rna3494, rna3494 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3494
Unique Name	rna3494
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1223
Alignment location	CM002461.1:539455..542322 -

Link to JBrowse

Properties


Property Name	Value
Product	clavaminate synthase-like protein
Orig transcript id	gnl\|cribi\|Naga_100010g48.6129.mrna
Orig protein id	gnl\|cribi\|Naga_100010g48.6129
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:539455..542322 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g48	gene3365	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3494	rna3494-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27159.1	cds3485	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:539455..542322-
coding sequence from alignment at CM002461.1:539455..542322-

mRNA sequence

>rna3494 ID=rna3494|Name=rna3494|organism=Nannochloropsis gaditana|type=mRNA|length=1223bp
AGTAGCACAATGTCACTCATGTGACAGGGCTTTCAAGGAGGGTGAGATCC
ATTTACTGAACGCATATCCCCTCCTGAGAAAGTCAACAACTTTGCACGAG
CACTTGTACATATGCCTCCTGCACTCTTGTTGTTTTTTCCAAGGACTAAG
CAAATTCTCCTCTCTCCCAATGCGTATGCTCATGTGCGTTTATAAACAAT
CATCTGCATTTCGATGGTTAAATTCAACTCTACAAATCTCAAACAGGCAC
GGGGGCACACTCAATTTTCATTCGATGTCTCAAGTACCCTGGACCCGAAT
TCGTGAGTTCAAAGAGGAGCAGGAAAGGAAAAAACGACATAAAGTGGAGT
CCGGACAAGAAGCTTCTCGGTCTCAACGTGACGTTCTTCAACATGAAACA
AGAAGTCAGGGTCAAGAGACGGAGGAGAACTCATTTCTGGGGCGTTTTAA
AGGAACTTATTTCAAGGAGCGCCTTCTCTTTGGTGGCGTGGTGGGCAGCG
TCACTGGCGCGTTTTTCGGAGGACTAGATGCAGTACAGGGTATTAAAAAG
GGTAAAGCCTTTGGCGTGGTGTTGAACAACTTTCAAGCTAAAGTAAAATT
TTCTGCCGAACACGTCGGCAGTGCTGCGGCTATCTTTTCCATGGCATAAA
ATACATAACGAAGGTGGCTCGAAGTGAATGTGATTGGGGAAATCCCGCCA
CAGCAGCTTTGTGTACCATACCACCTCTCCTGATCTCAACAGCGTTTCGT
CGCAATGTACCGTATGCCGTCCTATTGATTGGTATGGATGTTATCAGCGA
CGCGTCGTCATCGTCTCCTTCCAGTGGCACCCGTACGTCCTAAGCCATGC
ACGCGATGTCTTCTTTCGTGCGAATACCAGGAAATATAGTACAAGAATTT
CAAAGAAAAATTACGCGTGACAGGCCTTCCAGGGCAAAAAGACTCCCACA
CTCGTGGATTCGCACGTTTCATTCTTCAGATCACGGCCAATCTTGACTTA
GAGCTCCTCTCTCGGACCTTTTTTAAGTTCATCAAGAGGAGCACGCAAAG
CTTTAGCAAGGGAGGCTGTGACAATGCGTTTACCTGTAAATGGCCTCCGG
GAATGCATCACGGTGTGATTGTCAATCAATATGAAGTCACCCCGACACCA
TGGAAATGCCACTGCAAGCTCCTCCATTAGCCTACCAGCTACCGTTATGA
GGCTGGGATCAAGGTAGCTCCCG

protein sequence of rna3494

>rna3494-protein ID=rna3494-protein|Name=rna3494|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MHERITNCIPMLISVLSRFFPAASTGLAAPIMALIPTCKVVHCQLLLLLS
TILFLPLAVSFQSTDTLQSSQASFPEDGAVVSIRIPEQKVFDGIEFPLVL
GPNKKMNISEGTLQERLTKWVLASTPKLLDDLLLKHGAILFKGFHIDSPH
HFNDIVETFGFENFPYVGGAAVRRQLAPRVFTTNESPPTEKIPFHHEMAQ
VPAFPDKVFFQCDMPSETGGETPVLPSWEICRRLEALHPEFIRKLEKGVR
YIRVMPEEDDPSSAIGRGWKSTYATSDRSKVSNILKSLNYSGEWLPDGSL
RTISPVLPAVRHDLGENRSGRKTFFNSVVAVFTGWNDSRNKGETAIEFAD
GSYLDPSLITVAGRLMEELAVAFPWCRGDFILIDNHTVMHSRRPFTGKRI
VTASLAKALRAPLDELKKGPREEL

