rna342, rna342 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna342
Unique Name	rna342
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2610
Alignment location	CM002455.1:843257..845677 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g153.1854.mrna
Orig protein id	gnl\|cribi\|Naga_100003g153.1854
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:843257..845677 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g153	gene330	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna342	rna342-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30337.1	cds342	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:843257..845677+
coding sequence from alignment at CM002455.1:843257..845677+

mRNA sequence

>rna342 ID=rna342|Name=rna342|organism=Nannochloropsis gaditana|type=mRNA|length=2610bp
AGGTCTCGCTGCCACCGTCTGCCTGCGAGCAGTCATAGCAATCCATCGCC
TGTTGAAGAGCAACCTCCCCCCCGATCGTAGATGATAGGCCAGTCACCGC
CATCCTGGCCTGCCTCTGATTATTTTCCAGCTTCAACCACAAGGGTCACA
GTGCCCCCAACGTCCTATTTAATGGGAGGTTGAGAAGAGAATTGAAAGCA
CACTGAAATGGTCTCCACCACTTCAACGACATGCCTCACATTTTTGTCGT
GTTGCATATCCTCCGCATATGTTCTTGTCTGGCAGCATGGCGCAGCGCAT
TCAGGTCATCTCGCGGCATTTACAACAAAAGAAAGCGTTTGAGGAAAAGA
ATGGAGCAACACGTCGCTTGACATCATTTGAAGCTGGGCCACATATCATT
GAATATGACGCGGACGTAGATGGGCTCCATTCGAGCATCGTAGACGAAGT
GTTAACAGAAGGCGCCTTATCATTTTTGGCGGAACTTGTCCAGCATTTCA
ACAAAGACGTCTTGGAGCTTTACAGGCGGCGCGCTGAAGTCCAAACGAAA
ATTGAGACAGGAACCTACGAATTCGGATTTTCGCCCGAGACGGCGCAAAT
CCGCAAAGGCATCTGGCAGGTGGAGCCCGTCCCATCGGTGTTGCTAGATC
GTCGTGTGGACGTCGGAGATGTTGCGCCCGATGACGCGCGGGCTCTTGTT
TCCGCCTTAAATAGTGGCGCGCAGGGCGTGCAGTGCGACTTCGATGACGG
TTTCTGTCCCACCTGGCGCAACGTCTTGCTTGGTATCCGCAACGTCATGG
ATGCCTCCCAGGGCGTCCTGTGTTACCCAGATTCCGTTCGGGCCCACTCA
GTAGCAATTGTATCCAACGCTGCTGTAATGATGCTGCGGCCTCGCGCCTG
GTGTATGACAGAGATGCACTTTTACGTAAATGGGCGAGCTATTCCAGGGC
CGTTGCTAGATTATGGGCTCCTGATATATCATTGCGGCGCAGAGCTCGAG
ATGCGGGGAAAAGGCCCCTTCTTTTATTGCTCCAAAGTAGAAAATTATCT
GGAGGCACGCTTATGGAATTCCATTTTCACTTGGAGTGAAGTGAAGCTTG
GGTTGAAAAAGAACAGCGTCAAAGCCTGTGTACTTATAGAAAACATCACC
GCCTCATTCCAAATGGATGAAATCCTGTACGAGCTGCGGAATCACTCGGC
GGGCTTAAATTGCGGCATATGGGATTACTCTGCTTCATTTATTGCCCGCT
TTGCTCAGCGAAGCGATATGATTTTCCCCGACCGTACGAAGTATGTCACT
ATGGAGTGTGGCTTCATGCGTAACTACATGCGCCTTCTGGTGGACACCTG
TCACAAGCGAGGTGCGATTGCGACTACTGGGATGGCCGGACTCGTCCTTG
ATCCAAAGTGGGATAAAGCAACGCGACAGGCTAAGCTACAAGAAGTGCGG
CTCGCCAAACATTTTGAAGCTGAGAAGGGAGGATCAGACGGCGCTCTGAT
ATACGACCTCAACCTAAAAGGCCTGGTTGCAGAAGTGTTTGGAGGGGGGC
TTGGACGCCTGAACCAGTTGAATAGGCCTCTGAGTTCAGCCTCCATTGGT
CCCGCTGATTTGTTGGAGGTTCCTCCCGGTGGTATTACGCTAGAGGGTGT
ACGATTTAACACGGAAATTGTGGTCCGGTTTATCGATTCTTGGCTCCGCG
GACGAGGCTCTTTTGTTTATCGGAACTCAGCAGAAGACTCTGCTACAGCG
GAGATTTCTCGCTCTCAAATCTGGCAATGGGTGCGCCATGGCCTTTACAC
GGAAGGCAAGGATGCTATCACGCTGAGTCTGGTGATGGAATTCGCCTGCG
AGACTGCGGACGAGCTTGCTCAAGAGGGGCGAGAGGCCCAAATACCCCCT
GCACTCGTTGACGATCGGGTCGCATCGGCTTTAAGTCTCTACCGGATGCT
TGTCTCCGTACCCGTCTTTCCCCGCTTTATAACAACATTTTTGTATGAAC
AAGCGTTGTTTCATGAATTTGCGCGACGACGCTCACCCATCATGTGAGTG
TAAGCGATCTGAACGGCAAGTAGAAAGTGCCACTTTGAAGGAGCCTTGCA
TAACGGGCTAATGCACGCTATTCTCGTGAGCAGGCCTTCGCTTTCGTTGA
AATTTGTAAGGACTGTATAGAATTTGCGTAAGACTACACGAGCCATCATA
AGACAATCTCTGCGGCGTTGCGTGCGATGCGTTCACAGTGGGGCAGTAGT
CCTTCGCAGCCATGGCATAATCTTCCCCAAAAAGTGGTAGTTTACGCTCT
CATTTTATGTGCGATAGTGGCTTAGATTGGATAGTCTGGCTATCCTTTCT
CATTTTTTAAAATCTGGAATATTTCTTTCGATCATTCCGGAAAACGATAT
CTCAACATGAGAATCCACTTGTGCGGTTTTTTTTACGACCCTTCCGTTAT
GATGCTTCACATTAAGTGTATATATGAGAAGTGTATGTGTGTGTGTGAGT
ATACACTTGATAAAGTTTCGGCCCCGGAACAGCGGACTCCAGTATGTTAG
AGTAAATTTCGAAACGACGGTCCCAGAGGAAAAAGTAACCAAAATTTCTC
CGCCATGACA

