rna3422, rna3422 (mRNA) Nannochloropsis gaditana

Overview
Namerna3422
Unique Namerna3422
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationCM002461.1:383978..384330 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g18.7700.mrna
Orig protein idgnl|cribi|Naga_100038g18.7700
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:383978..384330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g18gene3296Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3422rna3422-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27245.1cds3413Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3422 ID=rna3422|Name=rna3422|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGGACACATGGCACAAGGCGATGACGGAGAAAAACGTCGCGAATGGGTG
CAAATACGGAACGGAGCTTGAATGCCTTGTTTTCCTGGGAAAAGCCTTGT
CGAATCATGACTACCGGTTGCGCTCTTTTTTGCTACTACAGATGATGGCT
GCTTCCTTTCCTGACAGCCGGAAGGCTTTCCGAGTAAGGAAATGGCTCAC
ACGCGATTATTTGAATTTATTTCAGCATTACTCGGTTGCATAA
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protein sequence of rna3422

>rna3422-protein ID=rna3422-protein|Name=rna3422|organism=Nannochloropsis gaditana|type=polypeptide|length=79bp
MHTWDIFLAASLQKVEYDLNVCTVLHVLFCVHIVSLDFRGSITFLRRQRL
PCHWDAVWKIHHTFSARSAMPTLKSQLDA
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mRNA from alignment at CM002461.1:383978..384330+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3422 ID=rna3422|Name=rna3422|organism=Nannochloropsis gaditana|type=mRNA|length=353bp|location=Sequence derived from alignment at CM002461.1:383978..384330+ (Nannochloropsis gaditana)
ATGCACACATGGGACATTTTTTTGGGTACTCTGGAAAGACAAAGTAGGGT
AGTATTTGTACTCGTCCGGTAAGCCGCATCCCTCCAGAAAGTTGAATATG
ACTTGAACGTTTGCACTGTGTTGCACGTACTTTTCTGCGTGCATATTGTA
TCATTGGATTTTCGAGGGAGCATAACTTTTTTACGACGCCAAAGGCTGCC
TTGCCACTGGGATGCTGTTTGGAAGTCGTAGCAATTATTGAGCTTTATTG
ATGCAAAATTGTCTCTCAACGtgcatcccttcccttgaGGATACACCATA
CTTTCTCGGCGCGCAGCGCAATGCCCACGTTGAAGTCGCAACTTGACGCT
TGA
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Coding sequence (CDS) from alignment at CM002461.1:383978..384330+

>rna3422 ID=rna3422|Name=rna3422|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002461.1:383978..384330+ (Nannochloropsis gaditana)
ATGCACACATGGGACATTTTTTTGGCCGCATCCCTCCAGAAAGTTGAATA
TGACTTGAACGTTTGCACTGTGTTGCACGTACTTTTCTGCGTGCATATTG
TATCATTGGATTTTCGAGGGAGCATAACTTTTTTACGACGCCAAAGGCTG
CCTTGCCACTGGGATGCTGTTTGGAAGATACACCATACTTTCTCGGCGCG
CAGCGCAATGCCCACGTTGAAGTCGCAACTTGACGCTTGAATGCACACAT
GGGACATTTTTTTGGCCGCATCCCTCCAGAAAGTTGAATATGACTTGAAC
GTTTGCACTGTGTTGCACGTACTTTTCTGCGTGCATATTGTATCATTGGA
TTTTCGAGGGAGCATAACTTTTTTACGACGCCAAAGGCTGCCTTGCCACT
GGGATGCTGTTTGGAAGATACACCATACTTTCTCGGCGCGCAGCGCAATG
CCCACGTTGAAGTCGCAACTTGACGCTTGAATGCACACATGGGACATTTT
TTTGGCCGCATCCCTCCAGAAAGTTGAATATGACTTGAACGTTTGCACTG
TGTTGCACGTACTTTTCTGCGTGCATATTGTATCATTGGATTTTCGAGGG
AGCATAACTTTTTTACGACGCCAAAGGCTGCCTTGCCACTGGGATGCTGT
TTGGAAGATACACCATACTTTCTCGGCGCGCAGCGCAATGCCCACGTTGA
AGTCGCAACTTGACGCTTGA
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Synonyms
Publications