rna3421, rna3421 (mRNA) Nannochloropsis gaditana

Overview
Namerna3421
Unique Namerna3421
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3944
Alignment locationCM002461.1:383689..383931 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100038g17.7701.mrna
Orig protein idgnl|cribi|Naga_100038g17.7701
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:383689..383931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100038g17gene3295Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3421rna3421-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27246.1cds3412Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3421 ID=rna3421|Name=rna3421|organism=Nannochloropsis gaditana|type=mRNA|length=3944bp
ACCATAGTCCCTGGTTTCTGGTGGATACTCTCTCCTACCTTTGAAGGTCA
AAATTGTGCCACATAGCAATGACATGTTAAGTCATCACATGCTAACGTCA
TCCGTTGATATATATCTACTCAATAGGGGAACAGGATTGTCCTGTTTTGT
GCCCATTTTCGAGACAGGGACCGAACCAAGAGGAGCAAAAGAACGCTCTG
AGAGCGGCGGCCAAGCTCTTGCTGTTGCCCCTCACTCTCTTTTTGATTTT
TGGCCCCTTAATCACGTTGGGTACAAGCTCTCAACGTTTTGGATCGCTAG
CAATATCATTGATTGCGGCCTACTTTGTGTCTTGTGCGAAGCTCGTCCTG
TTCCACCCTTATAAGACAAGATCGCCTCGTCTGCAGCTCGAGTCCTTGTC
TCTCTTCAGGAAAGGCGAAAAATCCTCACAACGGAACGCACATTTCCACA
CATCTTATTCTGTTCGGACTTCGTGTCTGCATATTGAGAGTGTGAGATCC
TCCGGAGCCTGGGTGACCAGAGCTCTTCAATAAATCACACACCTCCAAAT
TAAACGAAGAGTGATATTCAAACAGACAGACCCAGCGTCAAGTCTGCAAT
GAGCAACATCCTTGCCGCAGGGGACTACGACATGCACAGAAGTAGCAATG
TGGAACTTAAGCAAGAGGCGTCAGCCAACATGAAATCAAACGCCCAGGTT
GGCCTGCATCCGTCACAGAATCAGCAGCTTCTGCAACAACAAGTGCAGCA
GCCGCAGGGACAGGAGGAGAGGGGGCCGAAGACAGCGACGCCACCATGTC
TATCAGAGGGAAGATATACCTCATTTCTGGCTCCGCTGAAATCACTGACC
TCCCCCGTGGCGTCTTCGGTGTTCGAGGCGGACGCGAAGCAGCAGCAACT
CTTGAAAGATTCCCTCACCGCAGACCTTAAACTGCTCTTGCACGAGTTTG
AACGCTTCCAGCAAGCGACAGCATTAGTGTCGAGAGAGGGCTCGAAAGAG
GTGGAGGCAATGGAGCGGGCGGCGAAAGTGGAATTCTTCCTAGGCTACAT
CGGAAAGGTGCTTCAGGAACTTGCCGGCGCCGACGCACCGAAGCTCCAGG
AATTAGAGGTTCGGATCAAGACCAGCCTCCTTCCATTGAAGGGGCAAGTG
GTGAACAAGCTTGCATCTTCCCTGCTCTCGTCCTCCGCCCTCGGTGGTCT
GCAGCATGAGCCTTCCTCCTCCGCATCCATCCCGTCGCCTTCCTCTTCTC
CTTCCTCCTCATGCAGCACCCACACCACTCCCCCCATCTCCCCCGTATCA
GGGGAGAAGATGACAGTCCAGGATGATGGCCGGAGGGAGAGGACGCATCC
