rna3490, rna3490 (mRNA) Nannochloropsis gaditana

Overview
Namerna3490
Unique Namerna3490
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1927
Alignment locationCM002461.1:537731..538361 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g46.6132.mrna
Orig protein idgnl|cribi|Naga_100010g46.6132
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:537731..538361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g46gene3363Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3490rna3490-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27162.1cds3481Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3490 ID=rna3490|Name=rna3490|organism=Nannochloropsis gaditana|type=mRNA|length=1927bp
CCTCCATCCTTATTGCTGCTTCATTTCTTCTACATGTGTTGTTGTTTTCA
ATGCGTAAAAATCAATTATCAGCCAGAATGGCAAGTATCTTTTTCTAGGC
CATAGCCTCGGAGTTGTGAAATTGTCTGTCGAAAATTTCCGCCAGCACCT
GGGGACCGACTTCGGAGTCCTTGCCTACTACATAGGCACGAGCGCGCGCG
CCTTCACGCGAAATCTGGGATTAATTTGTTAATTTTGAACCTTTCCAACT
TTCGTCCACTTAAATAGGACATGAGGTTTTACGCTTTTCTCGTAGGAGCT
TCCCTCTTGGGTTGCGCGTTGGGTTTCATGCCCAGCACACGCATCCAACA
GCGCCGCATCGGTGAGTAGCCACCTAAGAGCATTTCTGTGTTTATTTTTC
ATTGTTGCATTCATTGTGCGTTCGCTACGTTCATGAAATTTTATTTGTCA
TGGAGTAGTGATACGTGTTATGTTTGTCAAAGACTTCGGAGTTTCCAAGA
GTCGCAGCTATGCAGTGGCATGGGTGAGGCGTGAGGCCCAGGGGTTACGG
TCTTCCGTGAATTGGCGGTTTTTGATATCAGAATTCTCGATTGAGCGGTT
TACACTCTTGAGTTGAACTCAATGCTTCTTCTCCTTGACTGCCATTCGTC
GTTTACCACTCCCTTAGTTCGCATGGAAGCGGGAGCTGCGTCTATCAAGG
GCAAGCAACCAGCTGGAAATGGGCGTAAGGTGCTCGCGCACTACATCAAG
AAGTTGAAGGAAGGAGGATACCCCGAGAAGGCTGCTGACAAGCAGTTTTC
GGACTACACGGATCGGGAGCTGGACGCGCTTTTCGATTTGACCACAGATG
AATACGATAAGATGGTCGAGGACTCTTTCAACGAGATTGGTGACTTCAAG
CTATCGGCGGAGGAAATTCAGGATGTGATTCAGGAAGCGCTGGTTGCCTC
CGAAGGGGGCGAGAAGGCCTCGCCTCTCGGCATTAAGGCGGACTATGGTG
GTGCGCAAGACGTGCTGCTCATGCTCGGACTGGCGTTCGAGCGCGTTTCT
GCGAAACTTAGCCAGGGCGGTGCCACAGGCCCCGACGGCACTAAGTACCT
CTTCATGACGGATGCTCAACTTGCGAAGTTCGATGCGGACTGCGACGCTT
TGGTCTCAGACATTGAGGAGCACTTCCAGGCTGCGATGAAGCCCATCGAC
GATAAAATCGACCACTGGGAGAAGGAGTTCAAGACTTGGGAGACGGACCC
CGTGAAATACACGGATATGCTGGGCGATATTCCGGAAGGGCTCGACCAGG
ATGCTTTCTTGAAGGCGTTTCCTGGCTATTCTGAGTACCAGGATACATGG
TCCGACAATTAAGTGCTTCAAAGGGCTGGGGGAGGCGGACTTTGGATGGG
AACCCTCAGGAAATAGATTGGATTGCCTTGATGGTCTGGAGCAGCTATCT
TATTTATAATTGACTTTGCAGTGTCAACATCGCCGCAAGACACACAATCA
CACCAGTGGGCCGGGAGGTGGTGCTGCCCTTGTCTCAGACGACAATGCAG
AAGCCGTCAAGCAGTAAAGATTCTCCGCGAGCCTTCGAAAGGGTGAGAAT
AAAAGTGATCTTAGGTAATGTACCCAGCCGGCACGCCACTACTGTTTTTC
GTGTGAGATTTCTCAGAGCATTTGGATGAGCTGGAGGGTTTGCATGGAAG
CGTGAGGGCTTTGAATTGTTCCTGTCGTCGCCAGCTCCATCCCTCGAGAG
AGTCTACTGTCATGTATGTGTATGGTTTGTGACGGAGATCTGGATGTGGG
CTCAGAAGTTTTCTTTCAAGGGATGGTGGCATCCGACAAGTGCGTACACT
GAGATGAGATCTTGCGTATCAGGACAGCATTTGTCTTAAACAAGAGAAGA
AGGAAACAAAAAGTCACTGGAAATATG
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protein sequence of rna3490

