rna3469, rna3469 (mRNA) Nannochloropsis gaditana

Overview
Namerna3469
Unique Namerna3469
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1332
Alignment locationCM002461.1:488831..491100 -

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Properties
Property NameValue
Productnucleoredoxin
Orig transcript idgnl|cribi|Naga_100010g22.6175.mrna
Orig protein idgnl|cribi|Naga_100010g22.6175
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:488831..491100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g22gene3343Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27205.1cds3460Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3469rna3469-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3469 ID=rna3469|Name=rna3469|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp
ACCTCCTCCTCGTCCCAGAAACCCAGCATTTTGTACATTTGAGAAAGCAG
AAGCGATAAACGATCCTTTGTGAAAGTAGGAGAAAGATATCCCGAGAAAT
AATGCAAATTAAGCCAGGGCAGAGTCCTAGCACGGGGTACGTACGCTTAA
GTAGTATCCAACCCATTCCCCTACGACATCCTTACGTGTTGTACTCAGCA
TCAATACTGCAAAGACCAAGGAGGTTCGTCGTTTTGGGCCCACCATCTGC
TGATAAACCAGGATCTTACCAAAGGTCACCTGTGATCGTGTGGTGTAAGC
AATTGAGGACCGCCATGTTGCCTCTCGCATATCGCCTTCCTCAGACGAAA
TCAGGCACGGAGTAATCAACGGGCGATGACGCTCGAGCCTTCGGGGACAA
TATCCGCCCGAGAATGCCTCTGACCACCTCAGTTCTCTCATGAAAGGCTC
TCAACTTCATTCACATGACTCTGCAGACGAGGGGATCGTCGCCTTCAAGT
CTATCAACTCGCAAGCCAAGCCGTAGCCGATGACGGGACCCCGACTGCCT
CTGTTGAGGAAGCAGTGCCTTTCTGTAGCCGGCCTTCTGGTGCTTATTGC
CCTCACGCAAGCCTTTGTCCCTACATCTGTTTCAAAGATTAAGTCAGTGC
GTTACGTAAGTGGTCCCAAGGGCAGGCCCCTCATGATGGCAGGGGAGAGT
GGTGTGCTCAAAGTGAGTGGGGAAGAACTCGAGAAGCAATTAGCGGAAGT
GGGAAGCCCGGTTCTCCTGGATGTGTACGCACAGTGGTGCGGCCCCTGTC
AGATCCTAGCGGGGGAGCTCGATAAGGTTAAGGGTTTGTACAAGGACAAG
TTGAGAGTGTTAAAAGTAGACTCGGACGAGGAACCCCGCATCGCTTCTGC
CCTGAAGGTGTACGGCCTGCCCACCATTTTCTTCATCCGAGAAGGCCAGC
TGATTCACCGTGTGGAGGGTGCAATGCCTGCTTCTGAGCTGACAAAATTG
GTGAATCATTACTGTTTCGGGGCGCCGGAAGAGGAGATTAAGGATGTCTA
ACTGGGTCAGCAAGACTTTGGAGGAGGGGCAAGAAGGGAATGATGGATTC
CGCACGGGAAGGGGACACCGTAGATTGTAATACACGTGACGCAAACGTTA
