rna3487, rna3487 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3487
Unique Name	rna3487
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1953
Alignment location	CM002461.1:531082..533204 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100010g42.6121.mrna
Orig protein id	gnl\|cribi\|Naga_100010g42.6121
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:531082..533204 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g42	gene3360	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3487	rna3487-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27151.1	cds3478	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:531082..533204+
coding sequence from alignment at CM002461.1:531082..533204+

mRNA sequence

>rna3487 ID=rna3487|Name=rna3487|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp
TTAGACCTACTTGCGTTTGAGCGAGGGAGGCGAGCGGATGAGCGGGCGAT
TGCGGGCACGGCAACTCAAGTTGCCGCTGGTGGCGAGGAAGGCCAGGGAT
AGGCGGGGCAAGCGAGACAGTGGTGTATGAGGAGGAGCACGCGAATGCAA
ACCGTCCCGTGGGGCGAATAAACAGCACGCAGTGGAAGCATTTGGTTACA
ATGTCGTCCTTCTATGCACATAGCTCAAGCTCAATGAAGATGAAGAATCA
AACATAACAGTATCTATTGACCGGTACTTATGACGATATTATCAATCAAT
CTATCGGCACAGCACTAGACAATGGCACATGCAAATTCACTGCTCCTGTT
TCAGAAGGTAGCATTCTGTCACACGAATTTAGCCTTGCGCAAAATTTTAC
CATCTTTCGCTGCTTCGAATCGTGCTGGCTCCACCTTTGCGAACATACCC
TTAGGACCCCCGGATCCGATTTTTGGTTTGACGGACGCTTTCAATAAAGA
CACATCCCCCAAGAAAGTGAGTCTTGGGGTCGGGGCCTACCGGGGTGACA
AGGGGAAACCTCACGTTTTGGAATCTGTGCGTCGTGCTGAGAAAAAGGTA
TTAGAGGCGAAGATGAACCATGAATATGCAGGCATTCAAGGCGTAGGCGA
ATACGTGCAGTTAGCGCTCGAATTTGCATACGGCGCAGATTCAACCGCTT
TGAAAGAAAAGCGTGTGGCAGGTTCACAAACGATTTCCGGTACGGGGGCA
TGTCGCTTGGCGGGGGAGTTCTACGCGCGCTTTATGGGCAAAGGCAGCCC
ACTGTACTTGCCCAGCCCGACATGGGGAAACCATGTTCCTATTTTCAGGG
ACGCGGGACTCGAGGTAAAGCGCTATCGGTACTTTGATCCTGAGACGAAC
GGCTTGGACTTCAAGGGCGTCCTGGAGGATGTTAACCAGGCGCCTGAGGG
CTCCATCTTCTTGCTCCATGCCTGTGCGCACAACCCTACGGGGGTGGACC
CCTCGGAAGAGCAGTGGAGGGAATTGTCCGCACTATTCAAAAGAAAGGGA
CATGCCATCCTCTTCGATGCAGCGTATTTGGGTTTTGCGTCGGGCAATGT
TGAGAAGGACGCGTTTGCTCTGCGGCATTTCGCGATGGAGGGGCACAATT
TCTTGATGGCCCAGTCTTTCGCCAAGAACTTCGGTCTGTACGGTGAGCGA
GTAGGAACGCTTTCAGCGGTTTGCGCGAGCGCTGAAGAAGCGAAGCGGGT
TGAGTCTCAACTGAAAATCCTGATACGGCCCATGTACTCGAACCCGCCTA
TCTACGGCGCACGTTTGGTTGCGACTATCTTGACGGACCCGGAGCTAAAG
CCACTTTTTTACAAGGATTGTAAGGCCATGGCGGACCGTATCATAGAGAT
GCGCTCACTGCTGCGATACTCGATGGAAAAATTAGGTTCTAAGCTTTCAT
GGCGGCATGTTACTGATCAGATCGGAATGTTCTGCTTTACAGGACTTCGT
CCCGCTGAGGTGGCTGAGCTCAAGGAGAAGTATCATATCTACATAACCGA
CGATGGCCGCATCTCCATCGCAGGCCTCAACACGGCCAATGTGCAATACG
TGGCCGCAAGCTTTCACGCCGTGACATCCAAACGCTGAGCCCAACTAATT
TACAAAAGGGTTAGGACTGGAAATTCGGGAATATGTCTCTCAAGACTCAG
GCACCATCCTCAAAAATACGAGTTAACTCGATAACTGACGTCAAAAGAGG
GAGAGTGAAGTCGTCGGCAAATGTCATTCCATACTATTGTCTGGAAATTG
AAAAACGACATATATATGGGGCCACCCTTACCTAGGGCATTGTCGCATGT
TTGTCATGTTGGGTTCAAGAGAGTCAACGAGCCTGTCCTTGATATCATTG
GACGTGTGCAAATAGAACACGCATCAATAAAACTTAAGCCACGAGCATTT
TCG

