|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100010g57.6130.mrna |
| Orig protein id | gnl|cribi|Naga_100010g57.6130 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:552241..554942 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3500 ID=rna3500|Name=rna3500|organism=Nannochloropsis gaditana|type=mRNA|length=823bp
GTCGAGAGGCGCGGGAAAAAGCGAAGAGACTGTCAAGTCTTCCCAGCTCA
TGGTAGAGTGAAACCAAATTGGACTGATACTTTTTAAATTGTAAAACACG
TTTAAGACGGAGGATAAACGTCTGCTTTTGGTTTTCGAAAGGATAGCAGA
TAATGGACGGTAGGGCCATCTCTTAGAACAACTTCATTGTGAATGACGAT
TACTTCTTCTATTGTGAAGTTTATAGCTTCTGTCCGGCTCGTGATCAGCA
ATTTGTACGGAAGAATTACCTGCTACTCTCCAACTCTTGCTCTGCATAAT
GGAATAACGACCTTGTTTACGTGCACTGCCCTCGAAATTTCTACTATACG
GGGAAGCTACAAAATCGGATCAATGAAATTGAGCCTTTCTCGCGCGCGCA
CACACACATGCATCGCACACACGCGCTACACGAACAACGCACATTTATTT
ATTTATGTATATGTGGGATATGAAGGCAAGTACGACAACACTTTGTAAAT
GAGAGTTTAGCAAGTTGGTCCTGAGATAAGCAAGTGGCCAAGCTAGAGGT
ATAGATTAGCCGATATCACTTCATCCCATTAGATAAGCTGTGATTTGTTA
CGTTTTCTCGACTAACGACCAGTCCATCGTCAATCGGCCAAACTCCTGTA
AGACAGAAAGTTCACGGGGCTTACAAAAATTCGAACGCTTTCTGCGAATG
TCGATAGGGAGATGGCTTTGTGTGCATTTTTTAGAGAAGATGAGAAGGAA
GAAAAACTGGCAAGAATAAAGTCTTCCTCGCGTAGCATTCAGTAATTATT
TCCCCGCGGAATGAATTATATCT back to topprotein sequence of rna3500 >rna3500-protein ID=rna3500-protein|Name=rna3500|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MCAACKHLQRDSCRQRALTCFRWQASGYLLRRCVYPQVFTYMWTTMDQRR
TSVSRIKRCAPMTVPCEELDYSFTYLVFLCAFLFPVGTVNLEGPILTATG
RVAREGGTPASRSVRPGSVCNMHKIHIFVALLRQHWM back to topmRNA from alignment at CM002461.1:552241..554942- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3500 ID=rna3500|Name=rna3500|organism=Nannochloropsis gaditana|type=mRNA|length=2702bp|location=Sequence derived from alignment at CM002461.1:552241..554942- (Nannochloropsis gaditana)
TCTCGGAGGTTCGTTGACTATTGTCGGTGCTTTTCGAGGCCCTCGAGTCG
AGGGCCGCGGAGGCCGAAGGGCCGACGGACCGACGAAAAAGGCTTTATAA
ACACCAGCTGTCCGTATGACAAGCACGTCGGCGTGATACCCCCCCGGCAT
AAACCGAGAACGCAATGCCGCATGACTTTCGGAAAATTCGATGTGGGTGA
AGCCAGCTCCGAGCAGTCCTTGCACGACAAACCCGCCAGTACTCGCGGTA
AGAATCTTTCCCAGACCATCCTGTGGATGAAAGACAAATAAAGTGGAAGT
GTTCGCGGTGCTTGGCTCGTGAGGAACTGATCTAGATGCTAAGCTGGGGT
ACGTGCCAGGCCGAGCCGAGCCGCAATACCATCCTGCGGTAATGCATCCA
GGGGAATATAGACTTTTCTCGGGGAAGAAGGTGTTGTCAGAGTTCTACCT
ATTTGGCATTTCTCTGTGCCTTTCTTCTCCCTGTGGGTACCGTCAACCTA
CAAGGACCTATACTTATAGCTACGGGGCGGGTGGCACGAGAGGGTGGGAC
TCCTGCCAATAGGTCTGTGTGACATGGGTCTGTTTGCGACACGCGCGCAC
CGTTTCTCGTGCGTAAGCACAGAATGTGTGCCGCGTGCAAACATCTTCAG
AGGGATTCATGTCGGCAGAGGGCGTTGACTTGCTTTCGTTGGCAAGCTTC
TGGTTATTTGTTGAGGAGATGTGTTTATCCTCAAGTGTTTACTTATATGT
GGACTACAATGGATCAACGAAGGACTAGCGTATCAAGAATCAAGAGATGC
