rna346, rna346 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna346
Unique Name	rna346
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1994
Alignment location	CM002455.1:850872..853865 +

Link to JBrowse

Properties


Property Name	Value
Product	alpha-galactosidase
Orig transcript id	gnl\|cribi\|Naga_100003g150.1865.mrna
Orig protein id	gnl\|cribi\|Naga_100003g150.1865
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:850872..853865 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g150	gene333	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna346	rna346-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30348.1	cds346	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:850872..853865+
coding sequence from alignment at CM002455.1:850872..853865+

mRNA sequence

>rna346 ID=rna346|Name=rna346|organism=Nannochloropsis gaditana|type=mRNA|length=1994bp
ATGTTTACAGCTGGATTTTCCAAGATTCGGTTGGGCCACGTGCTTACGGT
TTCTTTCTCACACACATGTTCAGACAGTGTCACCAAACAGGCGGCGGACA
AGGCAAAACTTTTGCAACTCCATCTTGCCTTACCTTCTACCACCAGGGAG
GTAAATTGCCAGGCACTTTACATGGCAGAAGGAAACCTGGACATGCCTGA
GGACTGGCTGCGGGCAGGGAGTCTTGGTGCGCAGTTGGCCCGATTTGAGT
CGCATTTACGGTGTCCGATATGCGCAAAGTTCTTGGAGACAGCCATGGCA
GCGGAGTGCGGGCACACATTTTGCTCTATTTGCGTTCGGGACTGGCTAGG
CCGTGGGGAAGACCACCAGAACTGCCCGCAGTGCAAGGCAAACCGCAAAC
CAAATATCGTCCTGTACAAAGATCGACTGAAGCCATGTATGAGCTTGGAC
AGCGCAGCTCGAGGTTTTAAAGAGCTGCGAGGCGCGCTTTTGAGGGCAGT
CTTCGAGGCTGGTGGCTGCGACGCCAAAATCGAGGAAGAGGCGAGACAAC
GCACAGGTAGAAACGCTGATAGTGATCAAAATGGTCGCCGGGCGCTTGAT
GACTCTCACCAGCGAGGATTGGATCATTTTTGGGCTTCCAAGCAGTGGAG
CGGGGCACTCAAGCGACACCCCGGATACCATAATGTGAAGGAAAAAGGAC
TCAGGCAAGAATTATGGGCCATGGGTATGATGACTTCGGGCAAAAAGGAC
GATTTGGTCTTGAGACACCAGACTTTCATCAAGCTGGCCGAAGCGGAGGC
GGACAAGGTAGTGCTTGGGAGGCCGACACGAACCCGAGAGCAAGTAGTCA
AAGAGGTCGAGGAAAAAGTGCGCGCTCGCTCCAACGTGGGCACTGGCAGT
ATGGCCCGAGCACCTGTGAACGTGGAGACGTTATCGCAGCATGAAGGCTA
TAAGATCATGATTAAGGAAATGAGACGGCGACAGAAGGAACAGAAGCGGC
GTCAGGACGGTATAAAACTTACGAGCGATGACGATGCATTAGAAGATAGC
ATCAACTCAAACACATGTAAAAGAAAGGATATAGAACTTGAGAGGCTCGA
GACAAAGGAATGGAAACCAGAAAGGGGCGTTCAGAAAGCAAAGTACGCAG
CTGCAATCGCGATTTGCGGAGCAAACAGGGGAAATGAGCAGGATCTGGGA
GGAAGTCAAAACGGTGATGTCCGACAAACGAAATCCGATGCTCTACGAAC
GGATTTGAGCTCTCCGTCCGGTCATCAGCTCGTAGGAAAAGATGATGATG
AGGATGTCATGCATCTGCAAACGGTGAAGAGCGAAACTTCGAGGAGCATC
GACATGAAGCGGCGTCAATATTCTAAAGATGATGAAGTCAATTACAAGCA
ACGGAGGAAATCGGTGAATACTTTGACGGCATGCGCATCGAGATGGATAT
GCCAAGCATGTACGTTGAATAATGCAGGACATGCTTTAAATTGTGCTGCA
TGCAACGTGCCTCGACGTGCGTTCATCACAAGCACGACAAGCATGAAGAC
TGTCAAGGCCGTCCAGGAGAATTTACTTCATGAGGCCCTCCAGCACAAGT
CCCGGCAAGTTTCGGATGCCATGGTCATTTTTGACGAAGGAGTGCGCCAA
TCTGCAGGCAAAGCGATGGCAGGTGTGGACAATCTGGGGGTACGTTTACG
TCGCGTAAAACCAGCTTCGGGTGGGTTGGCTGGTTTTTCGTATCAGATAT
CGGATGAAGTAAGTCAAGCCCAACACGAAGATGAAGAAATTACTGAATGG
GAGGGTGATTCTGTAAAGAGTGAAGAATACGATAAGGGCTGGAACGAGAA
CAGCATGCGTGTGCGGGCGTCGCCCAAAGCTGAAAGTCCCTCATACTGAA
AGCCCGTTGTCTACAAACACGACCCGACCCGCATCTTTAGCTGAACACAT
AAAGTAGAAGATGCAATTGTAATTAAAATTATTTCTTGCTTCCC

