rna3480, rna3480 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3480
Unique Name	rna3480
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1812
Alignment location	CM002461.1:517297..520443 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100010g34.6107.mrna
Orig protein id	gnl\|cribi\|Naga_100010g34.6107
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:517297..520443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g34	gene3354	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3480	rna3480-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27137.1	cds3471	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:517297..520443+
coding sequence from alignment at CM002461.1:517297..520443+

mRNA sequence

>rna3480 ID=rna3480|Name=rna3480|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp
ATGCTTGACGCTCTTCAGCACACATTTCGGCATCACTTATCGGGGAGCTT
GGAGGGGCAATATACTGCCACAGTATACAGTTACATTAAGGGCGGAAACT
ACCATGGCGCAATTCCGATTCTGCGCGTGCAATTGCAGCGTTTACCGCGG
AGCCGGGCGGTACTTTCGCTGCTTGGGTTCTGTTACTATCACTCGCAGAA
CTACCCCTCTGCCATAAAAACATATGAAGCATTACTTCATCTGTGTCCTG
GCCAAGAAGAATACAAAATGTTTTACGCACAGGCGCTTTATCACGCTGGT
CTTTACACGGATGCTTGGCATGCCTCTGTGCGTGTGGAAGGGCCGCAATA
CTCACAGCGCAAGCTCTTACTGCAGAGTGCAATAAAATACGAATTGAACG
AACATCCAGTCTGCAAATCCCTGATGGCCCAGTACGCCGCGGATGAGCCT
ACTTCCCTAATCAATTTCGGAGCCATATTATATAAAGAGGGAAAATATGA
AAATGCTCGAGAAAAGTACATAGAAGCTCTCAGCATGCTAGATTATCGTG
CAGATCTGGCGTACAACATTGCACTTTGCTCGTATCAATCGAAACAGTTT
GGAGTGGCATTAAAATACATCACGGAAATAATAGAGCGCGGTGTTCAAGA
ACACCCGGAGCTGAGCGTCGGCAGTAACGCAGATGGTGTTGAGGTTCGTA
GCGTGGGAAACTCACCAGTCTTGCAAGACACTTACTTAATCGAGGCTTTT
AATCTAAAGGCCGCGATCAATTTTACTTTAAACAACATGGAGGGAACTAA
AGAGGCTTTGAACGACATGCCACCTCGTTTAGAGGAAGAGTTGGATCCTG
TCACTTTACACAACGAGGCTTTGGTACACATGCCTAATGACCCAATTCGA
GGTTTCCAGAAGCTGAATTACCTGTTAACACACCCACCATCTCCATTGGA
AACGTACGGTAATGTTCTTTTACTGCTCTGCAAATACCGATTTTACGACC
TGGCAGGAGACTTGTTAGACGAAGCAGGGCGTGCACCGCATACAAAGGTC
TCTTCTGACCTCAACGAATATTTGGAAGCCACAATTCTGAGTTCATGTTG
TCCTGAAGCGGCCTACAAGAAGTTTGATGGGCTTACCAACAAGCACATTG
ATCAGCTGCGAAAGCTGACGAAAGCGATACAAGACGCCCGCATTGCTCGT
GACAATGAAGCGATAAAACAGGCACTACGGGACTACGATGATGGGCTGGA
ACGCTACATTCCCGTGCTGATGGCTATGGCTCGTATCTACTGGGAGCGAT
TGAACTATCCCATGGTTGAGAAACTCTTCAGACAATCTGCTGAATTTTGC
AGCGAGCACGAAGTCTGGAAACTGAATGTGGCTCACGTCTTTTTTATGCA
GGAGAACAAATGGAAAGAATCTGTCCGATATTATGATCCCATTGTGCATA
AAAATGGAGGCGAACAGCTCTTAAATGAGCCACCTATCGTACTCGCCAAT
CTTTGCGTCTCATACATTATGACGAGCCAAAATGAGGCAGCTGAAGAGCT
CATGCGCAAGATTGAGAAGGAGGAAGAACGTGTCATTCTCTCGGATCAAC
AACCTATACACCATCTATGCATCGTGAATCTGGTGATAGGAAAACTCTAC
TGTGCAAAGGGAAATTTTGAGTTTGGAATCGCCCGCATTATCAAAAGTTT
GGAGCCGTATGATAAGAAGTTGAGCGCTGACACATGGTACGTGTGTTCAC
ATATGGCTTGCCCGCAATGTGGTAAGGCTGCCTTCGTTGGGGTTAAACTG
CGAACGATCTAG