GACGGCCGCCGCGCTCATGCCCTCCGTGCGAGTCCAACGCCTCGACAGCT
CCTCCAGTGGCGCCACCACCTGCTCGGAGAACTCCGAGGAGGGGCGCGGA
CAGCTTGACGATATGGAGTGCCTGAGCCTGCTCATGGAGGAAGACGGCCA
GGGACTGGGGAGGCCACAGGACAGGACGGCGGGCGGGAGGGAGTGGGGCC
TGGGCCCCGACGAGGACGTGACGGACGCGGCCAGCCTGGTGTCGGAGGAA
AGCAGCAACGTCTTCGCTCCCTCGCCCGGGGAGGCGTCGGAGATGCTGGA
GACGATCAGCAGGGGGCTGGGTCTGGGGCAAAAGAGGCTGGCCTTGTCGG
AGGGCAGCACGGGCAGCCTGGGCTTGGCCTCAGCGTCCTTCACCTCGGTT
GAGAGCATGCAGCAGCTCAAGAGGGCGCGCAGCACCGTGATTCCCAGCAT
CAGCAGCAATAGCATCAGCACCACCACCACCAGCAGCGTGAGCGTCGGCC
ATGGAAGCAGCGACGTTTCGGAACCCTCCATGTCCGTGGCGAGCGCGGAG
AAGCCTCAGGTGCGACAGGTCGAGTATCAGTGCGGGGTCTGTGCGGAATC
GTACAGCGCTGCCGCCTCCCTGAACCCCTGGTGGGCGCTGGAGAAGCAGG
AGTGCCCACAATGCAAGAAGCTGCAGATTCCTCGGATCGACATTAACCTG
CCGGCCAACACCATGGACTATCACCCCGCCCTGCTCGCGGAGGAGGGGGA
CGACGACGACGAGGAAGAGGGGCTGGGCCTGGGAGGGAGCGGATTGGTCC
CTGGGGAAGAGTTTCGGGGGATGGGGAAGGGAGGGGAGGACTCGGCGGTC
GGCGGCGGGATAGGCGTCCCGGAGGAGGAGGACGGGCAGGCCTTCTCCCC
GGCGCAAGCCTCGCAGATATTGGAGTTGATGTCGCACGCCCGGACCTGTC
CCGGCCACCACCACTCGGAGGCCCACCGCGCGGTGTGTACCTCCACCAAG
TACCTGATGCTGCATGTGAGGGACTGCGACGGGAAGACCCTGGACGGGGA
GGCCTGCGGCTTCTCCTGGTGCCGCCCTTGCAAGCACCTGCTGGGTCACC
TGGTGCGTTGTTATGAGTCGGAGCAGTGCAGCATTTGTCGTCCCCAGAAG
CGTGAGCCGTGCGAGGAAGCGGTCGCGTGCAAGAGGGAGACCAGCGGGGC
GGTGAGGGAGGGTGTGTATCGGGCACTGACGAGCTTGTGCTAATGCTTTT
CGGGCCTTGCGCGGTCTTGGTCAAGGAAGAAGGGGGGGGGGCATGCGGGC
CGATGTACGCCCTTTTCTCTGTTTTAAGGCCCACAGGACGATTAGACGCG
AAATTGCACGATCTATATGAGGGACGGACGCAGTTCCTCATGTATACTGA
GCAAATGAATTCATGGGGAGGAGGGGGTGAGGAGGCGGTGCATGGAAGGC
GTTAGACCCGGCATCAGCGCCATAGTCGGGTCTCGGATTGAACGCTTGAG
GAGATGGTGGCGCGGAAGGACGTATTGGAGAGAAGGGATAGCAAGGAAGG
AGGCGGAAGGCCGCTAGTGCATGTATGCCTTTGAGAAGAAAGTGGCCGAG
GCGGCGTACGAACGGGAGTCCTTGCCACGATTGCATATATGCATGGGAAT
CACTTCAAAACAACTCCAGCTACATGGCAACAGCCCAAACAGACGAGAGG
GACGGAGATAGAGAGGAGACCATACTCCAACTGTTCAGGTGGCTTTCGCC
AGCCCCACGACCGACGAAACCAACTCGTCGTAAATTTATGTCAGTATTGC
CATGTCAGTGCGTGTAGGTTGCAGGCAGATTGTGTCATTAGCTTGGCTCT
TCTGTCTGGCCATGTATTTTGTCGGGAAATGTAATGCATACGAATTGCCG
TATGTAGTAGAGTAGGACGTGATGTTTGGAAGAGTAGGGGATAAAGTAGT
CAAGAAACGCTAATTTTACATGGTGTTCAGATGCTGGAGCTGTATTGATG