mRNA from alignment at CM002461.1:539455..542322-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3494 ID=rna3494|Name=rna3494|organism=Nannochloropsis gaditana|type=mRNA|length=2868bp|location=Sequence derived from alignment at CM002461.1:539455..542322- (Nannochloropsis gaditana)
GGTGTGTGTGCTGGCTTGGGCAAGGAGGAAGACGAACCCGCTCCTTTCTT
GTAATTTCGTTAATGCTTTACGCCAGCTGGCCGGCCAATGCGAACTGGTA
TCCTGGCTGGAGTTGGTATTTCACTCGAAAGAGGGAAACAGACACTCTTC
CACTTCATAGGTCGCGTGACTTGACCTGTCACCTTGACAAGGAGTGCTTA
ATTAAATGCATGAACGCATCACAAACTGTATCCCCATGTTGATTTCGGTA
CTATCTAGGTTTTTCCCAGCAGCGAGCACAGGTTTAGCCGCTCCTATCAT
GGCTTTAATTCCCACCTGCAAGGTGGTCCACTGCCAGCTGCTTCTTTTGC
TGAGTACGATTCTCTTCTTGCCGCTAGCTGTTTCCTTTCAATCGACAGAC
ACCTTACAAAGCTCTCAGGTAAGGTCGGTGTACATGTGTATGTCTTACGT
ACAATTATTTCGGCCAAGAACCCATAAAGTTCTGTTTTACTTTTTTGCAT
CTGTAGTCTTGTACAACATCGCACTCTGCAACCTTACAAAGCTTTCCATT
ACCAGCATGGGCTCTATATTTCAGACATTGCGTGCCGTAAGAGTTTTTGT
ACTCTTTTTATGATAATAATGACTTGAAAAGTGGTGATGCCTGGACTGCA
CCGTGCTGCATCTATCGTGTCATTTATATGAATACCCCACGAAGTCACAT
TTCTTCTTTTGAATTGTCCTTTGCTTCATGAAAAAAAGCAAAGCATCTTC
CTCGATTAAGGTGCATGTACTTGGTTGCACAAATCAGTGAGTCTAGGCAC
ATTCGTGTATTTTGTACGCTATCATCTCTGAAATGCCTGCGGGGGTTAGG
AAGCCGAAGCGTCCCCCTCTGGCTCCCTTTTTCAATGATATCTCTGGGTT
GTACTCACGTGCCATATCTCTGGATTGTACTGCACGTGCCTTCGTGGGCC
TATTTGAAATGCGCAAAATTCAATGCGTATTTGAGAATTCCAACTTGTCT
CTCGTTACGTGTAACAGGCATCTTTTCCCGAAGATGGTGCTGTGGTGTCC
ATTCGGATCCCTGAGCAAAAAGTCTTTGATGGCATTGAGTTCCCTCTCGT
CCTGGGACCCAATAAAAAGATGAATATCAGTGAAGGTACCTTGCAAGAGA
GGTTGACTAAGTGGGTGCTGGCGTCGACTCCTAAGTTGTTGGACGACTTG
TTGCTAAAACACGGAGCCATCCTCTTCAAGGGCTTTCACATTGATTCGCC
ACATCATTTCAACGACATAGTCGAAACATTTGGGTTTGAAAATTTTCCTT