protein sequence of rna3480

>rna3480-protein ID=rna3480-protein|Name=rna3480|organism=Nannochloropsis gaditana|type=polypeptide|length=957bp
MEASRRLSRLVRHLSSNCRSSTRTSDSTSLSIAFFTSLREQFPPTYSQTE
HIYRLRSILVPFLNHVESETHLQSWPPQEMQILLSVLRQTLDTSTSHDTV
SVSQATLEIFSNCSEILLRWAAVSIGQNSFLTRDVVHCAADLVSEAAFQA
LETWLARRGDLKGQISIQAKGNDVQAAGLLVRALHLWVFAGRLAACPLAE
VVDRVSRLFECPGSTTSLLENFGPSVWENISKALILELAEAEAVVLTAMD
VEYRLVRVCLRAVAKSPHLWVWAIWAKVLAELPEDNEELVDGVLWPADSA
GWRRESATQAVLEASDVWLEEVAAGVGAVALLSGRFEDHRLWKKFLGLLN
DVVGQKRRLDRDLKNMANPEEAWRTASVGTSLSLIHLGNSPFCSRSSDSE
SNVWAKEWGLCLKALLSLCLEETTAAGDLADFCGVNDGHEDYSQRPKVTA
LATILCPESLGPTENEICKAITALFKASDAQSQTEAFSFMRARTRELVLS
SSGVSWELLLVLRICALLCDPGSAAINSSEQAMYVLELLQTSAALAMTGP
ASSRPSSLPLSSAQERLSSSLHATLFQASYSLQTVLENDVEDAWLREARD
WIMTALRKRKTFSERTLGDLAILDLNTSETDSIPAEYSTASAISSLEGDR
EGFARKQEEQGIQQQQELCEEKREAFLTHLAFTMLIKTRRPASHKCVAEL
TRFLLQNVISPDFPSGNIAQNQVHACLRELISNPTFLAYRAGRMEHWDEA
RRRVVVAYVCATLEAYPKTVKFKDLTYCVGACIGATPTEADPAGQALVLY
YTYLMQKRALALWKSRAVDEEGTSVMDIATRNLISLLFQSLLICPLTVFE
TILRDVAESFVLKGLIGAPEKRVAVLELLKRIVFGEVEPVRQNIIAKWYL
ALLRDEEDLRFRETTYRSENAKENGPEGASNLPLDGAVRFCESIQFGEEK
LDEGHML