CTGTACATATGGATGGAGGATGATGGAGGTCGAGCGGTTGTCCCTCGGTC
ACGCGAGGAGGGCGGGAGCCGGATAACGGCAAGAAGGGGGAAAGACGGGC
TTGGGGCCCACGGAAAGCATGGTGGTATGGCGGGAATAGCGAAAACAACA
AATCGATAGCCCGAATCTGAGGCCCACATTCG
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protein sequence of rna3469

>rna3469-protein ID=rna3469-protein|Name=rna3469|organism=Nannochloropsis gaditana|type=polypeptide|length=630bp
MRTLSLYLLLGIILHAVEASRFSLSPPAFFNRFSDFEEEYEEEEEGPGLG
GLPLKALVGASVAAVGGVGVSFARRAIKAKQQRVSTPKQQRSHLPSSSTV
GSSTPSFVESGIKGGKSDPKIARGTTTMAPPSSTEADGSGEEAEKEPEEV
FDVEPVVELDESKLSEGQKEHPYAKLLGPKLVKYDSKQGKLVEVATADVL
DGKVTSLFFHAQQVEQMLEKMKAGKVLPGLKEVYAEQRAKGNNFEVVFMS
LPDGQEGRFQAYMKDMPWYAMPFNATERLRDAYKAFKIQNLPAAVVVDEQ
AQVLNEKGFTYMLIDKEGFPWHPKTLSQMLGSTFLSKDRSVPAAEVAKKK
VLALYFSANWCKPCQEFTPKLVEAYEKVRAQGKDLEVVFVSMDETEEKFK
EYFAKMPWLSLPYEDKTARSLLMTELEVKGLPTLVLLDEEREVITSKGRD
FVLKDPEGAKFPWYPQPLNEISYSFDGIAQKPSLVLFMEGASADAQAKMV
AAMQAVAEEFTAKNKLAPEDAAHRFNFYYAQEISTFSKALRSIAGLEQLN
PKDKFLKSKAEANKPRLVLLDIGKEVCHVSPAEDAGPVEETTIRELLQAR
VEGTLPMETFRQPEPEEAAASASAKGAGTV
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mRNA from alignment at CM002461.1:488831..491100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3469 ID=rna3469|Name=rna3469|organism=Nannochloropsis gaditana|type=mRNA|length=2270bp|location=Sequence derived from alignment at CM002461.1:488831..491100- (Nannochloropsis gaditana)
TTGTTGCTGTTGCTGTTCTACGATATGATACTACTCAAATTTCACCCCCT
CCTTTCACATGTGCACAGACAATGAGGACTCTCAGCTTGTACCTACTTCT
TGGAATCATTTTACACGCTGTTGAGGCGTCGCGATTTTCTCTTAGCCCTC
CGGCATTCTTCAATCGGTTTTCAGATTTTGAGGAGGAGTATGAGGAGGAG
GAGGAGGGTCCTGGGCTGGGGGGTTTGCCCTTGAAAGCCTTGGTGGGCGC
AAGTGTCGCAGCAGTTGGAGGTGTTGGTGTATCGTTTGCTCGACGAGCAA
TCAAGGCCAAGCAGCAGCGCGTGTCGACACCGAAGCAACAACGCTCTCAT
CTTCCAAGCAGCAGCACCGTTGGAAGCAGCACTCCGTCATTTGTCGAAAG
CGGCATCAAGGGTGGCAAGAGCGATCCCAAAATAGCACGCGGTACAACAA
CAATGGCACCACCATCGTCTACAGAGGCTGATGGCAGCGGCGAGGAAGCT
GAGAAAGAGCCTGAGGAGGTTTTCGATGTAGAGCCCGTGGTCGAGCTTGA
CGAGTCCAAGCTGTCGGAGGGCCAGAAGGAGCATCCCTACGCAAAGCTGC
TGGGACCGAAGCTTGTCAAATATGATTCCAAGCAAGGGAAACTTGTGGAA
