGCACGT
ACCCCAGCTTAGCATCTAGATCAGTTCCTCACGAGCCAAGCACCGCGAAC
ACTTCCACTTTATTTGTCTTTCATCCACAGGATGGTCTGGGAAAGATTCT
TACCGCGAGTACTGGCGGGTTTGTCGTGCAAGGACTGCTCGGAGCTGGCT
TCACCCACATCGAATTTTCCGAAAGTCATGCGGCATTGCGTTCTCGGTTT
ATGCCGGGGGGGTATCACGCCGACGTGCTTGTCATACGGACAGCTGGTGT
TTATAAAGCCTTTTTCGTCGGTCCGTCGGCCCTTCGGCCTCCGCGGCCCT
CGACTCGAGGGCCTCGAAAAGCACCGACAATAGTCAACGAACCTCCGAGA
CGGAGACGACCAGGAGGTCAGCGACAGCGCGACAGCGAGCTTGTCGTAAG
CAGCGTCTATGCTTCACCAGGAAATATGAGTATCCATAGCCaagtcatcc
tcctcaatgTTTCCGGAAAGTGCCGAGTTAAAGCAAAGATATTCAGCAAG
CCAGACGAAAAGATGATGGTCTTGTAGCCTGTTGAAATGGAACTTACCCG
CTGCGCCCATGCACTTGGCTACAGATGTTAAAATTGCCGATTGCAAACTG
TGCGAACTCATGTGAATATCGCATGGGTGACTTGACAAATGACGTGCTAA
CTGGAATTTCTTCTTTTAATCGTGATCACTGTCGCAGGTTGACGACACCT
ACAGGAGCATCTAACCCTCGTTGCTTCGATTCCGCCAGACTCGCTCCGAC
CATGTCCAGGGATGAATTGGTGCGGGAAACCAGAATGTACGAGCATCCAC
TTGTTAAACGTTACGCAACTAGAGAGATGAGCTATATATGGTCTCCGGAA
AAGAAGTTTTCCACCTGGCGGAGACTGTGGATCGCGCTTGCTAAGGCTGA
ACAAGAGCTTGGCATTCCCATCACTGACGAACAGATAGCACAAATGGAGG
AGCACATTATGGACATTGATTTTGACCGGgctgaggagaaagaagcagag
aCCCGACATGACGTCATGGCGCATGTGTACACTTTTGGAGAGTGCTGCCC
TGCAGCCCAAGGTATCATCCACATGGGCGCAACAAGCTGCTTTGTCGGAG
ATAACACAGATATTGTGcaattgaaggagggaatggagctGTTGCAGCGG
AAGATAGTCAAGCTTTTGGATCAGATGAAGACTTTTGCACTTGAGCATCG
TGCACATGCCACTCTGGGCTTCACTCACTATCAGGCCGCACAGCTTACCA
CGGTGGGGAAACGCATGACACTTTACATGCAAGATTTTTTAATGGACCTC
GAGCATCTCGATCGAGAAATGGAAGATTTGCCTTTACGGGGCCTTAAGGG
TACAACAGGCACACAGGCCACCTTCCTAGAACTTTTCGGGGGGGACCACG
CCAAAGTCAAGGAATGCAATCGGAAAGTTTGCGAATACATGGGCTTCAAG
AAGTGGATTGCGGTTTCGGGTCAGACGTACACGCGTAAGATTGATTATCA
CATCCTTTCGATATTATCTGGAGTCGCTCAATCCGCGTATAAAATGTGTG
GTGATATTCGATTGCTGGCGAATTTGAAAGAGATAGAAGAGCCATTCGGG
AAGGACCAGATCGGCTCCAGTGCCATGGCATACAAACGCAACCCCATGCG
CTCAGAGCGTGTCTGCTCCCTGGCTCGATATGTGATGAGTTTGCCCGCCG
CGGCTGCTCAGACACATGCAACGCAGTGGTTCGAACGCACACTTGACGAC
TCCAGCATTCGGCGCATTATTTTGCCCGAGGCCTTCCTGGCCGTTGATGT
TATCCTAAACATAGTTGCGAACATAACGGACGGCCTGCAGGTCTGGCCGC
AAGTCATTCGAGCGCATGTGATGGCAGAATTGCCTTTTATGGCTACTGAG
AAGATCCTAATGGCCTGCTGCAAGAAGGGCGGAGACCGACAGGTATTGCA
TCACGCCATTCGGGCCCACTCCATGGAAGCAGGCAAAGTAGTCAAGGCTG
AGGGTAAAGCCAACGATTTGCTCGAGCGTGTTCGGCTGGATCCACTTTTT
GCCGCTATTCATGAGGAGCTTGAAGACCTCGTTGATCCCATGCTTTTCGT
CGGCCGCGCCCCTGAACAGGTTGATGAGTTCATGGTCTCGGAGATAGTTC
CCATGCTGAATAAGCACCACAAACTCCTGATGATAGACAATCAAGATGGT
GTAAGTGTCTAGTGGAATCACTCTGTGTCCATCGCTTCATGTCAATAGAT
GGTGCCGCAGAAAGTCAGATTTTTTTGGAGCCAGGTTTCCAGGGGGGGTC
GAAAGGGTCCGAAAGGTTGATTTTTACAAAACATGAAGGACAGATCAATG
AAGTTATTCAACAATAAATTGTGGAGGTCAACTATGATGCTCTTTTGTAC
CTTATTTTCCCCCATTTTCTCAAATTGTTACTACGCTGTAGTCGTGTAAG
TCCAACGATCGGTGCAAAACAATCCGGAGAAACATGAACGAAGAGAAACC
TTCGCAAA

