rna3446, rna3446 (mRNA) Nannochloropsis gaditana

Overview
Namerna3446
Unique Namerna3446
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2619
Alignment locationCM002461.1:437497..437799 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g45.7703.mrna
Orig protein idgnl|cribi|Naga_100038g45.7703
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:437497..437799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g45gene3320Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3446rna3446-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27248.1cds3437Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3446 ID=rna3446|Name=rna3446|organism=Nannochloropsis gaditana|type=mRNA|length=2619bp
ATGCCCCTTGCGAAGGTCGTTATCGAATCGGTGTGTTCACTTTCACGCCC
AGTTTCACCGAAAGTCAGCTCAGCAGCAACAGCAGCAGTACACGCGCCCA
AACCCACCACATACCCCCTTCTTTCGACCGGGTCTGCCTGCACTCCAGCA
CAGACTATGGCGTACCCAATGCCCCCCGGGTACCCGCACATGCCAATTGG
CATGCCACCGAGCTATGCACCGCTTCCACCCCCTCCTCCCGGCCCTCCTG
GCCACTACCAGCACCACATGCCTCCCATTCCTCGTCAGGACCCGGGTGTG
ACAAGCGTAGGAATGACTTCGGTTTGCGCTGGCGGTGGTCACAGCATTGG
GACCAAAAACGGATCTTCAGATGGTTATGGACAATCGTATCAGATGATCC
GGACTGGCAGCGATGAAAGTGGTCTCACCACAACAACGATGGGGTCTTCT
TCCACCTCTTCCTCGTCCTCGACCACCTCGTCGCAGCAGCAGCGTAAGCG
CATGCGTCTAACGTCCGAGGAGCGCTTACAACGAAGTCGAGAGCGCAATC
GTGTTCACGCCCGCAAGACTCGCAAGCGCAAGAAGGTGCAGATGGAGAGC
ATCCAGGTCACGATTGAGAATTTGCAGGAGGAGGGTCGGCGTATGCGCCT
GGCCGTCACGGAGTGGTACACGGCGAACATTTTACTCGTGATGAGGGGGC
CGGAGGCGGAGAAAGAGGAAGCGCTGAAGTCGGAAGCTCCCAACCATGCC
CCCAATAGCGGTCCTCAGTGTAAGGGCCAACCACCCGGCTCAGCGCCCGC
AGGCTCTACCATGGGAGCCAACGACGGGCTTCTCTCCAAGTACATGACGG
TGCAGTCCTTCCTGGAGCGGACGAATGCGGCCGTGGCTGCGAACAACAAG
GCCTACGAGGAGGCGCAGAGCCGGGCGGCGTCAGAGAGCGGGCTGATGGA
CGACTCGAGCAGTCTCGGGGACGCGGACGAGGCTGATGAGGGGAAGGCAG
GCGGGGCGCGCGGCCGCTGCAAGTACGCGCCCGAGGACCGAGAGCGTATC
CGTCGAGAGAGGAATCGCATTCATGCCAAGCGGACACGGGACCGGAGAAA
GCGGTTCATGGAGGAGTCGGAGAAGGTCATGACTCGCCTGCTGAAAGAGA
ACGAGGAACTGAGGCAGATGCTGGATTTGATCTACGGGGATCATGCGCCT
GTCGCTGGAAATCAACCAGGAAGAAGTCATCCCCCTCAGCCTTCACACCA
TCTGCCACCCCACCCGCAGCTTGCTCAGTCCTTCGCGCAATTTCCGTCCA
ACGGGCAAGCCCTTTATCCGGCGGCTCCCGTGCCTCAAGGAGGAGCGAGT
GGAGAAGGAAGCTCGGTCGCCTCCTCATCCACCACGTTTTCCTCGGCCTC
CTCGCAGGCCACGGGGTCTATAAGCATGACAACGGGCAAGACGCCTGAGG
GAAATAGCCATCACAGTGGCAACGGTCGTGCGCCACGTCCGGAGGGTGCG
AGAGTGGGACAAGAAGGAGGGAGTCAAGGGAGTGAACAGGAGGGACTAGG
GGATGAAGACGAAGATGATGATGAGGTGGAGGAGGAGGAGGAGGAGGACG
AGAGGGCATACAAGGCGCCGAAGCAAGTGTCACCGAGATGGTCCGAGGTC
CCGCCCTCCCAAGTGGGCGAGCACTGGGCCACGTCACGGCCCCACCTCGC
TGCCCCCAGCCACCAGTCTGGCTTGCGGTCCGTCCCTCCCTACCCCCTGT
CCTTCCCCCCGACGTCGGCCGGCACTACCCAGAACGGGGCTCCCACCGAC
GTAGGGACTGAGTACAAGGTGGAGGGGAGCAGCATGATGCGAGCCATAGC
GCCCATGGGCGTACTTTCGGCTCCCACCGCGGACGATGAATCGCGCTGTC
GGTCTCCTTTGCGCCAGCAACCTCCCATGCCGAGCATCCCCATCCAAGCT
GGAGCTGAGAGCTGCGACGTGCTTGAGGCGGGGTCGGGGAGGAAGGGGGA
GACGAAACCGGAGCCGCCGAGCATGCAGGCAACCAAGGGGTTGGAGTCGG
ACAAGGAAAGAGTGACATTATGTCACCCACTCCAGCATATTTGTAGCCAG
ATCCAGCATATCCATAGTGGTGGACAGGGAAGCGGACAGAGAGAAGTTGG
ACGTCAGTCAGTCTTCCAGTATCATCAACACAACTTGCTAGCTTTCAGAG
GAGAGAATTGGATAAAAAGGAGGTGTGAAATTAGTTGTGCCAGGCGGAAA
GTCGGAATCTGGAACAACCCTAAGGAGAGGAATGTTAAGATAGGGGAGAA
ACGAGGAAAATTTGATCGAATCGGGGGGCTGAGGAAAAGCCCAGTAGATC
TTCAAGGGTGGATTGGACAGTCTGAAATTGTATGCGACAGAGTTATCTTG
TTGTGGGCCGACGAATGTGCATATGTCTCTGAAGGCAAAACGTTTGACAG
ACGGAAACCGACGGCAGGGATAAGATGTCAAGCACGCAAACGGAATGGCC
GAGAAACTGAGTTTCAAAAATATAGGACTCGATCATCATTTTTGCGTGCG
TTTTGCTTCATCGCTTCATCGCTTCCAGGACAAGGAACAGGAACTCTACG
AAGAAGAGCAACCCATTGA
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protein sequence of rna3446