protein sequence of rna346

>rna346-protein ID=rna346-protein|Name=rna346|organism=Nannochloropsis gaditana|type=polypeptide|length=997bp
MEGVKERKEEKYILRNEHAALTVWPAGIPLDHPDHCHHQHHHLNQYEPAP
GPRFSFISNENTSLGIFDTSTIEFRGKLRGKAWKTTMAEAVDVQVIKSNL
GCARFPGLDDFGPEALTLEARLPEIGQVCVDFALHTIGPSMVLRLRCPAL
ACSHDVRLDEFVLFDGDCDVSQGPRRDGKSLARIWWEYLSRRVRGLGPRR
VFVNGWNAWSFTGVVQQGARPSAPGLPGILSAAFHHGAGPAEFDRSNNKE
LYSEMFAHVSDKSRGTGLLLGFLTQHEQFGAFSFDECFVEVGAHCRCDGQ
LLKAGELMQSDWCLVELQTTLPEEPFATFIARAGRVNTALLEEKYKIIAC
RPDTKNVPVGWCSWYHFYEAISEDNLLSNLEMMANLRPQLPLQLFQIDDG
YQRAWGDWLKIDPLKFPNKSMRDMVDAVRSRGLRPGLWLAPMAVDKHSQI
AADHPDWIIRQQGGLSHGWAANSANVGKWFYGLDVTLPEVQAFIRETLTT
VSHGAWSFDYLKLDFLYVAALKGARSDPTLNTAQVLQLALRLIREAVGPS
TYILGCGSPLGATIGWVNANRVSADAGPAWLPVFPLPDCKWNLPCGRNMV
RNTINRLPMHGVWWVNDPDCMLLRESTQFTPAEVIGIATVKALSGGSFLV
SDDLQSVSHRRMRIAQVMLPVIGRAAIALDLLEREMPEILRLYVDQDSFS
EETSMCHAANTFFSHHVPQDPWVVVGFCNWDDAKKHSMHPYKSILRPLLV
DVGPVIILHIFEFWTSKYFQVRLNLDLNPDALMSTADFFDGMDGGEIQPH
SARLYAMRVDPRQIPSALTSTSQGAESARGSTMRRAPLYLGSDVHFSCGW
ELRKCIWGEESDYLDKAKVTRVSVHVVIDAGKVVDGTSHHIWLDLPGSED
SIKLDGAPEGSERVNFSVKGIYEGLEESTAPSLPTLFSGKHRSEGALATA
APRSPSIRRTVWKIRFPEGHSQRISWTLNYISTFDQDDQIRKDVQKK

