rna3486, rna3486 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3486
Unique Name	rna3486
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1967
Alignment location	CM002461.1:528353..530484 +

Link to JBrowse

Properties


Property Name	Value
Product	aspartate aminotransferase
Orig transcript id	gnl\|cribi\|Naga_100010g40.6174.mrna
Orig protein id	gnl\|cribi\|Naga_100010g40.6174
Gene	AAT
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:528353..530484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
AAT	gene3359	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3486	rna3486-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27204.1	cds3477	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:528353..530484+
coding sequence from alignment at CM002461.1:528353..530484+

mRNA sequence

>rna3486 ID=rna3486|Name=rna3486|organism=Nannochloropsis gaditana|type=mRNA|length=1967bp
CATTGAACAGGAATGATGGACAAAAGACTCACATTCCCATGGTTGCTGCC
GGTCATCTTGGCAGTAATGACGGCGGATGCCACCACGGACGCTTTCTTAA
GTCACTTGCCCTCTCACAAAGGAGACCCGAGCATGAGCATGGTAAATGTA
GCCGATGTTGCCTTGATTTCTGAAAGCCGATCAGGGAGCAACGACGGAAA
TTTTTTTATTTCGTATGGCATGGAACAAAACGGTCGCTTGATTCCTCTTC
CTGTCCCCCACTCGCCTACCCTATCACGGCCTTCCGATGCGTCGCGAGTC
TCCACACCACACTATGATAGCCGTGCAAACAGGTACTCTAGTATAATGTG
GGTCATCAGAAAGCAGAGTGAAGTCCGGTCTATTGTACGAAACGCGAAAC
GAAGGCTGAAGACGTTATTGCACACTGTTTTCTTGCCAGTTGGGTTCCCG
TCGAGCGTGGCTCCGGAATATCTGCGATATCAGCAATGGAATGTTGTACA
GGATTTAAGCACTTACTTGCGTGGCATTTTGGCAACGCAGGCTATACTAG
AAGGTGTAGGCGTAGGGCGGGAAGGGGCTACACCCTTGGCAGCGACACTC
CAATGGATCACACGGGACGGAGCGTCTATGATGAGTGGACTCGTGTTTAC
ATCCTTCTTGAGCACCAATTTTGGTGTCAATGCCAAAAGCTGGCGTCTCT
TCGCCGATTTCATGGTTGATATTGGTATTACACTAGATATGTTAGCCCCA
CTTTTCCCCAAAAACTTTTTGCTATGCATATGTCTCGCCTCGGTTTGCAA
AAGTCTCTGTGGAATCGCTGCTGGGGCCTCGAATGGCAACATAGTCGAGC
ACATGGCTAGAACCAACAATCTCGCCGAGGTACTAGCCAAAGGTGGGGCT
CAGCATACAGCTGTGAGCCTTTTCGGACTCGGATTCGGGATGTGGTTCGC
CCGCGTAGCCAACCAATCCCCTCGCCGAGTGTGGACGGCATACACACTGC
TAACTGTCATTCACCTCACAGCTAATTACGCGGCCATGCGCGTGTTAGCC
TTCACGTCCATCAACCGTCGCCGTCTTAACGTGCTGTTGACGGCATTTCG
AGAAAACGCCAGCGTCTTATCACCAGCCGAGGTAGCTCGCCGGGAGACAA
TCATCGTGGACGTGGGGCGTTGGCGGCCCCCAAAGTTGTGGACCGCCTTA
TTTCAAAAGGGAAAGAGGAGGGCGACAGCAGAATTGGCAAAGGATGCTCA
TGCGCCTATCTGGAACATACGTTTGGGGGTACGTGTGAAGGACCTCACAA
GGTTCGCCGAGGGGCTTACGGAGTTGCAACGCCTGTTTTCCCAAGAGCAA
TATATGTTGAACATGGTCAACGTCTTTGACGGTGAACTGCCGACAAGAAA
AGTTACAAGGAAGATCCAGATTGCGGTGGCTTTACGAGAGGATGCAACAA
ATTTGACTCTGCTGAAAGCGTGTCTCCATGCCGATCTCATCGCGCGGAGA
GGCTTTGAGGCCGTGAAAAGGAAAAAAGGGACAGAGAATATAGAGATAAT
CTCAAGTGTGATCTCTTCCACATATCAGGAATTGTGTCAGTGCTTCCCAA
ACATGGTGCAAGGACTTCGACGGCAGGGGTGGAATCTGGAACGCGTGTTG
CTTTCACCCGAGGGATGGATATACCACAAGATAATTGAATGATTCTGCAG
GAAAGAGACTTGGAAAGAGCCCTTCTTGTTGTACCTCTTCCTAATTTATA
TTTCTTTTCCGTCGGTCTATAGATAACAAATTTGAAAAAGCAGACGCCGG
CCCTCTTTAGCCATGAATGCCTCGACAATCTCAGGAGCCTCGGTAGCCAG
GTCGACGCTCTCCTCCAGCTGTGCAAATTGGATGAAATGGAAAGTAGTGA
ATAGTACCGGTGGTCGGGTATGATGGCGGGAATTATTACAACCGCTAAGG
CAAGTCATAAAAGCCAG