protein sequence of rna342

>rna342-protein ID=rna342-protein|Name=rna342|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MSPFLFVNAKDGAEDPISKPIRFFPAFLQMFWPWSFSCVAIRFSILDTDS
LLWCCFWSRMSLGMFLLHLSLSSLLISNLPISLLFFSSVVLCSSLSSSSY
AFLETGT

mRNA from alignment at CM002455.1:843257..845677+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna342 ID=rna342|Name=rna342|organism=Nannochloropsis gaditana|type=mRNA|length=2421bp|location=Sequence derived from alignment at CM002455.1:843257..845677+ (Nannochloropsis gaditana)
ACAGGCGATGGATTGCTATGACTGCTCGCAGGCAGACGGTGGCAGCGAGA
CCTATGGTCATCAATGCACCAGAAAGACAGGGTTAGGTTGTGTGAAGAGC
CTGAAATGTCAGACTCACCGCCTTGGACTGAATTGGTCGGCCTGATGGGC
TTGCCGGTTTCGATATACGAAGACCCTTGGCCCATTTTACTCCTTTGTAG
AAAAAAAATAAGACAGCATGAACCTCGACGCATAGCAATTCGTCTCCTTA
CTGCGTGAAAGGAACATGAGCAGCGATGGATGTGTAAAATGACGATTCGC
CATAAGTCGTCCTCTTTTTGGGTCGTATACTATATAAGATATGACCTTAA
AGTTTGTGTATTTTATCATTCTATAAACCATTGATCTTCGTGTGCATCGC
CCCTTTGACCGGACATCTATCTCTAGTCTAATATCATCGCTTTCAATACT
CAGGAATGACATTGGCTCACCCACTTTTGAGTTCAAAAAAGGATGTCTTA
AAATCCATTCCATACTTTAATATCCAGTAGATTGGTCCGTGAGTCGGGTT
GGATGTCGATATGTCGAAAACATCTTGGTCAGGATACACATCTTGAGCAA
AAGGTGTTCATGTCTTATCATGGAAGCACTTATCAAACTTTTACAAATGC
GCTTGGCGAGAGATAAAGCTCCTTTATCCTCTGTGTCAATCCCTCGCTAT
GCTACTTTCATCATTAGTGTCTTTCGAAGCACTCACTAATATTTAGAGGG
CAGGTTACGTAGCTTGACATCATGTGCTGTTTCCAAGGAGATAAAGCGGC
TCGTCCGAAGAAAAGGCCTCTATCATGCGGACATGGTCTCATTTAGATCT
TTTCGTCTCATCGACAGATAGGATCTACACTCAAGTCTACTTGTCCACAT
TCGAAACGGAGATTATGGTAAAACGTCTTGAGCCATTTGGCATTTTACAG
ATTCTAAAGCTTGTGCAGAGATTTGATCCAATTTTGATTCTGGAATGTCA
CGATATATATTTTTTCCTACTCCCTCGGGGTCAATAAGCACAATCGTTTG
TCGCACAGTTCGGCCCATAAACAGGCACACAACCATATATAAGCGCGTTG
TTATGCAAATGTATGATAAAACTAATATTCAAGTGTAGCCCGCGTGTGTT
CTTCAAATTTCATACAGGTGTTGCCACTGCCAATATAAGTACGGGCGGGC
ATTCCTGAGAAGAATATAAACCCATGCAAACTCAGGTAACGAGCACATTT