mRNA from alignment at CM002455.1:850872..853865+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna346 ID=rna346|Name=rna346|organism=Nannochloropsis gaditana|type=mRNA|length=2994bp|location=Sequence derived from alignment at CM002455.1:850872..853865+ (Nannochloropsis gaditana)
atggagggggtaAAGGAacgaaaagaggaaaagtaCATTTTGCGGAACGA
GCATGCGGCTCTCACTGTATGGCCCGCTGGTATCCCTCTTGATCACCCCG
ATCACTGTCATCATCAACATCATCATTTGAATCAATATGAACCTGCGCCC
GGGCCACGCTTCTCATTCATAAGCAATGAGAACACGAGTTTGGGGATTTT
TGACACCAGCACCATTGAGTTTCGTGGAAAACTTCGTGGAAAGGCATGGA
AAACAACGATGGCAGAAGCGGTTGATGTCCAGGTGATCAAGTCGAACTTA
GGCTGTGCGCGCTTTCCTGGATTAGACGACTTCGGACCGGAAGCGCTGAC
GCTGGAGGCGCGACTGCCAGAAATTGGCCAGGTTTGCGTGGATTTTGCCT
TGCACACAATAGGACCCAGCATGGTTTTGCGTCTGCGCTGCCCAGCCCTT
GCCTGCTCCCATGACGTGCGGCTCGACGAGTTTGTGCTCTTCGACGGTGA
CTGCGACGTCTCGCAAGGGCCCCGACGGGATGGGAAATCTCTGGCTCGGA
TCTGGTGGGAATATTTGTCAAGACGGGTCCGGGGGCTCGGTCCTCGGCGT
GTTTTCGTGAACGGGTGGAACGCATGGAGTTTCACAGGCGTGGTCCAGCA
AGGGGCTCGTCCTTCGGCACCCGGATTGCCAGGGATCCTGAGTGCAGCTT
TTCATCACGGTGCAGGACCTGCAGAATTTGATAGAAGCAATAATAAGGAG
CTTTACAGCGAGATGTTCGCGCACGTCTCGGACAAAAGCCGAGGAACAGG
CCTCTTGCTGGGCTTCCTGACTCAACACGAGCAGTTTGGGGCTTTCTCGT
TTGATGAGTGCTTCGTCGAGGTGGGAGCTCACTGCCGCTGTGATGGACAG
CTACTCAAAGCAGGGGAGCTTATGCAGTCGGACTGGTGCCTCGTCGAGCT
TCAGACGACCTTGCCTGAAGAGCCTTTCGCAACGTTCATTGCGCGAGCTG
GCCGGGTCAACACAGCCTTGCTGGAAGAAAAATACAAAATTATTGCATGT
AGGCCCGATACAAAAAATGTTCCAGTGGGTTGGTGCTCATGGTATCACTT
CTATGAGGCTATATCTGAGGATAATTTGTTATCAAACCTGGAGATGATGG
CCAATCTTCGGCCGCAGTTGCCACTGCAACTTTTTCAAATTGATGACGGC
TATCAACGAGCGTGGGGTGACTGGCTGAAAATAGACCCGTTGAAATTTCC
CAACAAGAGCATGCGGGACATGGTAGATGCTGTGCGGTCGCGGGGCCTTC
GACCTGGTCTCTGGCTTGCCCCCATGGCAGTCGACAAGCACTCTCAAATA
GCAGCAGACCATCCCGACTGGATCATCCGCCAGCAAGGAGGACTCAGCCA
CGGATGGGCGGCCAACTCGGCGAACGTTGGGAAGTGGTTTTACGGATTAG
ACGTTACCCTACCGGAGGTACAGGCTTTTATTCGCGAGACGCTCACAACG
GTCTCGCACGGCGCTTGGAGTTTCGATTACCTGAAGTTGGACTTTCTTTA
TGTGGCAGCTTTGAAGGGCGCGCGCAGCGATCCGACTCTCAACACAGCGC
AGGTCCTCCAACTTGCTTTACGCCTGATtcgggaggccgtgggcccTTCC
ACGTATATCCTCGGTTGCGGCTCGCCACTTGGAGCTACCATCGGCTGGGT
GAACGCCAACCGAGTGTCGGCGGATGCAGGCCCAGCATGGCTCCCCGTTT
TCCCTTTACCCGACTGCAAGTGGAACCTGCCTTGTGGGCGGAATATGGTT
CGAAACACCATTAACCGTCTTCCAATGCACGGTGTCTGGTGGGTGAATGA
CCCGGATTGTATGCTGCTGCGTGAGAGTACTCAGTTCACGCCTGCAGAAG
TGATTGGTATTGCCACTGTGAAGGCCTTGTCGGGGGGCTCGTTTTTGGTC
AGTGATGACCTGCAGTCGGTCAGCCATCGACGAATGCGAATCGCTCAAGT
TATGCTGCCCGTGATAGGTCGCGCGGCTATCGCACTGGATTTGTTGGAGC
GTGAAATGCCTGAAATTCTCCGCTTGTACGTAGATCAGGACTCTTTCAGT
GAAGAGACAAGCATGTGTCATGCAGCAAACACCTTTTTCAGTCACCATGT
GCCGCAAGATCCTTGGGTTGTGGTAGGATTCTGCAACTGGGACGATGCCA
AGAAACATTCGATGCATCCATACAAGTCTATATTGCGGCCGCTACTAGTT
GATGTGGGTCCTGTCATTATCCTGCACATTTTCGAGTTTTGGACGTCAAA
ATACTTTCAGGTCCGACTGAACCTGGATTTGAACCCCGATGCTCTCATGA
GCACCGCTGATTTTTTTGATGGGATGGACGGAGGAGAAATACAACCTCAC
TCGGCACGTCTCTATGCTATGCGGGTTGATCCACGTCAGATCCCTTCGGC
ACTGACGTCCACATCCCAGGGAGCCGAAAGTGCTCGGGGGTCAACGATGC
GTCGAGCTCCCTTGTATCTTGGGTCAGATGTGCACTTTTCATGCGGGTGG
GAGCTCAGAAAATGTATATGGGGAGAAGAATCGGATTATCTTGATAAAGC
GAAGGTCACAAGAGTATCGGTGCATGTGGTTATTGATGCGGGAAAAGTCG
TGGATGGAACTTCCCATCATATTTGGTTAGATTTGCCCGGGTCAGAAGAT
AGTATAAAATTGGATGGCGCACCAGAGGGGTCAGAAAGGGTGAACTTTTC
TGTAAAAGGGATTTATGAAGGCTTGGAAGAGAGCACTGCACCGTCACTCC
CCACCTTGTTTTCGGGAAAACACCGGTCGGAAGGCGCGCTGGCAACGGCG
GCTCCCCGATCTCCCTCAATACGGCGCACCGTTTGGAAGATTCGTTTTCC
AGAAGGTCACTCGCAAAGGATTTCTTGGACGCTGAATTACATAAGTACCT
TTGACCAAGATGACCAAATTCGAAAGGATGTACAAAAAAAGTAG

