rna348, rna348 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna348
Unique Name	rna348
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	879
Alignment location	CM002455.1:855277..856720 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g148.1771.mrna
Orig protein id	gnl\|cribi\|Naga_100003g148.1771
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:855277..856720 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g148	gene335	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna348	rna348-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30254.1	cds348	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:855277..856720+
coding sequence from alignment at CM002455.1:855277..856720+

mRNA sequence

>rna348 ID=rna348|Name=rna348|organism=Nannochloropsis gaditana|type=mRNA|length=879bp
ATGAACAGACATATTTTGGTGCGAACAGTGATATTTTTATGTCTGATTCA
CCTTCTTAATTCTTTCTGCCCAGTATCCTTGCACCGGGAGTCAATCTACT
CTGTGCGGTTTAAATTTCGGTCAATTTGGGGGGTATACATCAGTCCACCT
TTTGCTCGACACAGATCGTGGAACCCATTTCATAAGACTGTAGTGTCGAG
TACTTCGAACAATGCGATAAATAGTAAGCATGGAAGCAAATGTCAAGCTG
TGACTCGCTTAGAGGTAAAATTTTTGACAAGTAATCCATTGAAGACAAGG
GAGGTACAGGCTTTGTTAGCGGAAGGGGGCCTCCAAGTGCCTTTCGACAT
TGTGACATTGGACATTGAGTTACCGGAACTACAAGAGACACCACTCGTGA
TCGCAATTGAGAAGACACGGCTTGCTGCGCAAGCCGTACAGGGTCCTGTT
CTCGTTGAGGATACCTGCCTCTGCTTCGACGCGCTTGGCGATTTGCCGGG
GCCGTACATTAAGCACTTTTTGGATCAACTCGGTCCTGAAGGCCTATTTA
GAATGATAGAAAATTACGAAGATCACTCAGCGAAAGCCGTTTGCAATGTG
GGTTTCAGCCCAGGACCAGGGTGTCAACCACTGATCTTTACCGGAATCAC
GTATGGAGAAATAGTCCGGCCTGAAGAAGGGGATGACGGTTTTGGATGGG
ACACATGTTTCGCTCCCTCTGGCTTCAATTCGACGTTCTCAAAGATGACT
GTAGAGCAAAAGAATGCGATATCGCACCGGGAAGCCAAACAGGAGAAGCC
ATATTTCTCTAATCTAGTAGCGCGAGTGCACATGAAAAAAAAGCGGCGCA
GAATACCTATGCCTCTCCACTGTAGTTAA

protein sequence of rna348

>rna348-protein ID=rna348-protein|Name=rna348|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MISLLAEFPSSQASTDESLPGDSRHNFNVWPEILGHFISQACLAFTQRSH
FEPAEGMAHGSRCLTSAFRHFRSPYEMTVGARWSPGGCHRKLSTEAESTS
LTSNKGSSFFQRLSSFLAGVGVTSLVGYFFLIQDVKRSTDSVHDLLRVVH
QASHKRTEACDGVRVSAKEKKSDLSQEDLHREHKI

