rna3497, rna3497 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3497
Unique Name	rna3497
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2714
Alignment location	CM002461.1:547123..548876 +

Link to JBrowse

Properties


Property Name	Value
Product	ATP-NAD kinase, PpnK-type, alpha/beta
Orig transcript id	gnl\|cribi\|Naga_100010g51.6168.mrna
Orig protein id	gnl\|cribi\|Naga_100010g51.6168
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:547123..548876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g51	gene3368	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3497	rna3497-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27198.1	cds3488	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:547123..548876+
coding sequence from alignment at CM002461.1:547123..548876+

mRNA sequence

>rna3497 ID=rna3497|Name=rna3497|organism=Nannochloropsis gaditana|type=mRNA|length=2714bp
GTCGGGAGGTTAGTTCAGGCTTGAGTACAAGATTTGCTTGGTATCGATGT
TGGCCGCTGTATTTCTCACTGGTCGTAAAGATCCTTCTAATCTGCACTTA
TCCGGAATACGTTCTGCAGGACTGAAAAAAAACTTTGTCGTTCGGTAAAG
TCATGAGCTCTGCGCTTGTATCTTCCTGCATTTCCGTCTGTCTACTCACA
CGTGTATCGACGCTCGTCGTACAGGTTTAAAAACGCCAGGCAGCGTGTAA
TGATGGATGGCCACGAGAATGATGGCTCTAGCATAGCAAGCGTTAGTGAT
GACAGCTCTATCAACGTTTGCGCGCGAGGCGATGAAGAATGGAACGACTG
GGTAGATGAGGGCCCTGATGAGGTTCCCACAAGATGTCTCCTTTCCGATA
CCGAGGAAATCTCTCCTGAGGCCGCTTTAGCTGCTGACCGAGTAATGGGC
CTTGATTTCTTTGGGCTGTTGAACAGCCATCAATTAGATTTGTACGGAGC
AATGAAGCTAATAAATTTTATCCGCACCCTCGCCAAGCGAGGTATTTCTG
CAGAGGACATCGTAGCTCGGGTTACGGACGCAGATAGTTTGATTGCTGCT
TTAAAAGACGAAATATATTTGCAGCCTATAATTCAGGAAGACCCTCTCTT
GTATGGACTTGGAAAGTTGCTCGAGGCGCGTGGTATGGATGACGCAGTTC
TTTCGCGAGAGGGAGATGGCCGAACAGGTGACGAGTCAAAAGATAAGGCA
TGTGGCAACATCACCATGGAGGCAGAAGGTCCAGATTCAAATCCTGAATT
TCTTATGCAAGAAAATGAAAGTTTACGCACAGACTTGAGGGAAGCACATG
CACGGCTGCGCCGGCTGAGCATGCTCATGGCGGCTGTTGACGACGACGTG
CGAGTGTCATCGACACCTCAGGCCCCAGACAATGACACATACTACTTCAG
ATCATATAACCACCATGCTATTCATGAGACCATGCTCAAAGATAGAGTGC
GTACACATGCCTATCGCGACGCAATTTTTCAGGCAGGTATGACTGGTAAG
GTGGTCCTGGATGTCGGTGCTGGTAGCGGTGTGCTTTCAATGTTCGCCGC
AAAAGCAGGGGCAGATCTAGTTTTTGGTGTGGACTGTAGTGAAATTGTGA
AACTGGCTAGAGCTATCGTCCAACTCAATGGTATGGGACACAAAGTTAAA
CTTATTCAAGGCAAGATCGAGGAGATAAGGCTCCCCGTGGCTGAAGTCGA
CGTAATTGTCTCAGAATGGATGGGCTACTGCCTCTTGTACGAGTCCATGT
TGCTGAGTGTATTGACAGCGCGTGACAAATATTTGCGTCCGGGCGGCTTG
ATGCTACCCAGCCGTTGCTCAATGGTTATTCAGGGAGTAAGCGACGTGGA
GCGCCGACTGAGCTGGTGGTCGGACGTGTACGGCTTGGATATGAGCCCTC
TTCGGGCCGCGGTCATGTCTGAGCCGGCTGTGGAAAGTGTATATCAAGAG
GCAATACTTACTGACGCTTTCATCTTCAAAGATTTTGATCTCTACACTGT
GAAAGCACGGGACCTTGATTTCGAGGCCGACTTCGTGCTGGATGTTCAAG
CTTCGCAAATCGAACCTTTACCCTTATGCGGCTTGGTGGTCTCCTTTGAC
ACTTTCTTCGAAAACCTACTGGGTCAGCAAGTTGTAAGTTTCTCCACGCG
ACCCGAGTCAAACGATACTCACTGGCATCAGACGCTTTTCTGGTTGTCGG
GAGCACCAAACGAGGTGCTTACGGAGGGTGACACCATAAAGGGAAATATA
GGCTTTAGACGGACATCAACTAACCATCGTGAGTATGATGTACATATCTC
GTGGGAGGTGCGGCGAAACATGGGAAGCTTGTTACTTGGAAACGGGCAAC
AAAGCTTTACGCTAGGAAGCTGAGCCCAAGAGGAGTTGTCTCGGTAAGAT
TTCTGATTATCAAAAGTTGAGAAATTTTCAGATGGCTACATAGCAAAAGT
CTGTAAGTGCTAATAAATGCTCTATACGATCAGAGAATCGGGTTTCTATT
TCACGTGTCAAAGTTCTTTTCGATGATATCAGTAGCGTTTGCAATCATTT
GACGGTACGCGAATTTCCTTCCTCTCACTTCATTCACGGTTTTGTGAAGC
TAGCCATATGTGCGTGAGTGACGTTACTAAAATTGCGGAGGAGAATGTGT
GACGTGTGCCATTACAGTACTGGCATAAGTAGCCTGATGTTCCATGTCAC
TTGGCAAATTGGATTGCTATGACGAAGACTCCCAAACTACATGTATCATG
TCCATGACTTTTTGAAACTCCGCTATCGCAACGCCTCGTACTCCTTGTTT
GCCTGTGTGTGATCATGCGTTTTTGCAAATCGTATTTGAAGCGACTAGAG
GAGTTATAGCGCCGGCGGCCGCATGCTGCCCTGAATGAAGAAAGCCAGTA
GTGGGCTTTATGAGATCGAGTCCGCGCTGGATTCGAAGACGCTTTAACTC
GGATTTAATGTCCGCAATTTCTTGTTGAGTCTGCATGAGGGAAGTACGCA
ACATCCGGTTTTCATTCGCCGTGTCATGGTTTATAGCCTTCAGCTCCTTC
ACAACAGCGTAAAGATGCTCGCTTTCCCGTTGTGTTTCTGACGCAAAATG
GAAGAGCTGCTCAGAGGTGAACCCCCGCGTAATCACACATTTAAAAAGAG
AGAAGATGTCCAGA