TGTCCTGCTTAAAGAGAGGAAATGCCACGTCGACCGGTACTGAGTGATGA
TTACCTACCCGTAGATTATGAAATGCACGGGCTACCTCTTTGTTTGAGTC
CGAAAGAAGCGGAAACGCCAGTCTGACTTTGTCCTTAAATCCCTTGTGGG
ATTCGATGCTATGCGTAGTAGGCGGTGTTGATCGCCACAACTTAAGATTT
GTTAATGGTGGTAACAAATGAAGATAACGACTTGATGCTTAATACTTTCC
CCACTAAATTTCATAGGGAACATGAGGAACCATAAGTTTCTGTCCGGGCC
GATGAATATGAGAGAAATTCCTGACTCTGCATGTCAGAAAAAATCCGTCG
GAATGCATTGCATTGCCCGCCTTTTTGACAAGAGACGTGTCATCCTTGTT
GTAAAAGTAGATAACAGCATGCTTTGCTCGAAGGTCCGTCAGTGCCGCCA
TGTCACCATTTTTATTTGTCAATGCAAAAGATGGAGCTGAGGATCCAATT
TCTAAGCCCATTAGGTTCTTTCCTGCTTTTTTGCAAATGTTTTGGCCTTG
GTCTTTTTCCTGTGTTGCTATACGATTCAGCATACTAGATACCGATTCCT
TGCTCTGGTGCTGTTTTTGGTCAAGGATGTCACTCGGAATGTTCTTACTC
CACCTCTCTTTGTCCTCGCTTTTAATTTCTAACCTGCCAATTTCGTTACT
CTTTTTTTCAAGTGTGGTGCTTTgctcttctttgtcctcaTCAAGCTACG
CCTTCTTGGAGACAGGTACTTAATTTCTTGGCTTTTACTTCttgcgtcct
cttccacaattatctcttcctctttcccttgttGTTTTACTTTGTAGGCT
TTCTCCGCATTGTGTTGGTCTATCTGTTCACTCGTGTGCTCCTGGCGCTT
TTCTTGTTCCTGTTCCTCATTCCAACTCAGGCTCTTGGTTTCTTTGCTTt
tctgctcttcttccatctTCGGCTCCCCATGCTTCATAGTTAACGACCTT
AAGACTGAACAAATTTGATGTCTGGATATTCTCATATGAAGGTGGTGTCT
GTCTTACGTACATGGCGAACTCGCCTAAAGTCAAGATAAGAGATTTTTTC
GGGTCTCTATAGCTTTCTTGGAAATCTTGTTACGGAACTTGTAAACTTCA
CTTTCGCAACGATACTGAGGA

Coding sequence (CDS) from alignment at CM002455.1:843257..845677+

>rna342 ID=rna342|Name=rna342|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at CM002455.1:843257..845677+ (Nannochloropsis gaditana)
ATGTCACCATTTTTATTTGTCAATGCAAAAGATGGAGCTGAGGATCCAAT
TTCTAAGCCCATTAGGTTCTTTCCTGCTTTTTTGCAAATGTTTTGGCCTT
GGTCTTTTTCCTGTGTTGCTATACGATTCAGCATACTAGATACCGATTCC
TTGCTCTGGTGCTGTTTTTGGTCAAGGATGTCACTCGGAATGTTCTTACT
CCACCTCTCTTTGTCCTCGCTTTTAATTTCTAACCTGCCAATTTCGTTAC
TCTTTTTTTCAAGTGTGGTGCTTTgctcttctttgtcctcaTCAAGCTAC
GCCTTCTTGGAGACAGGTACTTAA

Synonyms

Publications