mRNA from alignment at CM002461.1:517297..520443+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3480 ID=rna3480|Name=rna3480|organism=Nannochloropsis gaditana|type=mRNA|length=3147bp|location=Sequence derived from alignment at CM002461.1:517297..520443+ (Nannochloropsis gaditana)
CGGCAGGCGGCGTGCTAGAAGAACTAAATCCTTGTAAACATTTCGTCATA
CTCCGTCACATTCCGGTACAAATACCACAGCATTTCTGTCATGGAAGCTT
CGCGGCGTTTGTCGCGATTGGTGAGGCACCTGTCATCGAACTGCAGGTCA
TCAACAAGGACTTCCGATTCTACTTCCCTATCAATTGCTTTTTTCACGAG
CTTACGGGAACAATTTCCGCCTACATATAGCCAGACTGAGCACATATATC
GACTGCGTAGCATCTTGGTGCCCTTTTTGAACCATGTAGAAAGTGAGACA
CATCTCCAGTCTTGGCCACCGCAAGAAATGCAGATCCTGTTATCTGTTCT
TCGTCAAACTCTTGACACATCCACCAGTCATGATACTGTCAGCGTTTCAC
AGGCCACGCTTGAAATATTTTCGAACTGCTCTGAAATATTGTTGCGATGG
GCTGCTGTAAGCATAGGTCAAAACTCATTTTTGACGAGAGACGTGGTGCA
CTGCGCCGCCGACTTGGTAAGCGAGGCGGCATTCCAAGCTTTGGAAACGT
GGCTGGCCCGCAGAGGTGATCTTAAAGGCCAAATTTCCATACAAGCAAAA
GGGAATGATGTGCAGGCTGCAGGTCTGCTAGTGAGGGCGTTGCACCTTTG
GGTTTTCGCAGGACGGCTTGCCGCGTGTCCTTTGGCGGAAGTAGTAGACC
GCGTGAGCCGACTTTTCGAATGCCCGGGCTCTACGACAAGTTTGCTTGAA
AATTTTGGACCTTCTGTTTGGGAAAATATTTCGAAGGCACTAATACTAGA
ACTGGCGGAGGCAGAAGCGGTTGTCCTCACGGCCATGGACGTCGAATACC
GTCTGGTCCGAGTGTGTCTTCGGGCAGTGGCGAAGAGCCCGCATCTATGG
GTGTGGGCCATTTGGGCTAAAGTATTGGCTGAGCTCCCTGAAGATAACGA
GGAACTCGTCGATGGCGTCCTCTGGCCAGCTGATTCGGCGGGCTGGAGGC
GCGAGTCTGCTACTCAAGCGGTCCTGGAGGCTTCGGACGTGTGGTTAGAG
GAAGTAGCCGCTGGTGTCGGGGCCGTAGCACTTTTGTCCGGTCGATTTGA
GGACCACCGTTTATGGAAAAAGTTTCTGGGTTTGTTGAATGATGTGGTTG
GGCAAAAGAGGCGGTTGGACCGAGACCTGAAAAATATGGCCAACCCGGAA
GAGGCATGGCGCACGGCGAGCGTGGGCACCTCCCTTTCGTTGATACATCT
TGGAAACTCGCCATTCTGCTCGCGCTCTTCCGACAGCGAGTCAAATGTGT
GGGCAAAAGAGTGGGGGCTGTGTCTTAAGGCCTTATTATCGCTATGCCTC
GAGGAGACGACAGCAGCAGGGGATTTGGCAGATTTTTGCGGCGTAAATGA
TGGCCACGAGGACTATTCGCAGCGACCAAAGGTAACCGCACTTGCGACAA
