rna3449, rna3449 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3449
Unique Name	rna3449
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1480
Alignment location	CM002461.1:441031..443613 -

Link to JBrowse

Properties


Property Name	Value
Product	galactose-proton symporter
Orig transcript id	gnl\|cribi\|Naga_100010g2.6109.mrna
Orig protein id	gnl\|cribi\|Naga_100010g2.6109
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:441031..443613 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g2	gene3323	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27139.1	cds3440	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3449	rna3449-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:441031..443613-
coding sequence from alignment at CM002461.1:441031..443613-

mRNA sequence

>rna3449 ID=rna3449|Name=rna3449|organism=Nannochloropsis gaditana|type=mRNA|length=1480bp
TGTTACAAGTGCCGCTTTCGATATTGGCTACCCGGAGGTACGTGACGACA
TGCACTCGATGGAAACGTATGTGTAAGTGCGTGCCACATCAAAGCGCGTG
GATGGAGAGTAGATAATATAAATCGAAGTTTTATGTTAAGAGCGCCCACT
TTACATGTGGATGTCTAACGCATGAACGGAAAGAAGAGAGAACTCAGCCC
TAGACACGTTTTATCGCGCCCTCAGGTCCTCAGCTAGGAGAGCGCTTGTT
CATCCGCCTTCTTTTCTCGTCGTTCACGTAAGAAGAGAGACCTATACCCG
TCGCTTCGAGCATGGCCGCTTCTTCGGCGGCATCAGCAGTAGCAGCAACG
TCTGCGCGTCCTTATATTTCCTCCCGCTTCACGGAAGTCGCCAAGGCGTT
GCTAGCTGAAGACTGGGCCCGGGTGGACACGCGGGTGCCTCACTTGCTGG
CCCGCCTCACGGAGCGAGGTGCGCACCAATGCTGGCACAAGCATGGAACT
TTTAAGCAGCATCTTTTGGGGGTCTGGAAGATCTTGTCTTTGTGGGAGCA
ACCTCAAACCTTGGCCCGCTGTGGTCTATATCATTCGGCGTATTCGAATT
CTTATGTCAACCTAGCTATCTTCAAAGCCGGCGTGGACAGGGATTTAGTG
CAGAAAGATTGTGGCAAAGAAGCGGAAGAGCTGATTTACAAGTTTTGTGT
GGTAGACAGGCAGAAAATTATCGTGGACACCCTCTTTCCGATGGAACGCG
TCCCTGCTGAAGGCCTTGTCGTGCCGCACATCCACACGGGAGACAGCGTG
CACTTATCAAGCAAGGTACTGGGCCAGCTATTGGTGATGACGATGGCAGA
CGTGGCGGATCAGCAGTATGGATGGCAAGACGACTTGTTCGGTGACGCCC
AATGGCGGCCTTGTCAAGCTAGCAATGAAGACCATGAGGAGACTAAAAAA
AGCGACAGCGAAGTCATGCACCCATTCACCTTGTGGCCCGGCATTTCAAA
ACCCGGACTCTGGATGTACTTCGTCAGTAAGCTGGCCACTTTGGCTCGGA
CATGCCCGATGCCGGTCCGTCCCCCTGTCTTTAACGAAGGCCAATTCCTC
TTGGATCGAACCGCGGAACGCCAGGCCCGGGACTTGTATTGGGAAGTGAT
GTCGGAGGACCCCCGGGACAAAGGCAAAATTGACAAGAGTATCTCACGCC
TCACACAAGCGCTCGCCCTGAACCCTTTCCTCGCTGAGCCTCACACCTTG
CTGGCACAGTGTCATCTCGTCAATGGCGACTTCCCGAGGGCGCTGCTGGC
AGCAGAGAAGTCGATAGACTTGATGCTCGAATGGGGAACCAACTGGGACA
AGCGTGTGTCCTTTGAGGCCTGGATGGCCTGGACGCGCGTCCTCCGACAG
CATGCCGAAGACAAGACGCCCTGGCATTCAAATGCGTGGGGAGTCATCAA
TTTGGGGCTAGTACGGTGACAGGAGGGGGG