>rna3446-protein ID=rna3446-protein|Name=rna3446|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MFIENYTPGQLLFVPKRPAGFLRDFEQLIKYFKYNIHAIDLSCAFDSLEL
LTTCEYLDLVIVFSAKERTIQHRKDVH
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mRNA from alignment at CM002461.1:437497..437799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3446 ID=rna3446|Name=rna3446|organism=Nannochloropsis gaditana|type=mRNA|length=303bp|location=Sequence derived from alignment at CM002461.1:437497..437799+ (Nannochloropsis gaditana)
ATGTTTATTGAGAATTACACTCCCGGTCAACTGCTTTTTGTACCAAAACG
ACCGGCGGGGTTGTAAATAGGAATTACGGTGCATGTATACATGTCCTCAA
ATTCGTGACAACCTTTGCCATGCACGTCGAGTTTAAGAGATTTCGAACAG
CTTATAAAGTACTTTAAATATAACATACATGCTATTGACCTTTCTTGTGC
TTTTGACTCCCTCGAGCTGTTGACTACTTGTGAGTATCTAGATCTCGTGA
TCGTATTTTCAGCCAAAGAACGAACAATTCAGCATAGAAAAGATGTACAT
TGA
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Coding sequence (CDS) from alignment at CM002461.1:437497..437799+

>rna3446 ID=rna3446|Name=rna3446|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002461.1:437497..437799+ (Nannochloropsis gaditana)
ATGTTTATTGAGAATTACACTCCCGGTCAACTGCTTTTTGTACCAAAACG
ACCGGCGGGGTTTTTAAGAGATTTCGAACAGCTTATAAAGTACTTTAAAT
ATAACATACATGCTATTGACCTTTCTTGTGCTTTTGACTCCCTCGAGCTG
TTGACTACTTGTGAGTATCTAGATCTCGTGATCGTATTTTCAGCCAAAGA
ACGAACAATTCAGCATAGAAAAGATGTACATTGAATGTTTATTGAGAATT
ACACTCCCGGTCAACTGCTTTTTGTACCAAAACGACCGGCGGGGTTTTTA
AGAGATTTCGAACAGCTTATAAAGTACTTTAAATATAACATACATGCTAT
TGACCTTTCTTGTGCTTTTGACTCCCTCGAGCTGTTGACTACTTGTGAGT
ATCTAGATCTCGTGATCGTATTTTCAGCCAAAGAACGAACAATTCAGCAT
AGAAAAGATGTACATTGA
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Synonyms
Publications