GTGGCAACGGCGGACGTGTTGGACGGGAAGGTGACGTCTCTTTTTTTCCA
CGCTCAGCAGGTGGAGCAGATGCTGGAGAAGATGAAGGCGGGAAAGGTCC
TTCCTGGACTCAAGGAGGTCTACGCCGAGCAGCGGGCGAAAGGCAACAAC
TTTGAGGTGGTGTTCATGTCGCTGCCTGATGGCCAGGAGGGGCGCTTTCA
AGCGTACATGAAGGACATGCCCTGGTATGCCATGCCCTTTAACGCTACCG
AGCGCCTGCGCGACGCGTACAAGGCCTTCAAGATCCAGAACCTCCCTGCC
GCAGTGGTGGTGGACGAGCAGGCTCAGGTTTTGAATGAGAAGGGGTTTAC
GTACATGCTTATCGACAAAGAGGGGTTCCCGTGGCACCCGAAAACTCTCT
CCCAGATGCTCGGCTCTACCTTCCTTAGCAAGGACCGGAGCGTGCCAGCC
GCCGAGGTTGCGAAGAAAAAAGTTCTTGCCCTTTACTTCTCGGCTAACTG
GTGTAAGCCATGCCAAGAGTTCACGCCCAAGCTGGTGGAGGCCTACGAGA
AAGTTAGGGCGCAGGGGAAGGACTTGGAGGTGGTGTTCGTCTCCATGGAC
GAGACGGAGGAGAAATTTAAGGAGTACTTCGCGAAGATGCCATGGCTGAG
CCTGCCCTACGAGGATAAGACGGCTCGCTCGCTCCTCATGACGGAGCTGG
AGGTGAAGGGGCTGCCGACGCTAGTGTTGCTGGACGAGGAGCGGGAGGTA
ATCACAAGCAAGGGCCGAGACTTCGTCCTCAAAGACCCGGAGGGCGCCAA
GTTTCCCTGGTACCCGCAGCCCTTGAACGAGATTTCCTATTCTTTCGACG
GTATCGCGCAGAAGCCCTCCTTGGTTCTCTTCATGGAGGGCGCATCGGCC
GATGCCCAGGCGAAGATGGTGGCGGCCATGCAAGCTGTGGCCGAGGAATT
CACTGCCAAGAACAAGCTGGCGCCTGAGGACGCGGCGCACCGGTTCAATT
TCTATTATGCCCAGGAGATCTCAACATTCTCTAAGGCCCTCCGCTCCATC
GCCGGGTTGGAGCAGCTGAATCCGAAGGACAAATTTCTGAAGTCCAAGGC
GGAGGCCAACAAGCCGCGGCTGGTGCTCCTGGACATCGGCAAGGAGGTTT
GCCACGTATCCCCCGCCGAGGACGCGGGCCCAGTGGAGGAGACGACCATC
CGAGAACTGTTGCAGGCGCGCGTGGAGGGAACGCTGCCCATGGAGACCTT
TCGACAACCCGAGCCGGAGGAGGCGGCGGCCTCTGCCTCTGCGAAAGGGG
CGGGGACGGTCTGAGAGTGTTCCGAGAGGTCTAACTTTTGAAAGATGAGA
GAGATGAAGGCGATAGGCTGTAACAAGCTTGTTCGTGTCACGATAGCAAA
GACCAAAATGAAGAGCGTAAGAGAAAAATACACAGGCAAGAGGCGGACAA
GACACAGCCGAGAGGAAAGTCCAATGGATGAAGAAGCCGAGCCCGAATGT
GGGCCTCAGATTCGGGCTATCGATTTGTTGTTTTCGCTATTCCCGCCATA
CCACCATGCTTTCCGTGGGCCCCAAGCCCGTCTTTCCCCCTTCTTGCCGT
TATCCGGCTCCCGCCCTCCT
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Coding sequence (CDS) from alignment at CM002461.1:488831..491100-

>rna3469 ID=rna3469|Name=rna3469|organism=Nannochloropsis gaditana|type=CDS|length=1893bp|location=Sequence derived from alignment at CM002461.1:488831..491100- (Nannochloropsis gaditana)