protein sequence of rna3449

>rna3449-protein ID=rna3449-protein|Name=rna3449|organism=Nannochloropsis gaditana|type=polypeptide|length=579bp
MSHQHSCEVTSVYTMRIPLCPSRTCKVILLPDVCSSHFTPQMPLPPRPLG
VMTLGSVTPRLWASAFTIGLSSLLFGYSLACLNTVITCSSTPCPKGSILT
NLNLSLEEQQLATAMTIIGAMLGGLFASYPNDHFGRRKSLLFNNIFFLIG
GVLTAIASLDSILVGRFLLGLGTGVESMVAPVLLSEIASNETRGAITSLH
QLNITLGILISNLIGYGFVPNVDGGWRYVQLFVVLPAALQVLLFWLVPES
PRWLLRADRREDARSVLSHLRICKKGDAAAQAAGAELVEAELVALEQELG
SSMKQPTAGWKETFSYGKAMRIGMLMMFFSAMTGINTVIFYSTTIFALAG
VENAFLGTVLVGILNVIITMVSGYLVDKAGRKVLLTGGTWIMLVSLLLLG
SILLADGVPPVAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRS
KAYSIFVTSNWTANLVISLVTLSLIDALGKSLASAGSSVEKQEQLGVALL
YMCFAGMCVLCLLFLYFLVPETKHQHEEKAAHHHRRVSSEFAVADVDIIT
EVVHCVEAHGEGPVDAPADAAGKQPVSMV

