rna3452, rna3452 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3452
Unique Name	rna3452
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2189
Alignment location	CM002461.1:449413..451108 -

Link to JBrowse

Properties


Property Name	Value
Product	N2227-like domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100010g5.6156.mrna
Orig protein id	gnl\|cribi\|Naga_100010g5.6156
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:449413..451108 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g5	gene3326	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27186.1	cds3443	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3452	rna3452-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:449413..451108-
coding sequence from alignment at CM002461.1:449413..451108-

mRNA sequence

>rna3452 ID=rna3452|Name=rna3452|organism=Nannochloropsis gaditana|type=mRNA|length=2189bp
CCGCCGTAGCTCGGGCTCGCTCTTGCGTCCTTTGTGGTGCTCGAGCCCGT
GGATGATGCCGGCGGTCGTGGGCAGACCTTGGGCCCGCAAGGCTGAGAGC
GCCAGGTCACCCTCCTGCGCCACGGCCCCTTCCGCGCCCCTGCTCACATC
CAGGATGAAGAGTACCATGTCTGCCACTCGCGCTGCCTCCAAGGCCTCGT
GCAGCCCGAAGTGGGGGAGCAAAAAGGTAAACCGTTGCTTCAAATTCTTG
AAAGCCGCTGTCAGAACCCCTGGGCTCGACACGGTAACGTCTTCTCCTGC
TGTTTGCTGAGGCTCGCGAGTCTTAAACAGAGCCTCTTGTACGGCATGTA
AGTCACAGTACGGAGAAAGAGGCAGGAGGGCCACAAGCGAGGGAGGACCG
AGGGCGGAGCCTGTGCGCCGCTGCAAAAACTGCTCTTGCCGCTTTTGTTC
CTTCACCTGCCGGGCACGATTCAGGCGATCTCGCTTGAAATCGTTCTCAA
AGGTACGTTGTTTGTTTCCTTGGCGCTGTTGTGATGTCGCAGACGAGGCG
ACGGAGACATGGCTGCTGACAGCAGTGACCTTGCCGCCCTCATCGCGCTT
AACCGCACGCTTTGACGCAAGGTGTCGACGCGCTTTGTGCTTCTTGTTTT
GCTGCTTGAGCTTTCCAGCCCGGTGATGAAACATCTGACGCCATGATATG
CATTCCATATACAAGAACGGTGAGGGATCCAGCATTGTCGTTGAAAAATG
GGATATGTATGGGGACCAGTCAAGTTACTGGGGCCAACCTGGATGGATAC
GATTCCTAATAATTAAGGCCCGCAGTGTGTCCCCAAATCCGGGCAAGCAG
GGTGCACACGAGTCCTACAACAGGGTTTTATCATTGAATGGACGATTGAT
CTTTGATGGGGGTTCGATCATTGCTTAAGTCCCCGTGAAACATGTGAGAA
GGGTTTGATTAGGGGCCCTCGCCGACCTCCCGCCTCCTCCAGCCAAATAC
TCCCCAGGTACATGGGGCAGTTTGCAAAAGATAAGTTTCCACGAAAATTT
GTTTACCTTTCTTCAGGCGAAGTACAAAGCTACACTTGTGTTGATGGTTT
CCAGGGCTCGGGTCTCCAGTCGTCCTCCGCCAGGCTTCAAGGAGCGGCTA
ATCGGGGGCCTCCTATTGGCCTCTCTCGTTTATGTCTGGCTATTCGGTGT
CATCGTTATACCTCTGGCGATTTTTTTAGTGTTAGCAAGGGGTGATCATA
CCCTGGTCCTGGTACTGCTGGTATACTACGCCTATCGCTTTGTCTTCCCC
ACCAAGGAATGGGCTTTTGTTCGCGACATCTACCGTGCGGGCAACCGGTA
CTTCCACCCGCAAGAGGTGGTATTCGATGGCTTCGAGAGGATTGATCCGG
GTTCCAGGTCCTTGATCTGCATGCATCCTCACGGAATTCTGACCGTGGGG
TGGGCACTGACCAGCACCAGCGCGACCATGAGCCACGCGCACGTGAAGTG
GTTGGTGACCGAGGCCTTGCTACGGCTTCCCTTCATCAGCGATTTCCTCT
CCTGGAATGGCTGCGCGCACGCCAGCAAAGCCTACATGCAGGCTCGGATG
AGTAGAGGTGCCAACCTAGCCCTGCTTCCTGGGGGTTTCGAAGAGGCCTC
GCTTTACCAACGCAACGCTTACCGAATTTACATCCGGAAACGGACTGGAT
TTATCGCCTACGCGCTTCGCTACGGCTACCGCGTCTACCCTGCTTTCGTG
TTCGGGGAGGAGAAGTGCTACTACTCCCTACTGCCCGACTGGGCGTGGTT
GACCGCTGTCAGGCTGTGGGTTAACAAATATCGCATGCCGGCCGTGGCCT
TCGTGGGCAAGCTCTTCCTGGTGCCGGGCTGGGACCAGCCGTTAATCACC
GTGATAGGCAGTCCAGTGCAGCTCCCCAAGATAGAGAACCCCGGCCAAAA
GGACGTGGAGAGGTACCATCAGGTGTACGTCAAAGCCCTGCTGGAGCTGT
TCGATAAGCATAAGGGGGCATATGCGGAGGCGGGGGCATCTTTGGAGGTG
TGGTGAGAGGATGAGTGGGGGTGTTAGGATCTCAGTGCCTGCTCAGAAGG
GTCGACAAGAGAGACGAACACTCTGTAAGGCTTTCGTGGGTACTGAATAG
GGTTTGGCATCAAAGTAACTATTTCATGTCGCTTTTCTC