Coding sequence (CDS) from alignment at CM002461.1:554443..557100+

>rna3501 ID=rna3501|Name=rna3501|organism=Nannochloropsis gaditana|type=CDS|length=1638bp|location=Sequence derived from alignment at CM002461.1:554443..557100+ (Nannochloropsis gaditana)
ATGTTAAAATTGCCGATTGCAAACTGTGCGAACTCATGTGAATATCGCAT
GGGTGACTTGACAAATGACGTGCTAACTGGAATTTCTTCTTTTAATCGTG
ATCACTGTCGCAGGTTGACGACACCTACAGGAGCATCTAACCCTCGTTGC
TTCGATTCCGCCAGACTCGCTCCGACCATGTCCAGGGATGAATTGGTGCG
GGAAACCAGAATGTACGAGCATCCACTTGTTAAACGTTACGCAACTAGAG
AGATGAGCTATATATGGTCTCCGGAAAAGAAGTTTTCCACCTGGCGGAGA
CTGTGGATCGCGCTTGCTAAGGCTGAACAAGAGCTTGGCATTCCCATCAC
TGACGAACAGATAGCACAAATGGAGGAGCACATTATGGACATTGATTTTG
ACCGGgctgaggagaaagaagcagagaCCCGACATGACGTCATGGCGCAT
GTGTACACTTTTGGAGAGTGCTGCCCTGCAGCCCAAGGTATCATCCACAT
GGGCGCAACAAGCTGCTTTGTCGGAGATAACACAGATATTGTGcaattga
aggagggaatggagctGTTGCAGCGGAAGATAGTCAAGCTTTTGGATCAG
ATGAAGACTTTTGCACTTGAGCATCGTGCACATGCCACTCTGGGCTTCAC
TCACTATCAGGCCGCACAGCTTACCACGGTGGGGAAACGCATGACACTTT
ACATGCAAGATTTTTTAATGGACCTCGAGCATCTCGATCGAGAAATGGAA
GATTTGCCTTTACGGGGCCTTAAGGGTACAACAGGCACACAGGCCACCTT
CCTAGAACTTTTCGGGGGGGACCACGCCAAAGTCAAGGAATGCAATCGGA
AAGTTTGCGAATACATGGGCTTCAAGAAGTGGATTGCGGTTTCGGGTCAG
ACGTACACGCGTAAGATTGATTATCACATCCTTTCGATATTATCTGGAGT
CGCTCAATCCGCGTATAAAATGTGTGGTGATATTCGATTGCTGGCGAATT
TGAAAGAGATAGAAGAGCCATTCGGGAAGGACCAGATCGGCTCCAGTGCC
ATGGCATACAAACGCAACCCCATGCGCTCAGAGCGTGTCTGCTCCCTGGC
TCGATATGTGATGAGTTTGCCCGCCGCGGCTGCTCAGACACATGCAACGC
AGTGGTTCGAACGCACACTTGACGACTCCAGCATTCGGCGCATTATTTTG
CCCGAGGCCTTCCTGGCCGTTGATGTTATCCTAAACATAGTTGCGAACAT
AACGGACGGCCTGCAGGTCTGGCCGCAAGTCATTCGAGCGCATGTGATGG
CAGAATTGCCTTTTATGGCTACTGAGAAGATCCTAATGGCCTGCTGCAAG
AAGGGCGGAGACCGACAGGTATTGCATCACGCCATTCGGGCCCACTCCAT
GGAAGCAGGCAAAGTAGTCAAGGCTGAGGGTAAAGCCAACGATTTGCTCG
AGCGTGTTCGGCTGGATCCACTTTTTGCCGCTATTCATGAGGAGCTTGAA
GACCTCGTTGATCCCATGCTTTTCGTCGGCCGCGCCCCTGAACAGGTTGA
TGAGTTCATGGTCTCGGAGATAGTTCCCATGCTGAATAAGCACCACAAAC
TCCTGATGATAGACAATCAAGATGGTGTAAGTGTCTAG

Synonyms

Publications