protein sequence of rna3486

>rna3486-protein ID=rna3486-protein|Name=rna3486|organism=Nannochloropsis gaditana|type=polypeptide|length=438bp
MAHANSLLLFQKVAFCHTNLALRKILPSFAASNRAGSTFANIPLGPPDPI
FGLTDAFNKDTSPKKVSLGVGAYRGDKGKPHVLESVRRAEKKVLEAKMNH
EYAGIQGVGEYVQLALEFAYGADSTALKEKRVAGSQTISGTGACRLAGEF
YARFMGKGSPLYLPSPTWGNHVPIFRDAGLEVKRYRYFDPETNGLDFKGV
LEDVNQAPEGSIFLLHACAHNPTGVDPSEEQWRELSALFKRKGHAILFDA
AYLGFASGNVEKDAFALRHFAMEGHNFLMAQSFAKNFGLYGERVGTLSAV
CASAEEAKRVESQLKILIRPMYSNPPIYGARLVATILTDPELKPLFYKDC
KAMADRIIEMRSLLRYSMEKLGSKLSWRHVTDQIGMFCFTGLRPAEVAEL
KEKYHIYITDDGRISIAGLNTANVQYVAASFHAVTSKR

mRNA from alignment at CM002461.1:528353..530484+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3486 ID=rna3486|Name=rna3486|organism=Nannochloropsis gaditana|type=mRNA|length=2132bp|location=Sequence derived from alignment at CM002461.1:528353..530484+ (Nannochloropsis gaditana)
TTAGACCTACTTGCGTttgagcgagggaggcgagcgGATGAGCGGGCGAT
TGCGGGCACGGCAACTCAAGTTGCCGCtggtggcgaggaaggccaggGAT
AGGCGGGGCAAGCGAGACAGTGGTGtatgaggaggagcacgcGAATGCAA
ACCGTCCCGTGGGGCGAATAAACAGCACGCAGTGGAAGCATTTGGTTACA
ATGTCGTCCTTCTATGCACATAGCTCAAGCTcaatgaagatgaagaatcA
AACATAACAGTATCTATTGACCGGTACTTATGACGATATTATCAATCAAT
CTATCGGCACAGCACTAGACAATGGCACATGCAAATTCACTGCTCCTGTT
TCAGAAGGTAGCATTCTGTCACACGAATTTAGCCTTGCGCAAAATTTTAC
CATCTTTCGCTGCTTCGAATCGTGCTGGCTCCACCTTTGCGAACATACCC
TTAGGACCCCCGGATCCGATTTTTGGTTTGACGGACGCTTTCAATAAAGA
CACATCCCCCAAGAAAGTGAGTCTTGGGGTCGGGGCCTACCGGGGTGACA
AGGGGAAACCTCACGTTTTGGAATCTGTGCGTCGTGCTGAGAAAAAGGTA
TTAGAGGCGAAGATGAACCATGAATATGCAGGCATTCAAGGCGTAGGCGA
ATACGTGCAGTTAGCGCTCGAATTTGCATACGGCGCAGATTCAACCGCTT
TGAAAGAAAAGCGTGTGGCAGGTTCACAAACGATTTCCGGTACGGGGGCA
TGTCGCTTGGCGGGGGAGTTCTACGCGCGCTTTATGGGCAAAGGCAGCCC
ACTGTACTTGCCCAGCCCGACATGGGGAAACCATGTTCCTATTTTCAGGG
ACGCGGGACTCGAGGTAAAGCGCTATCGGTACTTTGATCCTGAGACGAAC
GGCTTGGACTTCAAGGGCGTCCTGGAGGATGTTAACCAGGCGCCTGAGGG
CTCCATCTTCTTGCTCCATGCCTGTGCGCACAACCCTACGGGGGTGGACC
CCTCGGAAGAGCAGTGGAGGGAATTGTCCGCACTATTCAAAAGAAAGGGA
CATgccatcctcttcgatgCAGCGTATTTGGGTTTTGCGTCGGGCAATGT
TGAGAAGGACGCGTTTGCTCTGCGGCATTTCGCGATGGAGGGGCACAATT
TCTTGATGGCCCAGTCTTTCGCCAAGAACTTCGGTCTGTACGGTGAGCGA
GTAGGAACGCTTTCAGCGGTTTGCGCGAGCGCTGAAGAAGCGAAGCGGGT
TGAGTCTCAACTGAAAATCCTGATACGGCCCATGTACTCGAACCCGCCTA
TCTACGGCGCACGTTTGGTTGCGACTATCTTGACGGGTAGGTTCTTTAAT
GTCAGCACATGCTATAGGAACTCATTTTGCATTCCATTATACTTGTTTTT
TAGCACTTATACGCTTGAAATTGGATTGGATAACATTGTGGCAAAAACAT
CAAAGGCAATAGCAAATTTGTACTCAACCTTCTTTACCGTGTAATGTCCC
CTTTTAAATTTGCAGACCCGGAGCTAAAGCCACTTTTTTACAAGGATTGT
AAGGCCATGGCGGACCGTATCATAGAGATGCGCTCACTGCTGCGATACTC
GATGGAAAAATTAGGTTCTAAGCTTTCATGGCGGCATGTTACTGATCAGA
TCGGAATGTTCTGCTTTACAGGACTTCGTCCCGCTGAGGTGGCTGAGCTC
AAGGAGAAGTATCATATCTACATAACCGACGATGGCCGCATCTCCATCGC
AGGCCTCAACACGGCCAATGTGCAATACGTGGCCGCAAGCTTTCACGCCG
TGACATCCAAACGCTGAGCCCAACTAATTTACAAAAGGGTTAGGACTGGA
AATTCGGGAATATGTCTCTCAAGACTCAGGCACCATCCTCAAAAATACGA
GTTAACTCGATAACTGACGtcaaaagagggagagtgaAGTCGTCGGCAAA
TGTCATTCCATACTATTGTCTGGAAATTGAAAAACGACATATATATGGGG
CCACCCTTACCTAGGGCATTGTCGCATGTTTGTCATGTTGGGTTCAAGAG
AGTCAACGAGCCTGTCCTTGATATCATTGGACGTGTGCAAATAGAACACG
CATCAATAAAACTTAAGCCACGAGCATTTTCG