protein sequence of rna3487

>rna3487-protein ID=rna3487-protein|Name=rna3487|organism=Nannochloropsis gaditana|type=polypeptide|length=511bp
MFSSRQVVGHGNDGGVPVSAGEAGRLLSGSTTQTIGGTFNSETHLQQPPQ
KQLHHVIKDRNSPTFYQKRSRLVYLPRVGPLERTMKWALTGFAIYLALTF
LGVVFLVLKSLEFDKLPPFARTGLILKGYWLIFTPFWAADLVAWMVVLWA
LHWTCSLRTSGVQHESRIMAPSSHREAQKTLSTEMLPLFQIVMRALLNAT
PFLLCITAAHILLFIFLQSGGGNFGRPWVSLWLAILPIVLWEMLALISAI
CLRTGSFSKALGWLLILFATLMVGLRFSSPPFPLSSIPCIRAAHNAPLWV
TFTPFWALEILLLATLVYVSIQACCARRYRLSSQHVSCIILYTSSLGFLA
LASVMFAWRHGTWESGLNHALRLQNFSDTLSGIATLCAVGFAELGFYLVA
ADEVEHLTTSHGYEDPMPLSRTARGWEPTGARVSNWLLLGRLEETARLMR
RGGLAGTSGSTTAAAGRGLSGVGVNMTRNSPLRDYQGYSGREGRELRRSN
SGSYADLYDDL

mRNA from alignment at CM002461.1:531082..533204+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3487 ID=rna3487|Name=rna3487|organism=Nannochloropsis gaditana|type=mRNA|length=2123bp|location=Sequence derived from alignment at CM002461.1:531082..533204+ (Nannochloropsis gaditana)
AGGAATGTGGGGGGAAATTCACGGTCCTTATTTTGGGATGTCACTTGTAG
CTAAGTCCTCCGAAATGATGCATAATCCCTCCTCTAACTCCCCTTAAATC
TCTTCGGCAACaggcgccctccttcccaggcaCTCACCTCTCTCAACATC
CTCTCGATCCGACCTACCGGACGCTTGCTGCTACGGGATGTTTTCGAGTC
GACAAGTTGTCGGTCATGGCAACGATGGTGGAGTTCCTGTGAGCGCAGGC
GAGGCTGGTCGGCTGCTTTCCGGCAGCACGACGCAGACTATTGGTGGCAC
TTTTAATTCTGAGACACATCTGCAACAGCCGCCTCAAAAACAGCTGCATC
ACGTAATAAAGGATAGAAATAGTCCTACTTTTTATCAGAAACGCTCTCGT
CTCGTGTATCTGCCCCGAGTGGGTCCCCTGGAGCGGACGATGAAGTGGGC
ACTAACAGGTTTCGCCATTTATCTAGCCTTAACTTTCCTGGGGGTTGTAT
TCCTCGTGCTAAAGAGCCTGGAATTTGATAAATTGCCTCCTTTTGCTCGC
ACGGGCTTAATTTTGAAAGGTTACTGGCTGATTTTTACCCCTTTCTGGGC
CGCCGACCTCGTGGCTTGGATGGTGGTGCTTTGGGCCTTGCATTGGACTT
GCTCGTTGCGCACTAGCGGTGTACAGCATGAAAGTCGAATTATGGCCCCT
TCGTCTCATAGAGAAGCTCAGAAGACTTTAAGTACAGAAATGTTGCCCTT
GTTCCAGATAGTGATGCGTGCGCTTCTTAATGCAACACCATTCTTACTGT
GCATCACCGCGGCGCACATTTTACTCTTCATTTTCCTGCAGAGCGGAGGA
GGCAATTTTGGGCGACCATGGGTGTCTTTGTGGTTGGCAATTTTGCCTAT
TGTCTTGTGGGAAATGCTTGCATTAATAAGCGCGATATGTTTAAGGACGG
GATCCTTTTCCAAAGCGTTGGGTTGGCTACTGATACTCTTCGCTACTTTG
ATGGTCGGCCTGCGCTTTTCTtcgccgcccttccccttatCAAGCATCCC
CTGCATACGAGCTGCGCATAATGCACCTCTATGGGTGACATTTACACCGT
TTTGGGCGCTGGAAATCCTATTACTCGCCACATTGGTGTACGTGTCCATT
CAAGCTTGTTGTGCCCGGCGTTATCGCCTTTCTTCCCAGCATGTATCCTG
CATCATTCTATACACCAGCAGTCTTGGATTTTTGGCATTGGCCTCTGTAA
TGTTTGCCTGGCGACACGGGACCTGGGAATCAGGACTAAATCACGCATTG
CGTCTTCAAAACTTCTCCGACACGCTTTCGGGCATTGCCACCTTGTGCGC
CGTGGGCTTTGCGGAGCTTGGATTTTATCTTGTAGCAGCCGACGAAGTTG
AGCATTTGACTACGAGTCATGGCTACGAGGACCCCATGCCCTTGAGTCGA
ACAGCTCGCGGATGGGAGCCAACAGGAGCGCGTGTTTCGAACTGGCTGTT
GCTGGGTCGCCTAGAGGAGACGGCCCGCCTCATGCGCCGCGGTGGGTTGG
CTGGAACGAGTGGTAGCACAACCGCTGCAGCTGGGCGAGGGCTGTCAGGT
GTAGGCGTGAATATGACAAGGAATTCACCCCTGCGCGATTACCAAGGATA
CAGTGGACGGGAGGGTCGTGAGCTGCGGCGAAGTAATTCGGGATCCTACG
CTGACCTCTATGACGATTTGTAGCGACAAATACAGATTGGAAGGATATTC
CTGGTTTTTATGGGAGGGACGATCCGATGCCTGCTAGTGGACACGGTTGA
CAAAGCAGGTCTCGGGATATGTTTTGTCGCTCGCAGCAAAAAGTTGAATG
GCGGGTGCTGCTTGGAAAAGCACACAgatgagagggagagagcggtATGT
ACTCAAATTTTGAGAAACTTTTGTAAAGTAGAAAAGGACACGTCCGAAAA
AAATCAGCGAGAGAACGGTAAAAGAAGAGCGCTTTGTTCAGATCATGCTT
TTCCCTACTCTGGTGCACACCATCTGCTCGCCAGTATCGAACGAGTCAGT
TTCAATTAGTGTTCCGTCTTCAAATCGGCAAAAAGATCCTAGAATGTGAC
GTCGTTCAAGTTTGAGGCATGAT