CGAGGAATGTCGATCGATTTCGGAAATGCTTATACAGGTTGGTGGGGAGG
GTGGTAGGGAGCTAAATAGCGGAGAGACAAGTCAGCGATTGGTGTCTTAG
TATTCGAGGACCGGCGGGGAAGATATATTTGAGTCCTCCATTCGAGAAAT
ACTTGTGAGCGCGGGCGACCCTGCAAGAGGCGTGGGAATGTGTTACAGGG
ATGGCGACGTGCATAAAGGGAGGAAGCGGAGGCTTCGACGCAATAAGGGA
AACAAGGCGGCGTTGAATGACCGACTGATATGAGAACGGAAGACGAGAGA
TCAAGTGGAGGAGTATGACAAGCCAGGGCTAGGAGAGAGGGCAGAGGGAC
CGAGCGACGGGGTCGCTGCCCTCTCTGGGTCGCTTCGATTGCTCAGTTAC
TCCTCCGCAGTGTGACATGCGAGGGCCAGGATTGTACGAGGATGAGACGA
GAGTGAATATTGAGTAGATTGCAGTGGCGGGGATGGTTTGTAGGGAAGGC
AAGGGATGAACGCGAGGATAAACGGCATAAACAGTGACATATTTGGAAGA
AAAAAAACTCAGCCTTCAAGCCCCAAGCACAATGTTGACATAGA
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protein sequence of rna3421

>rna3421-protein ID=rna3421-protein|Name=rna3421|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MDTWHKAMTEKNVANGCKYGTELECLVFLGKALSNHDYRLRSFLLLQMMA
ASFPDSRKAFRVRKWLTRDYLNLFQHYSVA
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mRNA from alignment at CM002461.1:383689..383931+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3421 ID=rna3421|Name=rna3421|organism=Nannochloropsis gaditana|type=mRNA|length=243bp|location=Sequence derived from alignment at CM002461.1:383689..383931+ (Nannochloropsis gaditana)
ATGGACACATGGCACAAGGCGATGACGGAGAAAAACGTCGCGAATGGGTG
CAAATACGGAACGGAGCTTGAATGCCTTGTTTTCCTGGGAAAAGCCTTGT
CGAATCATGACTACCGGTTGCGCTCTTTTTTGCTACTACAGATGATGgct
gcttcctttcctgacAGCCGGAAGGCTTTCCGAGTAAGGAAATGGCTCAC
ACGCGATTATTTGAATTTATTTCAGCATTACTCGGTTGCATAA
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Coding sequence (CDS) from alignment at CM002461.1:383689..383931+

>rna3421 ID=rna3421|Name=rna3421|organism=Nannochloropsis gaditana|type=CDS|length=243bp|location=Sequence derived from alignment at CM002461.1:383689..383931+ (Nannochloropsis gaditana)
ATGGACACATGGCACAAGGCGATGACGGAGAAAAACGTCGCGAATGGGTG
CAAATACGGAACGGAGCTTGAATGCCTTGTTTTCCTGGGAAAAGCCTTGT
CGAATCATGACTACCGGTTGCGCTCTTTTTTGCTACTACAGATGATGgct
gcttcctttcctgacAGCCGGAAGGCTTTCCGAGTAAGGAAATGGCTCAC
ACGCGATTATTTGAATTTATTTCAGCATTACTCGGTTGCATAA
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Synonyms
Publications