mRNA from alignment at CM002455.1:855277..856720+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna348 ID=rna348|Name=rna348|organism=Nannochloropsis gaditana|type=mRNA|length=1444bp|location=Sequence derived from alignment at CM002455.1:855277..856720+ (Nannochloropsis gaditana)
ATGATTTCGCTTCTCGCCGAGTTTCCCTCATCACAGGCTTCTACGGATGA
ATCACTGCCCGGTGATTCAAGGCACAATTTCAACGTGTGGCCGGAAATCT
TAGGTCATTTTATCTCACAGGCTTGTCTCGCCTTCACCCAACGCTCACAC
TTCGAGCCAGCGGAAGGGTAACCAAAAGAAAGCAACCTTGAAGGGGCCGC
AAGCCTCCTTACTGCTAGTCAGCACTCAAGCGAGGCAATCCGACATGAGA
ATAATTATGAACCTTTATTCCCTAACATGTGTGCATCACTTtgtctcttc
tttttgcatGGTTTAGGATGGCTCACGGTAGCCGTTGCCTGACTTCTGCC
TTCCGTCATTTTCGCTCTCCTTATGAGATGACGGTGGGAGCTCGGTGGTC
GCCCGGCGGCTGCCATAGAAAGCTGTCCACAGAGGCAGAATCAACCTCGC
TGACGTCGAACAAAGGTGCGCTGGGGATGGATTTGTTGAGGTCTGCGGTT
AGATGCCTATCTTCATGCTCTCGTTTAAAGATAAGTTTCAGTAATACCAC
TTGTTTCCTTGTAGATCTTTTACTACTTGTAGCCGGGTGAAGAAAGGATA
TTGAAGCAGAGGCTGGCAGGGTGTTTATTTGAAAAGCTACTTCTCAGATA
CCGAAAAGTACATGCAACTCAATAAATTCACCGAAAAATTAAATAGGttc
atccttcttccagcGGTTGTCTTCTTTTCTAGCTGGCGTAGGGGTTACAT
CGTTGGTGGGCTACTTTTTTTTAATTCAAGACGTCAAGCGGTACGTGTCC
AAGAGCGTAGGCTCTTATCTAGTGAAGACATCTTGACTTCTTTTAGCGTA
TATTGTACATAGTGTCTTTGTTGGACAAGAGTTTGTCATTATGGCATGCC
TTCTCTGTACGGGTCTCCGACAGTACCTACTCTTCTCATGGAGGCTAAAT
CTCCGAGCAGGGGAGATTCGTATGTAACATGAATTATTTTAAGTTTTATA
TAGTGTAGGGTTTGTGTCGATTTTTAAAAATTACTTTTATCCTTTTAAAT
AATTCAATGCGGGCAGACGCTCTCGACACTCCCCCCCTGCTAAACAAAGA
CATGTGCATTATGAATGTCCATGATGCAATTGTCGACGTATGTATAGCAA
ATCGAGGTTTAACAGCATTCTCCCCCCAGAATTCCCCCTCTCACAAGGTT
TGTTCTgcatccttcctttcttccatgAAACATTATGCATGCAACAGCTC
GACTGATTCCGTCCAGTTGGGGCTGAATGACATCACGAAGAGACTTGAGG
CTCTAGAAAAAAAGTGACCTTCTGAGAGTAGTGCATCAAGCCTCACATAA
GCGGACAGAAGCGTGCGACGGTGTTCGAGTTTcagcaaaagaaaagaagt
CAGACCTCTCACAGGAGGACCTCCACCGGGAACATAAAATTTGA