Coding sequence (CDS) from alignment at CM002455.1:850872..853865+

>rna346 ID=rna346|Name=rna346|organism=Nannochloropsis gaditana|type=CDS|length=2994bp|location=Sequence derived from alignment at CM002455.1:850872..853865+ (Nannochloropsis gaditana)
atggagggggtaAAGGAacgaaaagaggaaaagtaCATTTTGCGGAACGA
GCATGCGGCTCTCACTGTATGGCCCGCTGGTATCCCTCTTGATCACCCCG
ATCACTGTCATCATCAACATCATCATTTGAATCAATATGAACCTGCGCCC
GGGCCACGCTTCTCATTCATAAGCAATGAGAACACGAGTTTGGGGATTTT
TGACACCAGCACCATTGAGTTTCGTGGAAAACTTCGTGGAAAGGCATGGA
AAACAACGATGGCAGAAGCGGTTGATGTCCAGGTGATCAAGTCGAACTTA
GGCTGTGCGCGCTTTCCTGGATTAGACGACTTCGGACCGGAAGCGCTGAC
GCTGGAGGCGCGACTGCCAGAAATTGGCCAGGTTTGCGTGGATTTTGCCT
TGCACACAATAGGACCCAGCATGGTTTTGCGTCTGCGCTGCCCAGCCCTT
GCCTGCTCCCATGACGTGCGGCTCGACGAGTTTGTGCTCTTCGACGGTGA
CTGCGACGTCTCGCAAGGGCCCCGACGGGATGGGAAATCTCTGGCTCGGA
TCTGGTGGGAATATTTGTCAAGACGGGTCCGGGGGCTCGGTCCTCGGCGT
GTTTTCGTGAACGGGTGGAACGCATGGAGTTTCACAGGCGTGGTCCAGCA
AGGGGCTCGTCCTTCGGCACCCGGATTGCCAGGGATCCTGAGTGCAGCTT
TTCATCACGGTGCAGGACCTGCAGAATTTGATAGAAGCAATAATAAGGAG
CTTTACAGCGAGATGTTCGCGCACGTCTCGGACAAAAGCCGAGGAACAGG
CCTCTTGCTGGGCTTCCTGACTCAACACGAGCAGTTTGGGGCTTTCTCGT
TTGATGAGTGCTTCGTCGAGGTGGGAGCTCACTGCCGCTGTGATGGACAG
CTACTCAAAGCAGGGGAGCTTATGCAGTCGGACTGGTGCCTCGTCGAGCT
TCAGACGACCTTGCCTGAAGAGCCTTTCGCAACGTTCATTGCGCGAGCTG
GCCGGGTCAACACAGCCTTGCTGGAAGAAAAATACAAAATTATTGCATGT
AGGCCCGATACAAAAAATGTTCCAGTGGGTTGGTGCTCATGGTATCACTT
CTATGAGGCTATATCTGAGGATAATTTGTTATCAAACCTGGAGATGATGG
CCAATCTTCGGCCGCAGTTGCCACTGCAACTTTTTCAAATTGATGACGGC
TATCAACGAGCGTGGGGTGACTGGCTGAAAATAGACCCGTTGAAATTTCC
CAACAAGAGCATGCGGGACATGGTAGATGCTGTGCGGTCGCGGGGCCTTC
GACCTGGTCTCTGGCTTGCCCCCATGGCAGTCGACAAGCACTCTCAAATA
GCAGCAGACCATCCCGACTGGATCATCCGCCAGCAAGGAGGACTCAGCCA
