rna3447, rna3447 (mRNA) Nannochloropsis gaditana

Overview
Namerna3447
Unique Namerna3447
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length234
Alignment locationCM002461.1:437835..438238 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g46.7725.mrna
Orig protein idgnl|cribi|Naga_100038g46.7725
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:437835..438238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g46gene3321Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3447rna3447-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27270.1cds3438Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3447 ID=rna3447|Name=rna3447|organism=Nannochloropsis gaditana|type=mRNA|length=234bp
ATGTTTATTGAGAATTACACTCCCGGTCAACTGCTTTTTGTACCAAAACG
ACCGGCGGGGTTTTTAAGAGATTTCGAACAGCTTATAAAGTACTTTAAAT
ATAACATACATGCTATTGACCTTTCTTGTGCTTTTGACTCCCTCGAGCTG
TTGACTACTTGTGAGTATCTAGATCTCGTGATCGTATTTTCAGCCAAAGA
ACGAACAATTCAGCATAGAAAAGATGTACATTGA
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protein sequence of rna3447

>rna3447-protein ID=rna3447-protein|Name=rna3447|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MSDHTEFEGCECSKPLIPKATKLTHGRIRNLSLSRPSCNKKSDILLAMTI
ILLGFSLYCIFPHQISTGDKALDFWRVPFLEYDCVVIFPIRKEITTRR
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mRNA from alignment at CM002461.1:437835..438238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3447 ID=rna3447|Name=rna3447|organism=Nannochloropsis gaditana|type=mRNA|length=404bp|location=Sequence derived from alignment at CM002461.1:437835..438238+ (Nannochloropsis gaditana)
ATGAGCGACCACACTGAATTCGAGGGTTGTGAATGCTCTAAACCTCTGAT
ACCTAAAGCAACAAAGCTTACCCATGGAAGAATCAGGAACCTAAGTTTGT
CGCGTCCTTCCTGCAATAAAAAAAGCGACATACTCCTTGCAATGTAAGAG
TTGTTTTCAATACAGTAGTTAAACGTGATTTGATCGCTCAACCGCCTTGC
ACCATGGAAAAGTACCTCGTGGGAACGGCAAACGCTTGAATGAACTCAAG
GACCATCATCCTGCTCGGCTTCTCGTTGTATTGTATTTTCCCCCACCAAA
TATCTACCGGTGATAAAGCCCTGGATTTTTGGAGGGTCCCTTTTCTAGAG
TACGATTGTGTAGTGATCTTTCCCATTCGAAAAGAAATAACAACGCGAAG
ATGA
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Coding sequence (CDS) from alignment at CM002461.1:437835..438238+

>rna3447 ID=rna3447|Name=rna3447|organism=Nannochloropsis gaditana|type=CDS|length=594bp|location=Sequence derived from alignment at CM002461.1:437835..438238+ (Nannochloropsis gaditana)
ATGAGCGACCACACTGAATTCGAGGGTTGTGAATGCTCTAAACCTCTGAT
ACCTAAAGCAACAAAGCTTACCCATGGAAGAATCAGGAACCTAAGTTTGT
CGCGTCCTTCCTGCAATAAAAAAAGCGACATACTCCTTGCAATGACCATC
ATCCTGCTCGGCTTCTCGTTGTATTGTATTTTCCCCCACCAAATATCTAC
CGGTGATAAAGCCCTGGATTTTTGGAGGGTCCCTTTTCTAGAGTACGATT
GTGTAGTGATCTTTCCCATTCGAAAAGAAATAACAACGCGAAGATGAATG
AGCGACCACACTGAATTCGAGGGTTGTGAATGCTCTAAACCTCTGATACC
TAAAGCAACAAAGCTTACCCATGGAAGAATCAGGAACCTAAGTTTGTCGC
GTCCTTCCTGCAATAAAAAAAGCGACATACTCCTTGCAATGACCATCATC
CTGCTCGGCTTCTCGTTGTATTGTATTTTCCCCCACCAAATATCTACCGG
TGATAAAGCCCTGGATTTTTGGAGGGTCCCTTTTCTAGAGTACGATTGTG
TAGTGATCTTTCCCATTCGAAAAGAAATAACAACGCGAAGATGA
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Synonyms
Publications