TACTGTGTCCTGAATCTTTGGGTCCAACTGAGAACGAGATATGCAAGGCT
ATCACGGCGCTCTTTAAGGCCTCCGACGCACAAAGTCAAACGGAGGCATT
CTCATTCATGCGCGCCCGGACGCGCGAATTGGTACTGTCGAGCAGCGGTG
TCTCTTGGGAGCTGCTTCTTGTGTTGCGAATTTGCGCACTATTATGTGAC
CCGGGATCTGCGGCAATTAACTCATCAGAGCAAGCGATGTATGTCTTGGA
GCTGCTTCAAACCTCGGCTGCGCTGGCGATGACAGGACCCGCCTCATCGC
GACCGTCATCGTTACCGCTCTCGTCTGCGCAGGAACGTCTTAGTTCTTCG
CTGCATGCTACGCTTTTCCAAGCATCATATAGTTTGCAGACGGTTTTGGA
GAACGATGTTGAAGATGCATGGCTCAGAGAAGCTCGCGATTGGATTATGA
CTGCCCTAAGGAAGCGGAAAACATTTTCCGAGCGAACGCTTGGGGACTTG
GCAATTCTGGACTTGAATACAAGCGAAACAGACAGTATTCCCGCTGAATA
TTCAACTGCTTCCGCTATATCATCCCTCGAAGGAGATCGAGAAGGGTTTG
CAAGGAAAcaagaagaacaaggaattcagcagcagcaagaacTATGCGAG
GAAAAGCGAGAGGCCTTTCTGACTCATTTGGCTTTCACCATGCTCATCAA
GACCCGACGACCAGCTTCCCACAAGTGTGTGGCGGAGCTGACGCGGTTCT
TGTTACAAAATGTGATTAGCCCTGATTTCCCTTCTGGAAATATAGCTCAA
AATCAGGTTCATGCTTGCCTGCGCGAACTTATCTCCAATCCCACTTTCTT
GGCTTATCGGGCGGGTCGCATGGAACACTGGGACGAGGCGCGCAGGCGTG
TAGTGGTAGCTTATGTCTGTGCTACCCTTGAGGCATATCCAAAGACTGTA
AAATTTAAGGACCTGACCTATTGTGTCGGAGCCTGTATTGGTGCGACTCC
AACTGAGGCAGATCCCGCCGGACAGGCCCTTGTTCTCTACTACACCTATC
TCATGCAAAAGCGGGCGCTCGCTTTGTGGAAATCAAGGGCagtggacgaa
gaaggcACGAGCGTAATGGATATCGCAACCCGAAACCTAATAAGTCTACT
CTTTCAATCCCTTTTAATATGCCCTTTGACGGTTTTTGAAACCATACTTC
GAGACGTGGCCGAAAGCTTCGTACTCAAAGGTTTAATAGGCGCGCCTGAG
AAACGAGTGGCGGTGTTGGAACTGCTGAAACGCATTGTATTCGGTGAGGT
CGAACCTGTGAGACAAAATATCATAGCGAAATGGTACTTAGCTCTTTTgc
gagatgaggaggatctgCGGTTCCGAGAAACCACATATCGATCAGAGAAC
GCAAAAGAAAATGGTCCGGAAGGCGCATCGAACCTACCACTGGATGGAGC
GGTGCGATTTTGTGAGTCTATCCAATttggggaagaaaaattggATGAGG
GGCACATGTTATAATATGTGCACACGCACTCTTATAGTTGCGTACTTAAT
TATGTCGATGTACAAAACCACACGTGTTTGCATgacgcatttttttttca
ttgaTGGACTTTTCAGGAGGGAATGGGTTGCTTTATGCATTGACGCAAAA
ACATTCTCACTGCCTCAAAATTACTCAATCCAATGCGTCGATGAAAT