mRNA from alignment at CM002461.1:441031..443613-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3449 ID=rna3449|Name=rna3449|organism=Nannochloropsis gaditana|type=mRNA|length=2583bp|location=Sequence derived from alignment at CM002461.1:441031..443613- (Nannochloropsis gaditana)
AGTCTGCAAAACGGTCGGGTCAATCGCTTCCATCACTTAGCTTTGCCGGC
GCCCGTCGCCTACCTCGCTCCTTGCACAATGAATGTCTCATCAGCACTCA
TGTGAAGTGACGTCTGTGTACACCATGCGCATACCTTTGTGCCCGTCACG
TACTTGTAAGGTCATTTTGCTGCCGGATGTGTGCTCTTCTCACTTCACCC
CACAAATGCCTCTCCCACCCAGGCCCTTAGGAGTCATGACGCTGGGGTCT
GTCACCCCGCGACTGTGGGCAAGTGCTTTCACCATTGGTCTATCGTCACT
TCTGTTTGGTTACAGCCTGGCATGCTTGAATACGGTGATCACTTGCTCCT
CTACGCCTTGCCCAAAGGGCTCAATCCTTACAAACCTGAATCTAAGTCTG
GAGGAGCAGCAATTGGCCACTGCCATGACAATTATTGGCGCGATGCTGGG
AGGGCTTTTCGCTTCCTATCCAAATGATCACTTTGGCCGGCGCAAATCCC
TTCTGTTCAACAACATTTTTTTCCTGATAGGCGGCGTGCTCACGGCAATA
GCCTCCCTGGACTCCATCCTCGTCGGCCGCTTCTTGCTCGGACTGGGCAC
AGGGGTCGAGTCGATGGTGGCGCCTGTTTTGCTATCTGAAATTGCATCGA
ACGAAACTCGAGGAGCTATCACGAGCTTGCATCAGCTTAACATCACGCTG
GGCATTCTAATTAGCAATTTGATCGGCTACGGCTTTGTTCCCAACGTGGA
CGGAGGCTGGCGGTATGTCCAGCTCTTTGTCGTCTTGCCTGCAGCGCTGC
AAGTGCTTCTTTTCTGGTTGGTTCCCGAGTCCCCCCGCTGGTTACTCCGG
GCTGACCGTAGAGAAGATGCCAGGAGTGTTTTAAGCCATCTTCGGATATG
CAAGAAGGGCGACGCGGCGGCTCAGGCAGCCGGAGCGGAACTCGTTGAGG
CTGAGCTTGTTGCCTTGGAGCAGGAGTTGGGATCCAGCATGAAGCAACCC
ACAGCCGGCTGGAAAGAGACTTTTTCTTACGGTAAAGCGATGCGGATCGG
AATGTTGATGATGTTTTTTAGCGCCATGACAGGCATCAACACGGTTATTT
TCTACTCCACCACCATTTTCGCGTTGGCGGGAGTGGAAAATGCCTTTTTG
GGCACCGTGCTGGTGGGTATTTTGAATGTCATCATAACGATGGTGTCGGG
CTACCTTGTAGACAAGGCGGGGCGGAAAGTCCTCTTGACGGGCGGGACCT
GGATCATGCTCGTCAGCCTCCTTCTTTTGGGCAGCATCCTGCTGGCGGAT
GGCGTGCCCCCAGTCGCGATCTCGATTGTGGCCGTCGGATCTATGCTCCT
CTACGTATTTGGCTTCGCCATCGGTATCGGAGCTGTGCAGTGGGTGGTAG
TGGGCGAGGTGGTTCCCACCAAGATCCGATCCAAAGCGTACTCGATCTTT
GTCACTAGCAACTGGACCGCAAATCTTGTCATCTCCCTCGTTACGCTTTC
CCTCATCGACGCCCTGGGTAAGTCCCTGGCCTCCGCCGGGTCTTCCGTTG
AGAAACAGGAGCAGTTGGGTGTGGCTCTTTTGTACATGTGTTTCGCGGGA
ATGTGTGTCTTGTGCTTGCTCTTTCTCTACTTCCTGGTGCCGGAGACGAA
GCATCAGCACGAGGAGAAGGCTGCTCACCACCATCGTCGCGTCTCCTCCG
AGTTCGCAGTGGCTGATGTTGATATCATCACCGAGGTGGTGCACTGCGTG
GAGGCTCACGGAGAGGGCCCAGTCGACGCTCCGGCCGACGCGGCGGGCAA
GCAGCCGGTGTCAATGGTGTAGAGAAGAGAGGCAGGAACAGCGACACAAG
ATACAAGAAAGGACTAGAGCACGGGCAATTAAAGTACTTGTAAGACTGCA
ATCATCTAGGGGTGAAGTGAGTCGTAAGGAGACAGACAATGCGAAGTAAC
AGGATACCGACGCTGAAGATGATGCCGAAGGCGGTGCTCTGAAAGCCTCT
GTAACAGCAATAGCTGGAGCAATAGAACGTGTGGAATGAGAGTAGAAATG
CATGATGGGTCAGACAGGGCGTCAGTCCAGGTAGAAACGAAAAAAAAATC
CTGGAACACTTTGGTAAAGGGTCATAAGGAATTGTGAAAAAGGGGAAGGA
TATCATGGCCTAAAGCTTCGACTCGGATAAAGCTTGATGGACAAATATAT
GCATGAATGGAGCAATAGCAGGCAAGTCGCCTTGGGACGGCACTGTTTCA
CTGCCATTGGGGCGCAGTGTGGAAGCGTCGGAAGGGTTCGAGGGGGCACA
TGGGGGGGAAAGATGCATGCTTATGGGGGAGTCCATGCGAGTAACGCCTG
TGGAGAAGTGTTGTTCTGCGGTCATTGTAATAGAAGGGATGTGTGATTGC
TGTGGTGCGGCACTGGCGACCTCCCGTTGTGACAGCAGCAAAACGGGCGA
AGGACTGCCGCAATGGGGACGAAAGACATCAAATTGGAAGACATTTGCGG
GGCATCGAAGAGTCTTTGCAGTCGACATTGATGACGAGCATTCTTTCACC
CTATGTATACTATGTTCATGCATGCCCTCCTCC

