rna3423, rna3423 (mRNA) Nannochloropsis gaditana

Overview
Namerna3423
Unique Namerna3423
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length240
Alignment locationCM002461.1:384583..385754 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g19.7722.mrna
Orig protein idgnl|cribi|Naga_100038g19.7722
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:384583..385754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g19gene3297Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3423rna3423-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27267.1cds3414Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3423 ID=rna3423|Name=rna3423|organism=Nannochloropsis gaditana|type=mRNA|length=240bp
ATGCACACATGGGACATTTTTTTGGCCGCATCCCTCCAGAAAGTTGAATA
TGACTTGAACGTTTGCACTGTGTTGCACGTACTTTTCTGCGTGCATATTG
TATCATTGGATTTTCGAGGGAGCATAACTTTTTTACGACGCCAAAGGCTG
CCTTGCCACTGGGATGCTGTTTGGAAGATACACCATACTTTCTCGGCGCG
CAGCGCAATGCCCACGTTGAAGTCGCAACTTGACGCTTGA
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protein sequence of rna3423

>rna3423-protein ID=rna3423-protein|Name=rna3423|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MASPGDVTNTNSGGNTDKQGGKKNGAVVLWAASSPTPASLRAGEKGMKKP
LSPDFIKRPASSEPDRDLDASNLFGDDNGGLILPHPHVARTTTPTSTARL
SSASSITTSTSVVSTPAPTANAVGAQSYSTPTNHLKSCHRIPAASATTSQ
VIPQPSESPSPPVPKASFLRPWGPAFGMKEPSDFASLILVSRKRQTPASA
TMEGSLPACAAASEKAKATAPCVSETSSDLPSPWSLLHGSPTFGAGRRGQ
RKRNAREDLETAACELVKRVRVESAVSAQLREDVLSLLRGPCATDNVSRE
TT
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mRNA from alignment at CM002461.1:384583..385754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3423 ID=rna3423|Name=rna3423|organism=Nannochloropsis gaditana|type=mRNA|length=1172bp|location=Sequence derived from alignment at CM002461.1:384583..385754- (Nannochloropsis gaditana)
ATGGCATCACCAGGAGACGTGACTAATACAAATAGCGGCGGTAATACCGA
CAAGCAAGGTGGTAAAAAGAATGGTGCGGTTGTTTTGTGGGCGGCATCAA
GCCCCACGCCAGCTTCGTTGCGGGCCGGCGAAAAAGGCATGAAAAAGCCA
CTTTCACCCGATTTCATCAAAAGACCGGCATCGTCAGAACCTGACAGAGA
TCTTGATGCTTCAAACCTCTTCGGAGATGACAATGGAGGCCTTATACTCC
CCCACCCGCACGTAGCAAGGACTACAACTCCCACGAGTACTGCTCGTCTT
TCCAGTGCCTCATCCATCACAACCTCTACGAGCGTCGTCAGCACCCCTGC
ACCCACAGCCAATGCTGTGGGTGCGCAAAGTTATTCTACACCTACAAACC
ATCTTAAATCCTGCCACCGAATTCCTGCAGCATCAGCAACGACCTCACAA
GTGATACCCCAACCGTCGGAAAGTCCATCCCCACCCGTTCCCAAGGCCTC
ATTTTTACGGCCTTGGGGTCCAGCTTTCGGTATGAAGGAGCCGTCAGATT
TCGCCTCTCTGATCCTGGTGAGCAGGAAGAGACAGACACCAGCCTCGGCC
ACAATGGAGGGATCTCTACCAGCATGTGCAGCTGCATCGGAGAAAGCAAA
AGCAACGGCGCCTTGTGTATCAGAAACTTCCTCGGACCTGCCCTCTCCTT
GGTCCCTCCTGCATGGCTCTCCCACATTCGGGGCCGGGCGGCGTGGGCAG
CGGAAAAGGAACGCGAGGGAGGATTTGGAGACCGCGGCGTGCGAGCTTGT
CAAACGAGTCCGGTGAGTGACGTTTCTTCGAGGGGCACGGAGGGTAAAGA
TGGAAGGCAGGGGCAGATCTTGGATTGGTTCGAACTGAAGGAGGGAATGA
GACGTGCATGGAGAGGGGTGGGGAAGTGCGGTCAACTAGGGGGGGCGAGA
GCAAAAGCCACAGTGTTCGAGGCACGCTCTGGTTTTGTCAGGCAAATGTG
ATGGAGGGGTTGAGAAGTCTAGTCAAATGAGTGGTTCTACTGATGCGTCA
TCGCTTCTCGTCCTCTTTCGCACAGGGTGGAAAGCGCGGTGTCAGCGCAG
CTGCGAGAAGACGTGCTAAGTCTTCTGAGAGGCCCATGCGCTACGGACAA
CGTTTCTCGTGAGACGACTTAA
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Coding sequence (CDS) from alignment at CM002461.1:384583..385754-