Coding sequence (CDS) from alignment at CM002461.1:517297..520443+

>rna3480 ID=rna3480|Name=rna3480|organism=Nannochloropsis gaditana|type=CDS|length=2874bp|location=Sequence derived from alignment at CM002461.1:517297..520443+ (Nannochloropsis gaditana)
ATGGAAGCTTCGCGGCGTTTGTCGCGATTGGTGAGGCACCTGTCATCGAA
CTGCAGGTCATCAACAAGGACTTCCGATTCTACTTCCCTATCAATTGCTT
TTTTCACGAGCTTACGGGAACAATTTCCGCCTACATATAGCCAGACTGAG
CACATATATCGACTGCGTAGCATCTTGGTGCCCTTTTTGAACCATGTAGA
AAGTGAGACACATCTCCAGTCTTGGCCACCGCAAGAAATGCAGATCCTGT
TATCTGTTCTTCGTCAAACTCTTGACACATCCACCAGTCATGATACTGTC
AGCGTTTCACAGGCCACGCTTGAAATATTTTCGAACTGCTCTGAAATATT
GTTGCGATGGGCTGCTGTAAGCATAGGTCAAAACTCATTTTTGACGAGAG
ACGTGGTGCACTGCGCCGCCGACTTGGTAAGCGAGGCGGCATTCCAAGCT
TTGGAAACGTGGCTGGCCCGCAGAGGTGATCTTAAAGGCCAAATTTCCAT
ACAAGCAAAAGGGAATGATGTGCAGGCTGCAGGTCTGCTAGTGAGGGCGT
TGCACCTTTGGGTTTTCGCAGGACGGCTTGCCGCGTGTCCTTTGGCGGAA
GTAGTAGACCGCGTGAGCCGACTTTTCGAATGCCCGGGCTCTACGACAAG
TTTGCTTGAAAATTTTGGACCTTCTGTTTGGGAAAATATTTCGAAGGCAC
TAATACTAGAACTGGCGGAGGCAGAAGCGGTTGTCCTCACGGCCATGGAC
GTCGAATACCGTCTGGTCCGAGTGTGTCTTCGGGCAGTGGCGAAGAGCCC
GCATCTATGGGTGTGGGCCATTTGGGCTAAAGTATTGGCTGAGCTCCCTG
AAGATAACGAGGAACTCGTCGATGGCGTCCTCTGGCCAGCTGATTCGGCG
GGCTGGAGGCGCGAGTCTGCTACTCAAGCGGTCCTGGAGGCTTCGGACGT
GTGGTTAGAGGAAGTAGCCGCTGGTGTCGGGGCCGTAGCACTTTTGTCCG
GTCGATTTGAGGACCACCGTTTATGGAAAAAGTTTCTGGGTTTGTTGAAT
GATGTGGTTGGGCAAAAGAGGCGGTTGGACCGAGACCTGAAAAATATGGC
CAACCCGGAAGAGGCATGGCGCACGGCGAGCGTGGGCACCTCCCTTTCGT
TGATACATCTTGGAAACTCGCCATTCTGCTCGCGCTCTTCCGACAGCGAG
TCAAATGTGTGGGCAAAAGAGTGGGGGCTGTGTCTTAAGGCCTTATTATC
GCTATGCCTCGAGGAGACGACAGCAGCAGGGGATTTGGCAGATTTTTGCG
GCGTAAATGATGGCCACGAGGACTATTCGCAGCGACCAAAGGTAACCGCA
CTTGCGACAATACTGTGTCCTGAATCTTTGGGTCCAACTGAGAACGAGAT
ATGCAAGGCTATCACGGCGCTCTTTAAGGCCTCCGACGCACAAAGTCAAA
CGGAGGCATTCTCATTCATGCGCGCCCGGACGCGCGAATTGGTACTGTCG
AGCAGCGGTGTCTCTTGGGAGCTGCTTCTTGTGTTGCGAATTTGCGCACT
ATTATGTGACCCGGGATCTGCGGCAATTAACTCATCAGAGCAAGCGATGT
ATGTCTTGGAGCTGCTTCAAACCTCGGCTGCGCTGGCGATGACAGGACCC
GCCTCATCGCGACCGTCATCGTTACCGCTCTCGTCTGCGCAGGAACGTCT
TAGTTCTTCGCTGCATGCTACGCTTTTCCAAGCATCATATAGTTTGCAGA
CGGTTTTGGAGAACGATGTTGAAGATGCATGGCTCAGAGAAGCTCGCGAT
TGGATTATGACTGCCCTAAGGAAGCGGAAAACATTTTCCGAGCGAACGCT
TGGGGACTTGGCAATTCTGGACTTGAATACAAGCGAAACAGACAGTATTC
CCGCTGAATATTCAACTGCTTCCGCTATATCATCCCTCGAAGGAGATCGA
GAAGGGTTTGCAAGGAAAcaagaagaacaaggaattcagcagcagcaaga
acTATGCGAGGAAAAGCGAGAGGCCTTTCTGACTCATTTGGCTTTCACCA
TGCTCATCAAGACCCGACGACCAGCTTCCCACAAGTGTGTGGCGGAGCTG
ACGCGGTTCTTGTTACAAAATGTGATTAGCCCTGATTTCCCTTCTGGAAA
TATAGCTCAAAATCAGGTTCATGCTTGCCTGCGCGAACTTATCTCCAATC
CCACTTTCTTGGCTTATCGGGCGGGTCGCATGGAACACTGGGACGAGGCG
CGCAGGCGTGTAGTGGTAGCTTATGTCTGTGCTACCCTTGAGGCATATCC
AAAGACTGTAAAATTTAAGGACCTGACCTATTGTGTCGGAGCCTGTATTG
GTGCGACTCCAACTGAGGCAGATCCCGCCGGACAGGCCCTTGTTCTCTAC
TACACCTATCTCATGCAAAAGCGGGCGCTCGCTTTGTGGAAATCAAGGGC
agtggacgaagaaggcACGAGCGTAATGGATATCGCAACCCGAAACCTAA
TAAGTCTACTCTTTCAATCCCTTTTAATATGCCCTTTGACGGTTTTTGAA
ACCATACTTCGAGACGTGGCCGAAAGCTTCGTACTCAAAGGTTTAATAGG
CGCGCCTGAGAAACGAGTGGCGGTGTTGGAACTGCTGAAACGCATTGTAT
TCGGTGAGGTCGAACCTGTGAGACAAAATATCATAGCGAAATGGTACTTA
GCTCTTTTgcgagatgaggaggatctgCGGTTCCGAGAAACCACATATCG
ATCAGAGAACGCAAAAGAAAATGGTCCGGAAGGCGCATCGAACCTACCAC
TGGATGGAGCGGTGCGATTTTGTGAGTCTATCCAATttggggaagaaaaa
ttggATGAGGGGCACATGTTATAA

Synonyms

Publications