protein sequence of rna3497

>rna3497-protein ID=rna3497-protein|Name=rna3497|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MGVGHFRRLLLVVKHTPYEMYLQMKSQGKAPLALRWERLKHRHQVHKECV
QDLSDLLRRMDMDFSMVGREELDRQHLKNVDLVVAVGGDGTVLSCSHFLD
DTIPLLGVNSDPSRDDEKKVNKKLDERRSFGALCACTASNMFEVIPDILH
GQNQAGRRTRIQTVVRDALKETKLPPALNDILVAHPIPAAVSRFRLGFLN
SAGDETSHFNVWSSGLWISTATGSSAAMTAAGGVLMDLKSSELQYMVREH
LLEAGGEHLEKEGHGMLQPGNTLQMRWNSQHGCVYVDGSHVRHNLQLGDT
VSLSADAPPIWLFEKPEGISGPTQ

mRNA from alignment at CM002461.1:547123..548876+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3497 ID=rna3497|Name=rna3497|organism=Nannochloropsis gaditana|type=mRNA|length=1754bp|location=Sequence derived from alignment at CM002461.1:547123..548876+ (Nannochloropsis gaditana)
GAGTAGACAGACGGAAATGCAGGAAGATACAAGCGCAGAGCTCATGACTT
TACCGAACGACAAAGTTTTTTTTCAGTCCTGCAGAACGTATTCCGGATAA
GTGCAGATTAGAAGGATCTTTACGACCAGTGAGAAATACAGCGGCCAACA
TCGATACCAAGCAAATCTTGTACTCAAGCCTGAACTAACCTCCCGACCCC
CAGCATCGATGCATCTGGCTCATCGCTCATGCGCCGTGGCTACGTACACG
CTCGCACCATAATGCCGACCTGATATTACTTTCTGCATGCAAGGCCCTCT
TAAATATACATTCTGCGTGCGCATTCGCTGACAGATTCAACTCTTAGCAC
CAGCGAGCAGGTTGGGCATCCTCTTAGTTTTGGGGGCCTCAAGCGCTAGA
GGAGAAACCCGCCTTATTCCCTACCGTCGTGGGATGGGGGTTGGCCACTT
TAGAAGGCTTTTACTTGTTGTAAAACATACGCCTTATGAAATGTATTTGC
AAATGAAGTCTCAAGGCAAGGCACCGCTGGCATTACGATGGGAGCGCTTA
AAGCATCGTCATCAAGTCCATAAGGAATGTGTCCAGGATTTGAGCGATCT
GCTGCGCCGCATGGATATGGACTTCTCTATGGTTGGACGAGAAGAATTGG
ACCGACAGCACCTGAAAAACGTTGACTTGGTGGTTGCGGTTGGTGGGGAT
GGTACAGTACTATCTTGCTCTCATTTTTTGGATGATACAATCCCCCTACT
TGGCGTAAACAGCGACCCTTCCCGGGACGACGAGAAAAAGGTCAATAAAA
AGCTCGATGAACGTCGAAGCTTTGGAGCCCTTTGCGCATGTACAGCGTCT
AATATGTTTGAGGTCATTCCTGACATACTTCATGGGCAGAATCAAGCGGG
CAGGCGGACACGCATACAAACCGTTGTGCGCGATGCTTTGAAAGAGACTA
AGCTACCTCCGGCCTTAAACGATATTCTCGTTGCTCATCCTATTCCTGCC
GCCGTTTCTCGTTTTCGCTTAGGATTCTTGAACAGTGCAGGAGATGAAAC
GTCCCATTTTAATGTATGGTCCAGCGGTCTTTGGATCTCGACTGCTACCG
GCTCCTCTGCAGCCATGACAGCAGCCGGTGGCGTGCTTATGGACCTGAAA
