rna3489, rna3489 (mRNA) Nannochloropsis gaditana

Overview
Namerna3489
Unique Namerna3489
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length820
Alignment locationCM002461.1:534886..536812 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g45.6123.mrna
Orig protein idgnl|cribi|Naga_100010g45.6123
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:534886..536812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g45gene3362Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27153.1cds3480Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3489rna3489-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3489 ID=rna3489|Name=rna3489|organism=Nannochloropsis gaditana|type=mRNA|length=820bp
ACGACTTGTGCGCATTGTCTGCCCTGATCTGCTGTGCTCGAGCTTATGTT
CTCCAGAGGACGTCTTCCCGGCTAGTGCAGACTTCAGGAAGAGCTTGACG
ATATACGCTTGTTGTGTATATCATATTTACATGCCTTACTGCTTTTTGGT
CGTCGGTCTCCTTCTCGAAGGCGCGGCGTAGCTGTCTTTCATCCTTCCTC
CCGCCATTACACATTTTACAGGGGCGTTTGAGCACCAAATTGAGTGCGTA
CAAGCGAATTTAAGCTAGGAACAGTGTGAATCTGTGCGATGTCGGCTGAT
GAAATTGCGGGGGCCTTTGCACAGCACTACTACGGCACGCTGGACAGCAA
TATCGCAGGGTTAGGAGCATTATACCGTGACGCATCTATGCTCACATTCG
AAGGCCAGCAGTTCATGGGAGGAACCAATATCTCGCAGAAGATGGCTGGT
TTGGGGAAGTTGGTGCACAATGTGCAGCGGTTTGATGTACAGCCGTCGTT
GGACCCTTCAAATCTGATCATAGCTGTTGTGGGTCAGGTTAAGCTGGACG
GACAGGAGAATCCGCTTCATTTTTCTGAATTTTTCCAATTGGTGGCATCT
TCACCTGGCCAGTATTACATTCATAATCAGATATTCAGGCTCAATTACGC
CTGAGCACGTAACCCACAATCATGCCTCAAACTTGAACGACGTCACATTC
TAGGATCTTTTTGCCGATTTGAAGACGGAACACTAATTGAAACTGACTCG
TTCGATACTGGCGAGCAGATGGTGTGCACCAGAGTAGGGAAAAGCATGAT
CTGAACAAAGCGCTCTTCTT
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protein sequence of rna3489