Coding sequence (CDS) from alignment at CM002461.1:531082..533204+

>rna3487 ID=rna3487|Name=rna3487|organism=Nannochloropsis gaditana|type=CDS|length=1536bp|location=Sequence derived from alignment at CM002461.1:531082..533204+ (Nannochloropsis gaditana)
ATGTTTTCGAGTCGACAAGTTGTCGGTCATGGCAACGATGGTGGAGTTCC
TGTGAGCGCAGGCGAGGCTGGTCGGCTGCTTTCCGGCAGCACGACGCAGA
CTATTGGTGGCACTTTTAATTCTGAGACACATCTGCAACAGCCGCCTCAA
AAACAGCTGCATCACGTAATAAAGGATAGAAATAGTCCTACTTTTTATCA
GAAACGCTCTCGTCTCGTGTATCTGCCCCGAGTGGGTCCCCTGGAGCGGA
CGATGAAGTGGGCACTAACAGGTTTCGCCATTTATCTAGCCTTAACTTTC
CTGGGGGTTGTATTCCTCGTGCTAAAGAGCCTGGAATTTGATAAATTGCC
TCCTTTTGCTCGCACGGGCTTAATTTTGAAAGGTTACTGGCTGATTTTTA
CCCCTTTCTGGGCCGCCGACCTCGTGGCTTGGATGGTGGTGCTTTGGGCC
TTGCATTGGACTTGCTCGTTGCGCACTAGCGGTGTACAGCATGAAAGTCG
AATTATGGCCCCTTCGTCTCATAGAGAAGCTCAGAAGACTTTAAGTACAG
AAATGTTGCCCTTGTTCCAGATAGTGATGCGTGCGCTTCTTAATGCAACA
CCATTCTTACTGTGCATCACCGCGGCGCACATTTTACTCTTCATTTTCCT
GCAGAGCGGAGGAGGCAATTTTGGGCGACCATGGGTGTCTTTGTGGTTGG
CAATTTTGCCTATTGTCTTGTGGGAAATGCTTGCATTAATAAGCGCGATA
TGTTTAAGGACGGGATCCTTTTCCAAAGCGTTGGGTTGGCTACTGATACT
CTTCGCTACTTTGATGGTCGGCCTGCGCTTTTCTtcgccgcccttcccct
tatCAAGCATCCCCTGCATACGAGCTGCGCATAATGCACCTCTATGGGTG
ACATTTACACCGTTTTGGGCGCTGGAAATCCTATTACTCGCCACATTGGT
GTACGTGTCCATTCAAGCTTGTTGTGCCCGGCGTTATCGCCTTTCTTCCC
AGCATGTATCCTGCATCATTCTATACACCAGCAGTCTTGGATTTTTGGCA
TTGGCCTCTGTAATGTTTGCCTGGCGACACGGGACCTGGGAATCAGGACT
AAATCACGCATTGCGTCTTCAAAACTTCTCCGACACGCTTTCGGGCATTG
CCACCTTGTGCGCCGTGGGCTTTGCGGAGCTTGGATTTTATCTTGTAGCA
GCCGACGAAGTTGAGCATTTGACTACGAGTCATGGCTACGAGGACCCCAT
GCCCTTGAGTCGAACAGCTCGCGGATGGGAGCCAACAGGAGCGCGTGTTT
CGAACTGGCTGTTGCTGGGTCGCCTAGAGGAGACGGCCCGCCTCATGCGC
CGCGGTGGGTTGGCTGGAACGAGTGGTAGCACAACCGCTGCAGCTGGGCG
AGGGCTGTCAGGTGTAGGCGTGAATATGACAAGGAATTCACCCCTGCGCG
ATTACCAAGGATACAGTGGACGGGAGGGTCGTGAGCTGCGGCGAAGTAAT
TCGGGATCCTACGCTGACCTCTATGACGATTTGTAG

Synonyms

Publications