CGGATGGGCGGCCAACTCGGCGAACGTTGGGAAGTGGTTTTACGGATTAG
ACGTTACCCTACCGGAGGTACAGGCTTTTATTCGCGAGACGCTCACAACG
GTCTCGCACGGCGCTTGGAGTTTCGATTACCTGAAGTTGGACTTTCTTTA
TGTGGCAGCTTTGAAGGGCGCGCGCAGCGATCCGACTCTCAACACAGCGC
AGGTCCTCCAACTTGCTTTACGCCTGATtcgggaggccgtgggcccTTCC
ACGTATATCCTCGGTTGCGGCTCGCCACTTGGAGCTACCATCGGCTGGGT
GAACGCCAACCGAGTGTCGGCGGATGCAGGCCCAGCATGGCTCCCCGTTT
TCCCTTTACCCGACTGCAAGTGGAACCTGCCTTGTGGGCGGAATATGGTT
CGAAACACCATTAACCGTCTTCCAATGCACGGTGTCTGGTGGGTGAATGA
CCCGGATTGTATGCTGCTGCGTGAGAGTACTCAGTTCACGCCTGCAGAAG
TGATTGGTATTGCCACTGTGAAGGCCTTGTCGGGGGGCTCGTTTTTGGTC
AGTGATGACCTGCAGTCGGTCAGCCATCGACGAATGCGAATCGCTCAAGT
TATGCTGCCCGTGATAGGTCGCGCGGCTATCGCACTGGATTTGTTGGAGC
GTGAAATGCCTGAAATTCTCCGCTTGTACGTAGATCAGGACTCTTTCAGT
GAAGAGACAAGCATGTGTCATGCAGCAAACACCTTTTTCAGTCACCATGT
GCCGCAAGATCCTTGGGTTGTGGTAGGATTCTGCAACTGGGACGATGCCA
AGAAACATTCGATGCATCCATACAAGTCTATATTGCGGCCGCTACTAGTT
GATGTGGGTCCTGTCATTATCCTGCACATTTTCGAGTTTTGGACGTCAAA
ATACTTTCAGGTCCGACTGAACCTGGATTTGAACCCCGATGCTCTCATGA
GCACCGCTGATTTTTTTGATGGGATGGACGGAGGAGAAATACAACCTCAC
TCGGCACGTCTCTATGCTATGCGGGTTGATCCACGTCAGATCCCTTCGGC
ACTGACGTCCACATCCCAGGGAGCCGAAAGTGCTCGGGGGTCAACGATGC
GTCGAGCTCCCTTGTATCTTGGGTCAGATGTGCACTTTTCATGCGGGTGG
GAGCTCAGAAAATGTATATGGGGAGAAGAATCGGATTATCTTGATAAAGC
GAAGGTCACAAGAGTATCGGTGCATGTGGTTATTGATGCGGGAAAAGTCG
TGGATGGAACTTCCCATCATATTTGGTTAGATTTGCCCGGGTCAGAAGAT
AGTATAAAATTGGATGGCGCACCAGAGGGGTCAGAAAGGGTGAACTTTTC
TGTAAAAGGGATTTATGAAGGCTTGGAAGAGAGCACTGCACCGTCACTCC
CCACCTTGTTTTCGGGAAAACACCGGTCGGAAGGCGCGCTGGCAACGGCG
GCTCCCCGATCTCCCTCAATACGGCGCACCGTTTGGAAGATTCGTTTTCC
AGAAGGTCACTCGCAAAGGATTTCTTGGACGCTGAATTACATAAGTACCT
TTGACCAAGATGACCAAATTCGAAAGGATGTACAAAAAAAGTAG

Synonyms

Publications