Coding sequence (CDS) from alignment at CM002461.1:441031..443613-

>rna3449 ID=rna3449|Name=rna3449|organism=Nannochloropsis gaditana|type=CDS|length=1740bp|location=Sequence derived from alignment at CM002461.1:441031..443613- (Nannochloropsis gaditana)
ATGTCTCATCAGCACTCATGTGAAGTGACGTCTGTGTACACCATGCGCAT
ACCTTTGTGCCCGTCACGTACTTGTAAGGTCATTTTGCTGCCGGATGTGT
GCTCTTCTCACTTCACCCCACAAATGCCTCTCCCACCCAGGCCCTTAGGA
GTCATGACGCTGGGGTCTGTCACCCCGCGACTGTGGGCAAGTGCTTTCAC
CATTGGTCTATCGTCACTTCTGTTTGGTTACAGCCTGGCATGCTTGAATA
CGGTGATCACTTGCTCCTCTACGCCTTGCCCAAAGGGCTCAATCCTTACA
AACCTGAATCTAAGTCTGGAGGAGCAGCAATTGGCCACTGCCATGACAAT
TATTGGCGCGATGCTGGGAGGGCTTTTCGCTTCCTATCCAAATGATCACT
TTGGCCGGCGCAAATCCCTTCTGTTCAACAACATTTTTTTCCTGATAGGC
GGCGTGCTCACGGCAATAGCCTCCCTGGACTCCATCCTCGTCGGCCGCTT
CTTGCTCGGACTGGGCACAGGGGTCGAGTCGATGGTGGCGCCTGTTTTGC
TATCTGAAATTGCATCGAACGAAACTCGAGGAGCTATCACGAGCTTGCAT
CAGCTTAACATCACGCTGGGCATTCTAATTAGCAATTTGATCGGCTACGG
CTTTGTTCCCAACGTGGACGGAGGCTGGCGGTATGTCCAGCTCTTTGTCG
TCTTGCCTGCAGCGCTGCAAGTGCTTCTTTTCTGGTTGGTTCCCGAGTCC
CCCCGCTGGTTACTCCGGGCTGACCGTAGAGAAGATGCCAGGAGTGTTTT
AAGCCATCTTCGGATATGCAAGAAGGGCGACGCGGCGGCTCAGGCAGCCG
GAGCGGAACTCGTTGAGGCTGAGCTTGTTGCCTTGGAGCAGGAGTTGGGA
TCCAGCATGAAGCAACCCACAGCCGGCTGGAAAGAGACTTTTTCTTACGG
TAAAGCGATGCGGATCGGAATGTTGATGATGTTTTTTAGCGCCATGACAG
GCATCAACACGGTTATTTTCTACTCCACCACCATTTTCGCGTTGGCGGGA
GTGGAAAATGCCTTTTTGGGCACCGTGCTGGTGGGTATTTTGAATGTCAT
CATAACGATGGTGTCGGGCTACCTTGTAGACAAGGCGGGGCGGAAAGTCC
TCTTGACGGGCGGGACCTGGATCATGCTCGTCAGCCTCCTTCTTTTGGGC
AGCATCCTGCTGGCGGATGGCGTGCCCCCAGTCGCGATCTCGATTGTGGC
CGTCGGATCTATGCTCCTCTACGTATTTGGCTTCGCCATCGGTATCGGAG
CTGTGCAGTGGGTGGTAGTGGGCGAGGTGGTTCCCACCAAGATCCGATCC
AAAGCGTACTCGATCTTTGTCACTAGCAACTGGACCGCAAATCTTGTCAT
CTCCCTCGTTACGCTTTCCCTCATCGACGCCCTGGGTAAGTCCCTGGCCT
CCGCCGGGTCTTCCGTTGAGAAACAGGAGCAGTTGGGTGTGGCTCTTTTG
TACATGTGTTTCGCGGGAATGTGTGTCTTGTGCTTGCTCTTTCTCTACTT
CCTGGTGCCGGAGACGAAGCATCAGCACGAGGAGAAGGCTGCTCACCACC
ATCGTCGCGTCTCCTCCGAGTTCGCAGTGGCTGATGTTGATATCATCACC
GAGGTGGTGCACTGCGTGGAGGCTCACGGAGAGGGCCCAGTCGACGCTCC
GGCCGACGCGGCGGGCAAGCAGCCGGTGTCAATGGTGTAG

Synonyms

Publications