Coding sequence (CDS) from alignment at CM002455.1:855277..856720+

>rna348 ID=rna348|Name=rna348|organism=Nannochloropsis gaditana|type=CDS|length=2790bp|location=Sequence derived from alignment at CM002455.1:855277..856720+ (Nannochloropsis gaditana)
ATGATTTCGCTTCTCGCCGAGTTTCCCTCATCACAGGCTTCTACGGATGA
ATCACTGCCCGGTGATTCAAGGCACAATTTCAACGTGTGGCCGGAAATCT
TAGGTCATTTTATCTCACAGGCTTGTCTCGCCTTCACCCAACGCTCACAC
TTCGAGCCAGCGGAAGGGATGGCTCACGGTAGCCGTTGCCTGACTTCTGC
CTTCCGTCATTTTCGCTCTCCTTATGAGATGACGGTGGGAGCTCGGTGGT
CGCCCGGCGGCTGCCATAGAAAGCTGTCCACAGAGGCAGAATCAACCTCG
CTGACGTCGAACAAAGGttcatccttcttccagcGGTTGTCTTCTTTTCT
AGCTGGCGTAGGGGTTACATCGTTGGTGGGCTACTTTTTTTTAATTCAAG
ACGTCAAGCGCTCGACTGATTCCGTCCATGACCTTCTGAGAGTAGTGCAT
CAAGCCTCACATAAGCGGACAGAAGCGTGCGACGGTGTTCGAGTTTcagc
aaaagaaaagaagtCAGACCTCTCACAGGAGGACCTCCACCGGGAACATA
AAATTTGAATGATTTCGCTTCTCGCCGAGTTTCCCTCATCACAGGCTTCT
ACGGATGAATCACTGCCCGGTGATTCAAGGCACAATTTCAACGTGTGGCC
GGAAATCTTAGGTCATTTTATCTCACAGGCTTGTCTCGCCTTCACCCAAC
GCTCACACTTCGAGCCAGCGGAAGGGATGGCTCACGGTAGCCGTTGCCTG
ACTTCTGCCTTCCGTCATTTTCGCTCTCCTTATGAGATGACGGTGGGAGC
TCGGTGGTCGCCCGGCGGCTGCCATAGAAAGCTGTCCACAGAGGCAGAAT
CAACCTCGCTGACGTCGAACAAAGGttcatccttcttccagcGGTTGTCT
TCTTTTCTAGCTGGCGTAGGGGTTACATCGTTGGTGGGCTACTTTTTTTT
AATTCAAGACGTCAAGCGCTCGACTGATTCCGTCCATGACCTTCTGAGAG
TAGTGCATCAAGCCTCACATAAGCGGACAGAAGCGTGCGACGGTGTTCGA
GTTTcagcaaaagaaaagaagtCAGACCTCTCACAGGAGGACCTCCACCG
GGAACATAAAATTTGAATGATTTCGCTTCTCGCCGAGTTTCCCTCATCAC
AGGCTTCTACGGATGAATCACTGCCCGGTGATTCAAGGCACAATTTCAAC
GTGTGGCCGGAAATCTTAGGTCATTTTATCTCACAGGCTTGTCTCGCCTT
CACCCAACGCTCACACTTCGAGCCAGCGGAAGGGATGGCTCACGGTAGCC
GTTGCCTGACTTCTGCCTTCCGTCATTTTCGCTCTCCTTATGAGATGACG
GTGGGAGCTCGGTGGTCGCCCGGCGGCTGCCATAGAAAGCTGTCCACAGA
GGCAGAATCAACCTCGCTGACGTCGAACAAAGGttcatccttcttccagc
GGTTGTCTTCTTTTCTAGCTGGCGTAGGGGTTACATCGTTGGTGGGCTAC
TTTTTTTTAATTCAAGACGTCAAGCGCTCGACTGATTCCGTCCATGACCT
TCTGAGAGTAGTGCATCAAGCCTCACATAAGCGGACAGAAGCGTGCGACG
GTGTTCGAGTTTcagcaaaagaaaagaagtCAGACCTCTCACAGGAGGAC
CTCCACCGGGAACATAAAATTTGAATGATTTCGCTTCTCGCCGAGTTTCC
CTCATCACAGGCTTCTACGGATGAATCACTGCCCGGTGATTCAAGGCACA
ATTTCAACGTGTGGCCGGAAATCTTAGGTCATTTTATCTCACAGGCTTGT
CTCGCCTTCACCCAACGCTCACACTTCGAGCCAGCGGAAGGGATGGCTCA
CGGTAGCCGTTGCCTGACTTCTGCCTTCCGTCATTTTCGCTCTCCTTATG
AGATGACGGTGGGAGCTCGGTGGTCGCCCGGCGGCTGCCATAGAAAGCTG
TCCACAGAGGCAGAATCAACCTCGCTGACGTCGAACAAAGGttcatcctt
cttccagcGGTTGTCTTCTTTTCTAGCTGGCGTAGGGGTTACATCGTTGG
TGGGCTACTTTTTTTTAATTCAAGACGTCAAGCGCTCGACTGATTCCGTC
CATGACCTTCTGAGAGTAGTGCATCAAGCCTCACATAAGCGGACAGAAGC
GTGCGACGGTGTTCGAGTTTcagcaaaagaaaagaagtCAGACCTCTCAC
AGGAGGACCTCCACCGGGAACATAAAATTTGAATGATTTCGCTTCTCGCC
GAGTTTCCCTCATCACAGGCTTCTACGGATGAATCACTGCCCGGTGATTC
AAGGCACAATTTCAACGTGTGGCCGGAAATCTTAGGTCATTTTATCTCAC
AGGCTTGTCTCGCCTTCACCCAACGCTCACACTTCGAGCCAGCGGAAGGG
ATGGCTCACGGTAGCCGTTGCCTGACTTCTGCCTTCCGTCATTTTCGCTC
TCCTTATGAGATGACGGTGGGAGCTCGGTGGTCGCCCGGCGGCTGCCATA
GAAAGCTGTCCACAGAGGCAGAATCAACCTCGCTGACGTCGAACAAAGGt
tcatccttcttccagcGGTTGTCTTCTTTTCTAGCTGGCGTAGGGGTTAC
ATCGTTGGTGGGCTACTTTTTTTTAATTCAAGACGTCAAGCGCTCGACTG
ATTCCGTCCATGACCTTCTGAGAGTAGTGCATCAAGCCTCACATAAGCGG
ACAGAAGCGTGCGACGGTGTTCGAGTTTcagcaaaagaaaagaagtCAGA
CCTCTCACAGGAGGACCTCCACCGGGAACATAAAATTTGA

Synonyms

Publications