GCTCCTATGACCGTTCCATGCGAGGAGCTGGACTATAGTTTTACCTATTT
GGTATTTCTCTGTGCCTTTCTTTTCCCTGTGGGTACCGTCAACCTAGAAG
GACCTATACTTACAGCTACGGGACGGGTGGCACGAGAGGGTGGAACTCCT
GCCAGTAGGTCTGTGCGACCTGGATCTGTTTGCAACATGCACAAAATACA
TATCTTCGTAGCGTTGTTGAGGCAGCACTGGATGTGATGGTGCATCCAGT
GCTGCCTTCGGGGCCTCCCCCCCTACAATCTATTATCTTGGGGCTCTCCG
AGTGTGATTATGGACTTGTAGGGCAAGACTGCGGCAGATGTGAAGTGTAG
ATACCACAGTGCAAAAAGTGCTCAATTTGAACACTTGTTTAGTAGGCGGC
CGTCGCGAGGAAGGGAGGAAGTTGTTAATGACTTGACGTGGATCGGGACC
AGTAATGTTAGTGCGTTCCATGTAAACGCAGGAGAATAATAATGAGATTG
ATGAATGTAAGGCTAAGAGACTGGACAGACCTGCGGAGCCAATTAACAAG
GAAAGCAGCAAAACGTGGGAGCCCAGCGCGCGCTGCCACCGCAGTCGCTG
GCAGCGGAAGAAGGCAAAAAAGCAGGATTAAACCTTGAGATAGGATATGG
AGACAAGAGAGCAAGTTAAGAGGACGAATCAAGAATATGCAAAAGAACGA
CAACACGAATGACAACGTGACGCCAATAGACGAAGAGATAAAAAGGATAG
AGCGACGTGGCCGAGAGACAAAAAAGCAAATATTTGATATCTAAGGCTTT
CAAGCGATTATCGCAATGTGGCCCTATAAAATCGCCGTCCTCTTTCCGAT
GATTAGGTACGGGTTGATCATCGATGACATAAAACTTTAAGTCCCCCAAA
CATATATCTCGTCTCTCTGGTTCAGGAACATGCTGGCTGTAAGCCATGAG
CACCACCAACGTCGAGCTTGAAGGCATTTAAGGAAACGACAATTCTTATT
TTAGAACTTATTCTCCAGCATTTTTTGGGGGAAAAGATGAGATAGCGGCA
ATCGGCGCCTTCCGGCTTCGCCTGCAAGGAACTCTCATTGAACGGCTGGC
AAAATTGACGAATAGCCTAATCTTCATTGTGAGACATTATGGGCAACGCC
CGCAGCGTCACGCACGAAGCTAACGTGCGTCCTTACATTGAATACATATC
TGCAAGACGCGGCGAGGCAATCGAAGGAAACCCCTCTTGTGGACCACCTA
GCCCTAAAAAAAAAGCAAGCGGTGGGACTACCAACATAATCGCTGCAACA
ATAGCTCCTTCATAGCCACAGAAGCCAGAGCAGAATATATATAAGTGAAA
ACCAGATATGTCCCAGCACTTAATTGTGGCGCAGGGATATTGTTCTTCCG
AGCTTCTATGCTCATTTTCGTGTACGAAGGGGGATAGAATAAATTATCCT
TAGTCTATCCGATCGTAGCATCGCCAAAATGATGTAACCGGGCTTGGAAA
AAGTCAACATAGTATTTCTCATGTGTTGCCAAGGGCAGGACTCAAGCTCT
TCGTGCGTCCAGCCTCGGACAATCTCGATATAGCTCAGGCGACAGGGACT
CAGGTATAACTTCTCGTGCCAGCATAAGAGTTGATGCCATATTTGGCCTA
CGCAGCTTCGAGACCGTAAAGAGGTATATATCTGGGCGAAAGAGAGAGCT
ATTTTCGCATATTGCACAACTTGGACAGGCGTGCCACAAAACGTCTCAAT
AAAATTCAACGAAAGCCTTCCTCGGAACATCAGAAAAGGTTGTGAGGATC
TTTAACGTCTGATTGACAGATATAATTCATTCCGCGGGGAAATAATTACT
GAATGCTACGCGAGGAAGACTTTATTCTTGCCAGTTTTTCTTCCTTCTCA
TC back to topCoding sequence (CDS) from alignment at CM002461.1:552241..554942- >rna3500 ID=rna3500|Name=rna3500|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002461.1:552241..554942- (Nannochloropsis gaditana)
ATGTGTGCCGCGTGCAAACATCTTCAGAGGGATTCATGTCGGCAGAGGGC
GTTGACTTGCTTTCGTTGGCAAGCTTCTGGTTATTTGTTGAGGAGATGTG
TTTATCCTCAAGTGTTTACTTATATGTGGACTACAATGGATCAACGAAGG
ACTAGCGTATCAAGAATCAAGAGATGCGCTCCTATGACCGTTCCATGCGA
GGAGCTGGACTATAGTTTTACCTATTTGGTATTTCTCTGTGCCTTTCTTT
TCCCTGTGGGTACCGTCAACCTAGAAGGACCTATACTTACAGCTACGGGA
CGGGTGGCACGAGAGGGTGGAACTCCTGCCAGTAGGTCTGTGCGACCTGG
ATCTGTTTGCAACATGCACAAAATACATATCTTCGTAGCGTTGTTGAGGC
AGCACTGGATGTGA back to top
|