>rna3423 ID=rna3423|Name=rna3423|organism=Nannochloropsis gaditana|type=CDS|length=1818bp|location=Sequence derived from alignment at CM002461.1:384583..385754- (Nannochloropsis gaditana)
GGTGGAAAGCGCGGTGTCAGCGCAGCTGCGAGAAGACGTGCTAAGTCTTC
TGAGAGGCCCATGCGCTACGGACAACGTTTCTCGTGAGACGACTTAAATG
GCATCACCAGGAGACGTGACTAATACAAATAGCGGCGGTAATACCGACAA
GCAAGGTGGTAAAAAGAATGGTGCGGTTGTTTTGTGGGCGGCATCAAGCC
CCACGCCAGCTTCGTTGCGGGCCGGCGAAAAAGGCATGAAAAAGCCACTT
TCACCCGATTTCATCAAAAGACCGGCATCGTCAGAACCTGACAGAGATCT
TGATGCTTCAAACCTCTTCGGAGATGACAATGGAGGCCTTATACTCCCCC
ACCCGCACGTAGCAAGGACTACAACTCCCACGAGTACTGCTCGTCTTTCC
AGTGCCTCATCCATCACAACCTCTACGAGCGTCGTCAGCACCCCTGCACC
CACAGCCAATGCTGTGGGTGCGCAAAGTTATTCTACACCTACAAACCATC
TTAAATCCTGCCACCGAATTCCTGCAGCATCAGCAACGACCTCACAAGTG
ATACCCCAACCGTCGGAAAGTCCATCCCCACCCGTTCCCAAGGCCTCATT
TTTACGGCCTTGGGGTCCAGCTTTCGGTATGAAGGAGCCGTCAGATTTCG
CCTCTCTGATCCTGGTGAGCAGGAAGAGACAGACACCAGCCTCGGCCACA
ATGGAGGGATCTCTACCAGCATGTGCAGCTGCATCGGAGAAAGCAAAAGC
AACGGCGCCTTGTGTATCAGAAACTTCCTCGGACCTGCCCTCTCCTTGGT
CCCTCCTGCATGGCTCTCCCACATTCGGGGCCGGGCGGCGTGGGCAGCGG
AAAAGGAACGCGAGGGAGGATTTGGAGACCGCGGCGTGCGAGCTTGTCAA
ACGAGTCCGGGTGGAAAGCGCGGTGTCAGCGCAGCTGCGAGAAGACGTGC
TAAGTCTTCTGAGAGGCCCATGCGCTACGGACAACGTTTCTCGTGAGACG
ACTTAAATGGCATCACCAGGAGACGTGACTAATACAAATAGCGGCGGTAA
TACCGACAAGCAAGGTGGTAAAAAGAATGGTGCGGTTGTTTTGTGGGCGG
CATCAAGCCCCACGCCAGCTTCGTTGCGGGCCGGCGAAAAAGGCATGAAA
AAGCCACTTTCACCCGATTTCATCAAAAGACCGGCATCGTCAGAACCTGA
CAGAGATCTTGATGCTTCAAACCTCTTCGGAGATGACAATGGAGGCCTTA
TACTCCCCCACCCGCACGTAGCAAGGACTACAACTCCCACGAGTACTGCT
CGTCTTTCCAGTGCCTCATCCATCACAACCTCTACGAGCGTCGTCAGCAC
CCCTGCACCCACAGCCAATGCTGTGGGTGCGCAAAGTTATTCTACACCTA
CAAACCATCTTAAATCCTGCCACCGAATTCCTGCAGCATCAGCAACGACC
TCACAAGTGATACCCCAACCGTCGGAAAGTCCATCCCCACCCGTTCCCAA
GGCCTCATTTTTACGGCCTTGGGGTCCAGCTTTCGGTATGAAGGAGCCGT
CAGATTTCGCCTCTCTGATCCTGGTGAGCAGGAAGAGACAGACACCAGCC
TCGGCCACAATGGAGGGATCTCTACCAGCATGTGCAGCTGCATCGGAGAA
AGCAAAAGCAACGGCGCCTTGTGTATCAGAAACTTCCTCGGACCTGCCCT
CTCCTTGGTCCCTCCTGCATGGCTCTCCCACATTCGGGGCCGGGCGGCGT
GGGCAGCGGAAAAGGAACGCGAGGGAGGATTTGGAGACCGCGGCGTGCGA
GCTTGTCAAACGAGTCCG
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Synonyms
Publications