TCAAGCGAGTTGCAATATATGGTCCGTGAACACTTACTTGAGGCCGGTGG
AGAGCATCTAGAAAAGGAAGGTCATGGTATGCTCCAGCCAGGCAATACTT
TGCAAATGCGCTGGAATTCTCAGCATGGCTGCGTTTATGTTGATGGCAGC
CATGTGCGTCATAATTTACAATTGGGAGATACTGTTAGTTTGTCGGCGGA
TGCGCCTCCAATTTGGCTTTTTGAGAAGCCTGAAGGTATATCCGGACCGA
CACAGTGAAGAACTGAGAGCCTGTGGGGAGCTTGTTTTTGCGAAAGGAAT
TAAGGTTCTGACGAGATGTACGCTCATACACGGAAAGTCTCAATTTCCTC
CGCATACTTTATAAATTATCTTCAATCCAACCATGTGCTCCACAAATTTA
AAGGTGCTAATTACATTGTACCTTCAAAATCTCATACAAAGCATCTTTGC
ATGGAGTTTTTTTTAACAAAAATTTTCCAAATGACTGAGAGGGTTCCGTG
ATGCTGCGAATTGAATTTTTTGCCCTCCGAAATAAACGAGAGAAATCGCA
CAGAATTTTAGCTTTTCTGATAGAGGTTTTGAACTCAAGTAGAATGTCTC
TTCA

Coding sequence (CDS) from alignment at CM002461.1:547123..548876+

>rna3497 ID=rna3497|Name=rna3497|organism=Nannochloropsis gaditana|type=CDS|length=975bp|location=Sequence derived from alignment at CM002461.1:547123..548876+ (Nannochloropsis gaditana)
ATGGGGGTTGGCCACTTTAGAAGGCTTTTACTTGTTGTAAAACATACGCC
TTATGAAATGTATTTGCAAATGAAGTCTCAAGGCAAGGCACCGCTGGCAT
TACGATGGGAGCGCTTAAAGCATCGTCATCAAGTCCATAAGGAATGTGTC
CAGGATTTGAGCGATCTGCTGCGCCGCATGGATATGGACTTCTCTATGGT
TGGACGAGAAGAATTGGACCGACAGCACCTGAAAAACGTTGACTTGGTGG
TTGCGGTTGGTGGGGATGGTACAGTACTATCTTGCTCTCATTTTTTGGAT
GATACAATCCCCCTACTTGGCGTAAACAGCGACCCTTCCCGGGACGACGA
GAAAAAGGTCAATAAAAAGCTCGATGAACGTCGAAGCTTTGGAGCCCTTT
GCGCATGTACAGCGTCTAATATGTTTGAGGTCATTCCTGACATACTTCAT
GGGCAGAATCAAGCGGGCAGGCGGACACGCATACAAACCGTTGTGCGCGA
TGCTTTGAAAGAGACTAAGCTACCTCCGGCCTTAAACGATATTCTCGTTG
CTCATCCTATTCCTGCCGCCGTTTCTCGTTTTCGCTTAGGATTCTTGAAC
AGTGCAGGAGATGAAACGTCCCATTTTAATGTATGGTCCAGCGGTCTTTG
GATCTCGACTGCTACCGGCTCCTCTGCAGCCATGACAGCAGCCGGTGGCG
TGCTTATGGACCTGAAATCAAGCGAGTTGCAATATATGGTCCGTGAACAC
TTACTTGAGGCCGGTGGAGAGCATCTAGAAAAGGAAGGTCATGGTATGCT
CCAGCCAGGCAATACTTTGCAAATGCGCTGGAATTCTCAGCATGGCTGCG
TTTATGTTGATGGCAGCCATGTGCGTCATAATTTACAATTGGGAGATACT
GTTAGTTTGTCGGCGGATGCGCCTCCAATTTGGCTTTTTGAGAAGCCTGA
AGGTATATCCGGACCGACACAGTGA

Synonyms

Publications