>rna3490-protein ID=rna3490-protein|Name=rna3490|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MQNYGIPFLIGLLAVCDLTQESPGTTRGFRIEHLHEEHGLRRKYRRRKMD
NVKRLKCEVDVSLALSRYELCDSGTPATFLRHIEVIKIGRIWETNGDISE
VQDSILMWASGSKNCR
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mRNA from alignment at CM002461.1:537731..538361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3490 ID=rna3490|Name=rna3490|organism=Nannochloropsis gaditana|type=mRNA|length=631bp|location=Sequence derived from alignment at CM002461.1:537731..538361- (Nannochloropsis gaditana)
ATGCAGAATTATGGCATTCCTTTTCTCATTGGACTCCTGTCTATCATGAA
ATTTAAGACGGGTTTGCCCATGGCATGGCTTCGCCGTGCCTAATATTTTC
TTTTATCTGACGATACATTTGTCTTTCCAACGCTATATTTAAGGCTCTGT
GGCAGTCACAATCCATCGAACGAAAGTATGTTGAGGCAAAAATCACCGGA
TGTCGATTCGGACTGATATAAATGCGATGTTTGCTTAGCGTAGCATCTTA
TTTCTACGTTAGCTCGGGCCACACTTTTCTTGCAAGGCCATAACTTTCTT
TTTTTTCGATTAAAGTAGAGCTGTTTGTGATCTAACGCAAGAAAGCCCTG
GTACAACAAGAGGCTTCAGAATCGAGCACCTGCACGAAGAGCACGGGCTG
CGCCGAAAGTATCGTCGCCGCAAGATGGACAACGTAAAACGCTTGAAGTG
CGAAGTAGATGTCAGCTTAGCGCTGTCAAGATATGAACTATGCGACTCAG
GCACACCAGCTACATTTCTTCGACACATCGAAGTGATTAAGATCGGACGC
ATTTGGGAAACAAACGGAGACATATCTGAAGTGCAAGATTCGATTTTGAT
GTGGGCGTCGGGCAGTAAGAATTGCCGTTGA
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Coding sequence (CDS) from alignment at CM002461.1:537731..538361-

>rna3490 ID=rna3490|Name=rna3490|organism=Nannochloropsis gaditana|type=CDS|length=702bp|location=Sequence derived from alignment at CM002461.1:537731..538361- (Nannochloropsis gaditana)
AGCTGTTTGTGATCTAACGCAAGAAAGCCCTGGTACAACAAGAGGCTTCA
GAATCGAGCACCTGCACGAAGAGCACGGGCTGCGCCGAAAGTATCGTCGC
CGCAAGATGGACAACGTAAAACGCTTGAAGTGCGAAGTAGATGTCAGCTT
AGCGCTGTCAAGATATGAACTATGCGACTCAGGCACACCAGCTACATTTC
TTCGACACATCGAAGTGATTAAGATCGGACGCATTTGGGAAACAAACGGA
GACATATCTGAAGTGCAAGATTCGATTTTGATGTGGGCGTCGGGCAGTAA
GAATTGCCGTTGAATGCAGAATTATGGCATTCCTTTTCTCATTGGACTCC
TAGCTGTTTGTGATCTAACGCAAGAAAGCCCTGGTACAACAAGAGGCTTC
AGAATCGAGCACCTGCACGAAGAGCACGGGCTGCGCCGAAAGTATCGTCG
CCGCAAGATGGACAACGTAAAACGCTTGAAGTGCGAAGTAGATGTCAGCT
TAGCGCTGTCAAGATATGAACTATGCGACTCAGGCACACCAGCTACATTT
CTTCGACACATCGAAGTGATTAAGATCGGACGCATTTGGGAAACAAACGG
AGACATATCTGAAGTGCAAGATTCGATTTTGATGTGGGCGTCGGGCAGTA
AGAATTGCCGTTGAATGCAGAATTATGGCATTCCTTTTCTCATTGGACTC
CT
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Synonyms
Publications