Coding sequence (CDS) from alignment at CM002461.1:528353..530484+

>rna3486 ID=rna3486|Name=rna3486|organism=Nannochloropsis gaditana|type=CDS|length=2634bp|location=Sequence derived from alignment at CM002461.1:528353..530484+ (Nannochloropsis gaditana)
ATGGCACATGCAAATTCACTGCTCCTGTTTCAGAAGGTAGCATTCTGTCA
CACGAATTTAGCCTTGCGCAAAATTTTACCATCTTTCGCTGCTTCGAATC
GTGCTGGCTCCACCTTTGCGAACATACCCTTAGGACCCCCGGATCCGATT
TTTGGTTTGACGGACGCTTTCAATAAAGACACATCCCCCAAGAAAGTGAG
TCTTGGGGTCGGGGCCTACCGGGGTGACAAGGGGAAACCTCACGTTTTGG
AATCTGTGCGTCGTGCTGAGAAAAAGGTATTAGAGGCGAAGATGAACCAT
GAATATGCAGGCATTCAAGGCGTAGGCGAATACGTGCAGTTAGCGCTCGA
ATTTGCATACGGCGCAGATTCAACCGCTTTGAAAGAAAAGCGTGTGGCAG
GTTCACAAACGATTTCCGGTACGGGGGCATGTCGCTTGGCGGGGGAGTTC
TACGCGCGCTTTATGGGCAAAGGCAGCCCACTGTACTTGCCCAGCCCGAC
ATGGGGAAACCATGTTCCTATTTTCAGGGACGCGGGACTCGAGGTAAAGC
GCTATCGGTACTTTGATCCTGAGACGAACGGCTTGGACTTCAAGGGCGTC
CTGGAGGATGTTAACCAGGCGCCTGAGGGCTCCATCTTCTTGCTCCATGC
CTGTGCGCACAACCCTACGGGGGTGGACCCCTCGGAAGAGCAGTGGAGGG
AATTGTCCGCACTATTCAAAAGAAAGGGACATgccatcctcttcgatgCA
GCGTATTTGGGTTTTGCGTCGGGCAATGTTGAGAAGGACGCGTTTGCTCT
GCGGCATTTCGCGATGGAGGGGCACAATTTCTTGATGGCCCAGTCTTTCG
CCAAGAACTTCGGTCTGTACGGTGAGCGAGTAGGAACGCTTTCAGCGGTT
TGCGCGAGCGCTGAAGAAGCGAAGCGGGTTGAGTCTCAACTGAAAATCCT
GATACGGCCCATGTACTCGAACCCGCCTATCTACGGCGCACGTTTGGTTG
CGACTATCTTGACGGACCCGGAGCTAAAGCCACTTTTTTACAAGGATTGT
AAGGCCATGGCGGACCGTATCATAGAGATGCGCTCACTGCTGCGATACTC
GATGGAAAAATTAGGTTCTAAGCTTTCATGGCGGCATGTTACTGATCAGA
TCGGAATGTTCTGCTTTACAGGACTTCGTCCCGCTGAGGTGGCTGAGCTC