ATGTGGGTGGGGCGGCCGTGCGGCGGCAACTCGCCCCAAGGGTTTTCACA
ACGAATGAGTCTCCGCCCACAGAGAAAATTCCTTTCCACCACGAGATGGC
GCAGGTGCCCGCTTTCCCGGATAAGGTTTTCTTTCAATGCGATATGCCCT
CTGAGACCGGGGGAGAAACTCCGGTGCTCCCATCTTGGGAAATTTGCAGG
CGCCTTGAAGCCCTTCACCCCGAATTTATTCGAAAGCTGGAGAAGGGTGT
GCGATATATCCGCGTCATGCCCGAGGAGGACGACCCTTCCTCCGCCATTG
GACGAGGTTGGAAGTCGACATATGCGACATCGGACCGTTCTAAAGTCAGC
AATATCCTGAAGTCACTAAATTATTCAGGAGAATGGTTGCCAGATGGCAG
TCTTCGCACTATCTCACCTGTCTTGCCAGCTGTGCGGCACGATCTGGGGG
AAAACCGATCCGGGCGCAAAACGTTCTTTAACTCGGTCGTGGCGGTTTTC
ACGGGCTGGAATGATTCGCGCAACAAAGGGGAAACAGCCATAGAGTTTGC
AGACGGGAGCTACCTTGATCCCAGCCTCATAACGGTAGCTGGTAGGCTAA
TGGAGGAGCTTGCAGTGGCATTTCCATGGTGTCGGGGTGACTTCATATTG
ATTGACAATCACACCGTGATGCATTCCCGGAGGCCATTTACAGGTAAACG
CATTGTCACAGCCTCCCTTGCTAAAGCTTTGCGTGCTCCTCTTGATGAAC
TTAAAAAAGGTCCGAGAGAGGAGCTCTAAGTCAAGATTGGCCGTGATCTG
AAGAATGAAACGTGCGAATCCACGAGTGTGGGAGTCTTTTTGCCCTGGAA
GGCCTGTCACGCGTAATTTTTCTTTGAAATTCTTGTACTATATTTCCTGG
TATTCGCACGAAAGAAGACATCGCGTGCATGGCTTAGGACGTACGGGTGC
CACTGGAAGGAGACGATGACGACGCGTCGCTGATAACATCCATACCAATC
AATAGGACGGCATACGGTACATTGCGACGAAACGCTGTTGAGATCAGGAG
AGGTGGTATGGTACACAAAGCTGCTGTGGCGGGATTTCCCCAATCACATT
CACTTCGAGCCACCTTCGTTATGTATTTTATGCCCTGATAGGACGAATAG
AAGCTGTAAGAGAAGCGGGAGACCGCAGACAGGTGGACATAGCAAGGTTA
AATTTGTATAAGATGCCATATGTAACGATAGCGTTCCAATTATATGTTTG
GAGTTTCAGTCGAATGAAAGCGTTGTAGCTGGGTCAAGTCAGATATGTTA
CTATCACTTACATGGAAAAGATAGCCGCAGCACTGCCGACGTGTTCGGCA
GAAAATTTTACTTTAGCTTGAAAGTTGTTCAACACCACGCCAAAGGCTTT
ACCCTTTTTAATACCCTGTACTGCATCTACTGTAGGGATAAGCGGACATT
CAACTTTTAGCACGAGGGTGAGTCAGCTTTTCAACAAAGCAGGAAACAGA
AGGTCCCGATACAACAAGGCTTATCATCCTTACAAATAGTCCAGATAACT
TTCGGCTTATAGAAACCA

