rna3454, rna3454 (mRNA) Nannochloropsis gaditana

Overview
Namerna3454
Unique Namerna3454
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1748
Alignment locationCM002461.1:453188..453539 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100010g7.6172.mrna
Orig protein idgnl|cribi|Naga_100010g7.6172
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:453188..453539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g7gene3328Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3454rna3454-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27202.1cds3445Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3454 ID=rna3454|Name=rna3454|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp
GGATACTCTTGTTTAATGCTGCCCATTCCACTCAACAGGTCGCATTGAAT
CAACCACACACGGTGCACGTGAATTTCATGGCCAGCTGTGCGATATCGGC
CTCTGCGTCTCTATGCCGGCGTGTGTGTAAGAGACATTTTTTCAGATCGC
GCTTTCCACCACAACGATCGTTTTGTGCTGCAGAAGGGCAAGCTGGAGGG
ACGGGCGCATCAAATGCGAACGCCACTGGCATTGCGATTACTTCGAGGGA
AGCAAGGCGTCAAAAGTGGTTGAAAGAGAAAGCGGCGGCTCAAGAGGCGT
CCGCTGTAGGATCAAAGGCAGGCAGCTCGGAGGGTGATTCCGCGGCGATG
GCTGCTGGCCCTGCCTCCTCGGGCGCCGCTCCCAGCCATGCAGCCTCCGC
CGCGATCAAACTCCTGGCTACCGGTGGAGCGGCAGGTGTTGCATACGTGG
TTTACGAAACTTCGGCTGGCGACAAAAGTACCGACGACGTCCTCCGCGCC
TCCCCCCTGGGTCGCCCTTACGCGTGGCTTTACGACGCAGTCTTCTCACC
CTTCGTCAATCCCTCCCGCGAAAAGCTCCTGCCCGACTGGCACAGTATTC
CCAACATCCCACCGGACGCGCCCTGCCCCCCGACGCTCGTACTCGACCTA
GAGGATACCCTGGTTCACGCGACCTGGGACCCGAAGTACGGCTGGAGGTA
TGCCAAACGTCCTGGCGTGGACCGCCTCCTGCAGGACCTGAGCAAGTACT
ACGAGATCGTGCTCTTCTCGCCCAGCAACTTCGGGGTGGTCGACCCCATC
ACCTGGACCCTGGATAAACAGGGCCTGATCATGCACCGGCTCTACAAGGA
CTCGACGCGCTTTCACCAGGGCAAGCACGTCAAGGACCTGAGTAAGTTGA
ACCGGGACCTGCGCAAGGTGGTGATTGTGGACGACGACCCCGAGGCCTTC
CAGTTCCAGCCCGAGAATGGGATCCGCATTAAGCCTTTCCGCAATGCCAA
GGACAAGGCGGATCGCTCGCTCGAGAAGCTCCGGGGCTTCCTGCTAGCCC
TGGTCATGGAGGGCGTCGCCGACGACATCCCCGCCGTTCTCCGCCAGTTC
CAAGGCCTGGACGCGGAGCAGATCGGGGACGCCTACGCCAGTATGCTGCG
ACGGGCCCAAGTCCGGGAGATAGAGAAGCAGCAGAGGGGTCTGGGCGGAC
TCTTGCGGTCGGGGAGGGCCTTTCAGAGCATGGGCCACGGCTTGCCCGGG
AACGCTGCCCGCTCGCCCGCGGCGCCCACCCGCCTCTCGGCCAAGGACAT
TGTGGGGGAGCCGATGGGGGAAAGCGCACAGCCAAACTCCACCGTGGCGG
CGGCAGCGGCGGTGCCCGACCAGCCCCACCAGACTCCCCCCCCCCGCCCG
GGCCGGTCAAGAAGGGCAAGCTCTGGCAGCGGTACCAGGATTACTTGAAG
GAGGCGGAAGAGGACCAGAGGCGCAAGCTGGAGTTGTGGAGCAAGAAGCA
GCAGCAGCGGGAGGAAGAAGCACGCCGACAGGCCATCGCGGCGGGAGTGG
GGGGGCAATGAAGGGCCAATGTCGTAGCCGACGCGCTAGACATTTAAAAA
TAAATCATTATGAAACATCTTTTCACAATCTCTACATGTTTTTGCTTTCA
AAAACGATGTAGTTGTTTGCCTTGTTTTTTTGGCAGCCGTCCACGGCGAG
GGATTGGACAAGCTTCCACGCGCGAATCAAATAGAACATCCATAAAGC
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protein sequence of rna3454

>rna3454-protein ID=rna3454-protein|Name=rna3454|organism=Nannochloropsis gaditana|type=polypeptide|length=81bp
MTGPTYVKTGLHGNFRTRNRVSPSDPSLPCLRRYTHSSGRVSLIGGHRLF
CPLSSEGTGWRISKGAIAFRARSAGLARSSG
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mRNA from alignment at CM002461.1:453188..453539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3454 ID=rna3454|Name=rna3454|organism=Nannochloropsis gaditana|type=mRNA|length=352bp|location=Sequence derived from alignment at CM002461.1:453188..453539- (Nannochloropsis gaditana)
ATGACGGGGCCAACATATGTCAAAACAGGGCTTCATGGAAATTTCAGAAC
AAGAAACAGGTGCGTGCGATGCAATATAGTGGCTCTTGTCCGTTCTCTTC
GTGTCTCCGTGCGTTTTATCGCGAGATATTCACAGCTCTTGTGTTCCCGT
CTTTTTTTCCGGCAGGGTTTCACCAAGTGATCCATCGCTGCCATGCCTGA
GAAGGTACACGCACAGCTCTGGGCGCGTCTCGTTGATCGGGGGCCATCGC
CTTTTTTGTCCTTTATCGTCGGAGGGAACGGGTTGGAGGATCTCGAAGGG
AGCCATAGCTTTTAGAGCGCGATCGGCTGGACTGGCCCGCTCGTCGGGAT
GA
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Coding sequence (CDS) from alignment at CM002461.1:453188..453539-

>rna3454 ID=rna3454|Name=rna3454|organism=Nannochloropsis gaditana|type=CDS|length=492bp|location=Sequence derived from alignment at CM002461.1:453188..453539- (Nannochloropsis gaditana)
GGTTTCACCAAGTGATCCATCGCTGCCATGCCTGAGAAGGTACACGCACA
GCTCTGGGCGCGTCTCGTTGATCGGGGGCCATCGCCTTTTTTGTCCTTTA
TCGTCGGAGGGAACGGGTTGGAGGATCTCGAAGGGAGCCATAGCTTTTAG
AGCGCGATCGGCTGGACTGGCCCGCTCGTCGGGATGAATGACGGGGCCAA
CATATGTCAAAACAGGGCTTCATGGAAATTTCAGAACAAGAAACAGGGTT
TCACCAAGTGATCCATCGCTGCCATGCCTGAGAAGGTACACGCACAGCTC
TGGGCGCGTCTCGTTGATCGGGGGCCATCGCCTTTTTTGTCCTTTATCGT
CGGAGGGAACGGGTTGGAGGATCTCGAAGGGAGCCATAGCTTTTAGAGCG
CGATCGGCTGGACTGGCCCGCTCGTCGGGATGAATGACGGGGCCAACATA
TGTCAAAACAGGGCTTCATGGAAATTTCAGAACAAGAAACAG
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Synonyms
Publications