AAGGAGAAGTATCATATCTACATAACCGACGATGGCCGCATCTCCATCGC
AGGCCTCAACACGGCCAATGTGCAATACGTGGCCGCAAGCTTTCACGCCG
TGACATCCAAACGCTGAATGGCACATGCAAATTCACTGCTCCTGTTTCAG
AAGGTAGCATTCTGTCACACGAATTTAGCCTTGCGCAAAATTTTACCATC
TTTCGCTGCTTCGAATCGTGCTGGCTCCACCTTTGCGAACATACCCTTAG
GACCCCCGGATCCGATTTTTGGTTTGACGGACGCTTTCAATAAAGACACA
TCCCCCAAGAAAGTGAGTCTTGGGGTCGGGGCCTACCGGGGTGACAAGGG
GAAACCTCACGTTTTGGAATCTGTGCGTCGTGCTGAGAAAAAGGTATTAG
AGGCGAAGATGAACCATGAATATGCAGGCATTCAAGGCGTAGGCGAATAC
GTGCAGTTAGCGCTCGAATTTGCATACGGCGCAGATTCAACCGCTTTGAA
AGAAAAGCGTGTGGCAGGTTCACAAACGATTTCCGGTACGGGGGCATGTC
GCTTGGCGGGGGAGTTCTACGCGCGCTTTATGGGCAAAGGCAGCCCACTG
TACTTGCCCAGCCCGACATGGGGAAACCATGTTCCTATTTTCAGGGACGC
GGGACTCGAGGTAAAGCGCTATCGGTACTTTGATCCTGAGACGAACGGCT
TGGACTTCAAGGGCGTCCTGGAGGATGTTAACCAGGCGCCTGAGGGCTCC
ATCTTCTTGCTCCATGCCTGTGCGCACAACCCTACGGGGGTGGACCCCTC
GGAAGAGCAGTGGAGGGAATTGTCCGCACTATTCAAAAGAAAGGGACATg
ccatcctcttcgatgCAGCGTATTTGGGTTTTGCGTCGGGCAATGTTGAG
AAGGACGCGTTTGCTCTGCGGCATTTCGCGATGGAGGGGCACAATTTCTT
GATGGCCCAGTCTTTCGCCAAGAACTTCGGTCTGTACGGTGAGCGAGTAG
GAACGCTTTCAGCGGTTTGCGCGAGCGCTGAAGAAGCGAAGCGGGTTGAG
TCTCAACTGAAAATCCTGATACGGCCCATGTACTCGAACCCGCCTATCTA
CGGCGCACGTTTGGTTGCGACTATCTTGACGGACCCGGAGCTAAAGCCAC
TTTTTTACAAGGATTGTAAGGCCATGGCGGACCGTATCATAGAGATGCGC
TCACTGCTGCGATACTCGATGGAAAAATTAGGTTCTAAGCTTTCATGGCG
GCATGTTACTGATCAGATCGGAATGTTCTGCTTTACAGGACTTCGTCCCG
CTGAGGTGGCTGAGCTCAAGGAGAAGTATCATATCTACATAACCGACGAT
GGCCGCATCTCCATCGCAGGCCTCAACACGGCCAATGTGCAATACGTGGC
CGCAAGCTTTCACGCCGTGACATCCAAACGCTGA

Synonyms

Publications