Coding sequence (CDS) from alignment at CM002461.1:539455..542322-

>rna3494 ID=rna3494|Name=rna3494|organism=Nannochloropsis gaditana|type=CDS|length=2550bp|location=Sequence derived from alignment at CM002461.1:539455..542322- (Nannochloropsis gaditana)
GCATCTTTTCCCGAAGATGGTGCTGTGGTGTCCATTCGGATCCCTGAGCA
AAAAGTCTTTGATGGCATTGAGTTCCCTCTCGTCCTGGGACCCAATAAAA
AGATGAATATCAGTGAAGGTACCTTGCAAGAGAGGTTGACTAAGTGGGTG
CTGGCGTCGACTCCTAAGTTGTTGGACGACTTGTTGCTAAAACACGGAGC
CATCCTCTTCAAGGGCTTTCACATTGATTCGCCACATCATTTCAACGACA
TAGTCGAAACATTTGGGTTTGAAAATTTTCCTTATGTGGGTGGGGCGGCC
GTGCGGCGGCAACTCGCCCCAAGGGTTTTCACAACGAATGAGTCTCCGCC
CACAGAGAAAATTCCTTTCCACCACGAGATGGCGCAGGTGCCCGCTTTCC
CGGATAAGGTTTTCTTTCAATGCGATATGCCCTCTGAGACCGGGGGAGAA
ACTCCGGTGCTCCCATCTTGGGAAATTTGCAGGCGCCTTGAAGCCCTTCA
CCCCGAATTTATTCGAAAGCTGGAGAAGGGTGTGCGATATATCCGCGTCA
TGCCCGAGGAGGACGACCCTTCCTCCGCCATTGGACGAGGTTGGAAGTCG
ACATATGCGACATCGGACCGTTCTAAAGTCAGCAATATCCTGAAGTCACT
AAATTATTCAGGAGAATGGTTGCCAGATGGCAGTCTTCGCACTATCTCAC
CTGTCTTGCCAGCTGTGCGGCACGATCTGGGGGAAAACCGATCCGGGCGC
AAAACGTTCTTTAACTCGGTCGTGGCGGTTTTCACGGGCTGGAATGATTC
GCGCAACAAAGGGGAAACAGCCATAGAGTTTGCAGACGGGAGCTACCTTG
ATCCCAGCCTCATAACGGTAGCTGGTAGGCTAATGGAGGAGCTTGCAGTG
GCATTTCCATGGTGTCGGGGTGACTTCATATTGATTGACAATCACACCGT
GATGCATTCCCGGAGGCCATTTACAGGTAAACGCATTGTCACAGCCTCCC
TTGCTAAAGCTTTGCGTGCTCCTCTTGATGAACTTAAAAAAGGTCCGAGA
GAGGAGCTCTAAATGCATGAACGCATCACAAACTGTATCCCCATGTTGAT
TTCGGTACTATCTAGGTTTTTCCCAGCAGCGAGCACAGGTTTAGCCGCTC
CTATCATGGCTTTAATTCCCACCTGCAAGGTGGTCCACTGCCAGCTGCTT
CTTTTGCTGAGTACGATTCTCTTCTTGCCGCTAGCTGTTTCCTTTCAATC
GACAGACACCTTACAAAGCTCTCAGGCATCTTTTCCCGAAGATGGTGCTG
TGGTGTCCATTCGGATCCCTGAGCAAAAAGTCTTTGATGGCATTGAGTTC
CCTCTCGTCCTGGGACCCAATAAAAAGATGAATATCAGTGAAGGTACCTT
GCAAGAGAGGTTGACTAAGTGGGTGCTGGCGTCGACTCCTAAGTTGTTGG
ACGACTTGTTGCTAAAACACGGAGCCATCCTCTTCAAGGGCTTTCACATT
GATTCGCCACATCATTTCAACGACATAGTCGAAACATTTGGGTTTGAAAA
TTTTCCTTATGTGGGTGGGGCGGCCGTGCGGCGGCAACTCGCCCCAAGGG
TTTTCACAACGAATGAGTCTCCGCCCACAGAGAAAATTCCTTTCCACCAC
GAGATGGCGCAGGTGCCCGCTTTCCCGGATAAGGTTTTCTTTCAATGCGA
TATGCCCTCTGAGACCGGGGGAGAAACTCCGGTGCTCCCATCTTGGGAAA
TTTGCAGGCGCCTTGAAGCCCTTCACCCCGAATTTATTCGAAAGCTGGAG
AAGGGTGTGCGATATATCCGCGTCATGCCCGAGGAGGACGACCCTTCCTC
CGCCATTGGACGAGGTTGGAAGTCGACATATGCGACATCGGACCGTTCTA
AAGTCAGCAATATCCTGAAGTCACTAAATTATTCAGGAGAATGGTTGCCA
GATGGCAGTCTTCGCACTATCTCACCTGTCTTGCCAGCTGTGCGGCACGA
TCTGGGGGAAAACCGATCCGGGCGCAAAACGTTCTTTAACTCGGTCGTGG
CGGTTTTCACGGGCTGGAATGATTCGCGCAACAAAGGGGAAACAGCCATA
GAGTTTGCAGACGGGAGCTACCTTGATCCCAGCCTCATAACGGTAGCTGG
TAGGCTAATGGAGGAGCTTGCAGTGGCATTTCCATGGTGTCGGGGTGACT
TCATATTGATTGACAATCACACCGTGATGCATTCCCGGAGGCCATTTACA
GGTAAACGCATTGTCACAGCCTCCCTTGCTAAAGCTTTGCGTGCTCCTCT
TGATGAACTTAAAAAAGGTCCGAGAGAGGAGCTCTAAATGCATGAACGCA
TCACAAACTGTATCCCCATGTTGATTTCGGTACTATCTAGGTTTTTCCCA
GCAGCGAGCACAGGTTTAGCCGCTCCTATCATGGCTTTAATTCCCACCTG
CAAGGTGGTCCACTGCCAGCTGCTTCTTTTGCTGAGTACGATTCTCTTCT
TGCCGCTAGCTGTTTCCTTTCAATCGACAGACACCTTACAAAGCTCTCAG

Synonyms

Publications