protein sequence of rna3452

>rna3452-protein ID=rna3452-protein|Name=rna3452|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MTGRDDYQSGSGGCGEILRSGFGKNGGNCEQNVAHRPVPPPTSTSLATPE
EMHKEQQHLLEVVTAFLEYSKFAGMELERRWVHLGRLPEHYAKLLPPHSL
APALREHRKAIVDNQAFLNAVVRGVHEIAPAEGILDQAQKQLARQATLAP
RQILTSPANMTKIYATLHSCMREWSEEGAGERAACFDVILDALVEFLPVD
DSNRGRQRVLVPGAGLGRLPLEVVGRGYACQGNEFSYFMLLTSNFLLNHG
ESAKSLRLFPFAEQSCNLVRLGDNVRPVLVPDVSPAEMLREREVEEGPTE
EERSANAKARDGRKREAPRGRGPEMKLEVGGEKGEDRDEEDGYGEQECHD
AAHLPRKCLTPDFSMTAGEFLEVYGEQRGCWDALVTCFFLDTAPVVFEYM
ETIHRLLRPGGIWINFGPLLYHWKGGGPMGVGEEEDERFRRSVELSWEEI
RHVMTGQEGEGGGAFRFDMKREDFCGPVTYAADPTSMMRTVYDCVFFVAA
KKGGEGDRGDAEWLAPQAPVQGNVKRALNI

mRNA from alignment at CM002461.1:449413..451108-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3452 ID=rna3452|Name=rna3452|organism=Nannochloropsis gaditana|type=mRNA|length=1696bp|location=Sequence derived from alignment at CM002461.1:449413..451108- (Nannochloropsis gaditana)
CAGGGACATTGTGATGACGGGGAGGGATGATTATCAAAGTGGAAGTGGAG
GCTGTGGTGAAATACTGCGCAGTGGCTTTGGGAAAAACGGAGGAAATTGC
GAGCAAAACGTAGCACATCGACCCGTCCCCCCACCGACCTCAACGTCGTT
AGCCACTCCGGAGGAGATGCACAAGGAGCAACAACATTTGTTAGAGGTGG
TTACTGCCTTCTTGGAGTATAGCAAATTTGCTGGAATGGAGTTGGAGCGG
CGATGGGTCCATTTAGGCCGTCTTCCGGAGCACTACGCTAAATTGCTTCC
TCCTCACTCGTTGGCACCCGCCCTGCGGGAGCACCGCAAGGCCATTGTTG
ACAACCAAGCCTTTTTAAATGCGGTGGTAAGAGGTGTCCATGAAATTGCA
CCTGCTGAGGGCATACTGGACCAAGCTCAAAAACAGCTAGCGCGACAAGC
AACGTTAGCTCCAAGACAAATTCTAACAAGCCCAGCGAATATGACCAAAA
TTTATGCCACCCTCCACAGTTGCATGCGAGAATGGTCCGAGGAGGGGGCC
GGTGAGCGTGCTGCATGTTTTGATGTTATTCTGGACGCTTTAGTTGAGTT
TTTGCCCGTGGATGACTCGAATCGAGGTCGGCAGAGAGTACTGGTGCCGG
GCGCGGGCCTTGGGCGCTTACCATTAGAAGTTGTCGGCCGCGGTTACGCC
TGCCAAGGAAATGAATTTTCCTATTTCATGCTTTTGACCTCGAACTTTCT
CTTGAACCACGGAGAAAGTGCGAAAAGTCTCCGCCTGTTCCCGTTCGCGG
AGCAGAGTTGCAACCTCGTCAGGCTCGGCGACAACGTGAGGCCGGTGCTG
GTTCCAGATGTGTCTCCCGCTGAGATGTTGCGAGAGCGTGAGGTGGAAGA
GGGGCCCACCGAAGAGGAAAGATCGGCCAATGCGAAGGCAAGAGACGGAA
GGAAACGAGAGGCACCACGCGGGAGGGGGCCTGAGATGAAGCTGGAAGTG
GGGGGGGAGAAGGGGGAGGACCGGGACGAGGAAGACGGGTATGGAGAGCA
GGAATGCCATGATGCGGCCCATCTTCCTCGGAAATGTCTTACACCAGACT
TCAGCATGACGGCGGGGGAGTTCCTGGAGGTCTACGGGGAGCAACGAGGC
TGCTGGGACGCCCTGGTCACCTGCTTCTTCCTGGATACGGCGCCCGTGGT
GTTCGAATACATGGAGACCATTCATCGGCTCCTTCGACCAGGGGGTATTT
GGATTAATTTTGGACCCCTCCTATACCATTGGAAGGGCGGAGGGCCCATG
GGCGTGGGGGAGGAGGAGGATGAGCGTTTCAGACGGTCGGTCGAGCTTTC
CTGGGAGGAGATCAGGCATGTCATGACGGGACAGGAGGGGGAAGGGGGGG
GTGCTTTCCGTTTCGATATGAAAAGGGAAGACTTTTGCGGGCCCGTTACC
TACGCGGCGGATCCCACGTCGATGATGCGAACAGTATACGACTGTGTCTT
CTTCGTTGCCGCGAAGAAGGGGGGGGAGGGCGATCGAGGAGACGCGGAGT
GGTTGGCGCCACAGGCGCCCGTGCAGGGTAATGTAAAAAGAGCATTAAAC
ATTTAGTCTCGATAACAAGTGGGAAGTGAATTTTGGGTAGAGAACTCTGC
GGACTGCGGAGTTCGCGTGCTCCAAAATATCAAGTAATGTGGTGTG