ATGAGGACTCTCAGCTTGTACCTACTTCTTGGAATCATTTTACACGCTGT
TGAGGCGTCGCGATTTTCTCTTAGCCCTCCGGCATTCTTCAATCGGTTTT
CAGATTTTGAGGAGGAGTATGAGGAGGAGGAGGAGGGTCCTGGGCTGGGG
GGTTTGCCCTTGAAAGCCTTGGTGGGCGCAAGTGTCGCAGCAGTTGGAGG
TGTTGGTGTATCGTTTGCTCGACGAGCAATCAAGGCCAAGCAGCAGCGCG
TGTCGACACCGAAGCAACAACGCTCTCATCTTCCAAGCAGCAGCACCGTT
GGAAGCAGCACTCCGTCATTTGTCGAAAGCGGCATCAAGGGTGGCAAGAG
CGATCCCAAAATAGCACGCGGTACAACAACAATGGCACCACCATCGTCTA
CAGAGGCTGATGGCAGCGGCGAGGAAGCTGAGAAAGAGCCTGAGGAGGTT
TTCGATGTAGAGCCCGTGGTCGAGCTTGACGAGTCCAAGCTGTCGGAGGG
CCAGAAGGAGCATCCCTACGCAAAGCTGCTGGGACCGAAGCTTGTCAAAT
ATGATTCCAAGCAAGGGAAACTTGTGGAAGTGGCAACGGCGGACGTGTTG
GACGGGAAGGTGACGTCTCTTTTTTTCCACGCTCAGCAGGTGGAGCAGAT
GCTGGAGAAGATGAAGGCGGGAAAGGTCCTTCCTGGACTCAAGGAGGTCT
ACGCCGAGCAGCGGGCGAAAGGCAACAACTTTGAGGTGGTGTTCATGTCG
CTGCCTGATGGCCAGGAGGGGCGCTTTCAAGCGTACATGAAGGACATGCC
CTGGTATGCCATGCCCTTTAACGCTACCGAGCGCCTGCGCGACGCGTACA
AGGCCTTCAAGATCCAGAACCTCCCTGCCGCAGTGGTGGTGGACGAGCAG
GCTCAGGTTTTGAATGAGAAGGGGTTTACGTACATGCTTATCGACAAAGA
GGGGTTCCCGTGGCACCCGAAAACTCTCTCCCAGATGCTCGGCTCTACCT
TCCTTAGCAAGGACCGGAGCGTGCCAGCCGCCGAGGTTGCGAAGAAAAAA
GTTCTTGCCCTTTACTTCTCGGCTAACTGGTGTAAGCCATGCCAAGAGTT
CACGCCCAAGCTGGTGGAGGCCTACGAGAAAGTTAGGGCGCAGGGGAAGG
ACTTGGAGGTGGTGTTCGTCTCCATGGACGAGACGGAGGAGAAATTTAAG
GAGTACTTCGCGAAGATGCCATGGCTGAGCCTGCCCTACGAGGATAAGAC
GGCTCGCTCGCTCCTCATGACGGAGCTGGAGGTGAAGGGGCTGCCGACGC
TAGTGTTGCTGGACGAGGAGCGGGAGGTAATCACAAGCAAGGGCCGAGAC
TTCGTCCTCAAAGACCCGGAGGGCGCCAAGTTTCCCTGGTACCCGCAGCC
CTTGAACGAGATTTCCTATTCTTTCGACGGTATCGCGCAGAAGCCCTCCT
TGGTTCTCTTCATGGAGGGCGCATCGGCCGATGCCCAGGCGAAGATGGTG
GCGGCCATGCAAGCTGTGGCCGAGGAATTCACTGCCAAGAACAAGCTGGC
GCCTGAGGACGCGGCGCACCGGTTCAATTTCTATTATGCCCAGGAGATCT
CAACATTCTCTAAGGCCCTCCGCTCCATCGCCGGGTTGGAGCAGCTGAAT
CCGAAGGACAAATTTCTGAAGTCCAAGGCGGAGGCCAACAAGCCGCGGCT
GGTGCTCCTGGACATCGGCAAGGAGGTTTGCCACGTATCCCCCGCCGAGG
ACGCGGGCCCAGTGGAGGAGACGACCATCCGAGAACTGTTGCAGGCGCGC
GTGGAGGGAACGCTGCCCATGGAGACCTTTCGACAACCCGAGCCGGAGGA
GGCGGCGGCCTCTGCCTCTGCGAAAGGGGCGGGGACGGTCTGA
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Synonyms
Publications