>rna3489-protein ID=rna3489-protein|Name=rna3489|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MLLLLDCHSSFTTPLVRMEAGAASIKGKQPAGNGRKVLAHYIKKLKEGGY
PEKAADKQFSDYTDRELDALFDLTTDEYDKMVEDSFNEIGDFKLSAEEIQ
DVIQEALVASEGGEKASPLGIKADYGGAQDVLLMLGLAFERVSAKLSQGG
ATGPDGTKYLFMTDAQLAKFDADCDALVSDIEEHFQAAMKPIDDKIDHWE
KEFKTWETDPVKYTDMLGDIPEGLDQDAFLKAFPGYSEYQDTWSDN
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mRNA from alignment at CM002461.1:534886..536812-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3489 ID=rna3489|Name=rna3489|organism=Nannochloropsis gaditana|type=mRNA|length=1927bp|location=Sequence derived from alignment at CM002461.1:534886..536812- (Nannochloropsis gaditana)
CCTCCATCCTTATTGCTGCTTCATTTCTTCTACATGTGTTGTTGTTTTCA
ATGCGTAAAAATCAATTATCAGCCAGAATGGCAAGTATCTTTTTCTAGGC
CATAGCCTCGGAGTTGTGAAATTGTCTGTCGAAAATTTCCGCCAGCACCT
GGGGACCGACTTCGGAGTCCTTGCCTACTACATAGGCACGAGCGCGCGCG
CCTTCACGCGAAATCTGGGATTAATTTGTTAATTTTGAACCTTTCCAACT
TTCGTCCACTTAAATAGGACATGAGGTTTTACGCTTTTCTCGTAGGAGCT
TCCCTCTTGGGTTGCGCGTTGGGTTTCATGCCCAGCACACGCATCCAACA
GCGCCGCATCGGTGAGTAGCCACCTAAGAGCATTTCTGTGTTTATTTTTC
ATTGTTGCATTCATTGTGCGTTCGCTACGTTCATGAAATTTTATTTGTCA
TGGAGTAGTGATACGTGTTATGTTTGTCAAAGACTTCGGAGTTTCCAAGA
GTCGCAGCTATGCAGTGGCATGGGTGAGGCGTGAGGCCCAGGGGTTACGG
TCTTCCGTGAATTGGCGGTTTTTGATATCAGAATTCTCGATTGAGCGGTT
TACACTCTTGAGTTGAACTCAATGCTTCTTCTCCTTGACTGCCATTCGTC
GTTTACCACTCCCTTAGTTCGCATGGAAGCGGGAGCTGCGTCTATCAAGG
GCAAGCAACCAGCTGGAAATGGGCGTAAGGTGCTCGCGCACTACATCAAG
AAGTTGAAGGAAGGAGGATACCCCGAGAAGGCTGCTGACAAGCAGTTTTC
GGACTACACGGATCGGGAGCTGGACGCGCTTTTCGATTTGACCACAGATG
AATACGATAAGATGGTCGAGGACTCTTTCAACGAGATTGGTGACTTCAAG
CTATCGGCGGAGGAAATTCAGGATGTGATTCAGGAAGCGCTGGTTGCCTC
CGAAGGGGGCGAGAAGGCCTCGCCTCTCGGCATTAAGGCGGACTATGGTG
GTGCGCAAGACGTGCTGCTCATGCTCGGACTGGCGTTCGAGCGCGTTTCT
GCGAAACTTAGCCAGGGCGGTGCCACAGGCCCCGACGGCACTAAGTACCT
CTTCATGACGGATGCTCAACTTGCGAAGTTCGATGCGGACTGCGACGCTT
TGGTCTCAGACATTGAGGAGCACTTCCAGGCTGCGATGAAGCCCATCGAC
GATAAAATCGACCACTGGGAGAAGGAGTTCAAGACTTGGGAGACGGACCC
CGTGAAATACACGGATATGCTGGGCGATATTCCGGAAGGGCTCGACCAGG
ATGCTTTCTTGAAGGCGTTTCCTGGCTATTCTGAGTACCAGGATACATGG
TCCGACAATTAAGTGCTTCAAAGGGCTGGGGGAGGCGGACTTTGGATGGG
AACCCTCAGGAAATAGATTGGATTGCCTTGATGGTCTGGAGCAGCTATCT
TATTTATAATTGACTTTGCAGTGTCAACATCGCCGCAAGACACACAATCA
CACCAGTGGGCCGGGAGGTGGTGCTGCCCTTGTCTCAGACGACAATGCAG
AAGCCGTCAAGCAGTAAAGATTCTCCGCGAGCCTTCGAAAGGGTGAGAAT
AAAAGTGATCTTAGGTAATGTACCCAGCCGGCACGCCACTACTGTTTTTC
GTGTGAGATTTCTCAGAGCATTTGGATGAGCTGGAGGGTTTGCATGGAAG
CGTGAGGGCTTTGAATTGTTCCTGTCGTCGCCAGCTCCATCCCTCGAGAG
AGTCTACTGTCATGTATGTGTATGGTTTGTGACGGAGATCTGGATGTGGG
CTCAGAAGTTTTCTTTCAAGGGATGGTGGCATCCGACAAGTGCGTACACT
GAGATGAGATCTTGCGTATCAGGACAGCATTTGTCTTAAACAAGAGAAGA
AGGAAACAAAAAGTCACTGGAAATATG
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Coding sequence (CDS) from alignment at CM002461.1:534886..536812-

>rna3489 ID=rna3489|Name=rna3489|organism=Nannochloropsis gaditana|type=CDS|length=741bp|location=Sequence derived from alignment at CM002461.1:534886..536812- (Nannochloropsis gaditana)
ATGCTTCTTCTCCTTGACTGCCATTCGTCGTTTACCACTCCCTTAGTTCG
CATGGAAGCGGGAGCTGCGTCTATCAAGGGCAAGCAACCAGCTGGAAATG
GGCGTAAGGTGCTCGCGCACTACATCAAGAAGTTGAAGGAAGGAGGATAC
CCCGAGAAGGCTGCTGACAAGCAGTTTTCGGACTACACGGATCGGGAGCT
GGACGCGCTTTTCGATTTGACCACAGATGAATACGATAAGATGGTCGAGG
ACTCTTTCAACGAGATTGGTGACTTCAAGCTATCGGCGGAGGAAATTCAG
GATGTGATTCAGGAAGCGCTGGTTGCCTCCGAAGGGGGCGAGAAGGCCTC
GCCTCTCGGCATTAAGGCGGACTATGGTGGTGCGCAAGACGTGCTGCTCA
TGCTCGGACTGGCGTTCGAGCGCGTTTCTGCGAAACTTAGCCAGGGCGGT
GCCACAGGCCCCGACGGCACTAAGTACCTCTTCATGACGGATGCTCAACT
TGCGAAGTTCGATGCGGACTGCGACGCTTTGGTCTCAGACATTGAGGAGC
ACTTCCAGGCTGCGATGAAGCCCATCGACGATAAAATCGACCACTGGGAG
AAGGAGTTCAAGACTTGGGAGACGGACCCCGTGAAATACACGGATATGCT
GGGCGATATTCCGGAAGGGCTCGACCAGGATGCTTTCTTGAAGGCGTTTC
CTGGCTATTCTGAGTACCAGGATACATGGTCCGACAATTAA
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Synonyms
Publications