Coding sequence (CDS) from alignment at CM002461.1:449413..451108-

>rna3452 ID=rna3452|Name=rna3452|organism=Nannochloropsis gaditana|type=CDS|length=1593bp|location=Sequence derived from alignment at CM002461.1:449413..451108- (Nannochloropsis gaditana)
ATGACGGGGAGGGATGATTATCAAAGTGGAAGTGGAGGCTGTGGTGAAAT
ACTGCGCAGTGGCTTTGGGAAAAACGGAGGAAATTGCGAGCAAAACGTAG
CACATCGACCCGTCCCCCCACCGACCTCAACGTCGTTAGCCACTCCGGAG
GAGATGCACAAGGAGCAACAACATTTGTTAGAGGTGGTTACTGCCTTCTT
GGAGTATAGCAAATTTGCTGGAATGGAGTTGGAGCGGCGATGGGTCCATT
TAGGCCGTCTTCCGGAGCACTACGCTAAATTGCTTCCTCCTCACTCGTTG
GCACCCGCCCTGCGGGAGCACCGCAAGGCCATTGTTGACAACCAAGCCTT
TTTAAATGCGGTGGTAAGAGGTGTCCATGAAATTGCACCTGCTGAGGGCA
TACTGGACCAAGCTCAAAAACAGCTAGCGCGACAAGCAACGTTAGCTCCA
AGACAAATTCTAACAAGCCCAGCGAATATGACCAAAATTTATGCCACCCT
CCACAGTTGCATGCGAGAATGGTCCGAGGAGGGGGCCGGTGAGCGTGCTG
CATGTTTTGATGTTATTCTGGACGCTTTAGTTGAGTTTTTGCCCGTGGAT
GACTCGAATCGAGGTCGGCAGAGAGTACTGGTGCCGGGCGCGGGCCTTGG
GCGCTTACCATTAGAAGTTGTCGGCCGCGGTTACGCCTGCCAAGGAAATG
AATTTTCCTATTTCATGCTTTTGACCTCGAACTTTCTCTTGAACCACGGA
GAAAGTGCGAAAAGTCTCCGCCTGTTCCCGTTCGCGGAGCAGAGTTGCAA
CCTCGTCAGGCTCGGCGACAACGTGAGGCCGGTGCTGGTTCCAGATGTGT
CTCCCGCTGAGATGTTGCGAGAGCGTGAGGTGGAAGAGGGGCCCACCGAA
GAGGAAAGATCGGCCAATGCGAAGGCAAGAGACGGAAGGAAACGAGAGGC
ACCACGCGGGAGGGGGCCTGAGATGAAGCTGGAAGTGGGGGGGGAGAAGG
GGGAGGACCGGGACGAGGAAGACGGGTATGGAGAGCAGGAATGCCATGAT
GCGGCCCATCTTCCTCGGAAATGTCTTACACCAGACTTCAGCATGACGGC
GGGGGAGTTCCTGGAGGTCTACGGGGAGCAACGAGGCTGCTGGGACGCCC
TGGTCACCTGCTTCTTCCTGGATACGGCGCCCGTGGTGTTCGAATACATG
GAGACCATTCATCGGCTCCTTCGACCAGGGGGTATTTGGATTAATTTTGG
ACCCCTCCTATACCATTGGAAGGGCGGAGGGCCCATGGGCGTGGGGGAGG
AGGAGGATGAGCGTTTCAGACGGTCGGTCGAGCTTTCCTGGGAGGAGATC
AGGCATGTCATGACGGGACAGGAGGGGGAAGGGGGGGGTGCTTTCCGTTT
CGATATGAAAAGGGAAGACTTTTGCGGGCCCGTTACCTACGCGGCGGATC
CCACGTCGATGATGCGAACAGTATACGACTGTGTCTTCTTCGTTGCCGCG
AAGAAGGGGGGGGAGGGCGATCGAGGAGACGCGGAGTGGTTGGCGCCACA
GGCGCCCGTGCAGGGTAATGTAAAAAGAGCATTAAACATTTAG

Synonyms

Publications