rna3418, rna3418 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3418
Unique Name	rna3418
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2226
Alignment location	CM002461.1:376156..377812 -

Link to JBrowse

Properties


Property Name	Value
Product	imidazoleglycerol-phosphate dehydratase
Orig transcript id	gnl\|cribi\|Naga_100038g11.7692.mrna
Orig protein id	gnl\|cribi\|Naga_100038g11.7692
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:376156..377812 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g11	gene3292	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27237.1	cds3409	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3418	rna3418-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:376156..377812-
coding sequence from alignment at CM002461.1:376156..377812-

mRNA sequence

>rna3418 ID=rna3418|Name=rna3418|organism=Nannochloropsis gaditana|type=mRNA|length=2226bp
ATCAAAAATTTGCTGCGGTTTGCGCTCCATTTTGGCTTTTTCACGAGACA
ATTTGGCCATGACGACTGTGTTGATATTTATAACGAAAGACTTTTCAAAT
GAAGAGGTTGCAGATTGCCGTCCACGGGGCAGCCACAATGTTATACTGCA
CAACCACACCTCTTAACCTCCCCTGCCCCCATTGATTTTCATAGCAGCCA
GCAAGAGATCTCCGTTGACAGGAGAAATGATTCATGGAAAAGCCCCCATA
CTAGCATTTATATATCGAAAAATGATTTTAGAGCACATGCGTGATTAATA
GCGCGTAACAAATTGCGTGCGCAGTCTCTTTGTAATGACATGCACATCTA
CTTTTACCTCCCCTGTCCCCTCTGCCAGATCCGGGACACACACAGAAATA
CCATGACGAACTTGTGTTTACGAAAAATAAGCGCTCTTACTCTACTTCTG
ATATACCCTGACGGTGCTTGGAGTTTCTCTACCCCAGCCCCTTCCTCCCC
ACCGCCACCGCCTTCCTGGCTAGTCGATGCCGCTGTGGGATGGGCGTCGA
TCAAAGGCCTCCAAATGGTAGCCCCGTCGAGTAGCCGAGCACAGAGCCAT
CCCATTCAATACACACATCTCCCGGTTTCCCTTTTGCCAGCCTCTTTCCC
TGCCCAAGCATTTGAAGACGTGGTTGCCGCCGCCCCTATTTTTAACGAGC
TCGTGGACCGCATCAGTCGCGACAAAGACTACCTCGGAAGTGCCTTGGCC
GAAGTCAGTGCCAGCGACGAGTTCACTGGCCAGCTTCTACGTATGTACGA
GGAAATCTACCCGTCAGGGGTCTCAGCGGCCGCCCAGCCTGTTGCCTTGG
GCCTGCACCGCTCGGATTATATGACCGATGACAGCGCGGACTGGCGTGAT
GGGAACGGAGAGGGTGTCAGCAGGCAAGCTGGCAAGCCTCGACCCCAAAA
GCGCCTCCTACAAGTGGAACTGAACACGATTGCCTCTTCTTTCGGCTGCC
TGGGCGCTGTCACTGCCGACCTCCATCGATACCTTCTCGATCGATTCTTC
CTCCCCTCGGTCGCGCTAGCTCCTCACGACGCTCCCTCCCCACCGTCCCA
TGACGATCTTCACGCCTTCCTCTCAGCTTATCTCCGCGATCACGAGTTTC
CTCTCCATCCGTCCTCTCCCCTCCCCTCGACTACGTCGTCCCCTTTAGTT
GAAGCCACCTTAAGGAGCATGCCCCCCAACCCCACCCTCTCCCGCCTCCC
CGCCGCCCTCGCCTCTGCTCACGCCTACTACAACCAGCCCCGCGCCCTGG
TTCTCTTCGTCGTGCAGCCCGGGGAGCGTAACCTCTTTGACCAGCGGTTT
TTGGAGCTGGCCCTGTGGGAGAAGCACGGCCTGCAGGTTGTGCGACTCTC
TCTTGAGGAAGTCGCTCGCCGCTGCCGCCTGGCCCCGGGGCCGACGCAGG
CGCTCTGGCTGGACGGCAGGCACGAGCTGGCGGTTGTCTACTTCCGAGCG
GGCTACACCCCGGCCGACTTCGGTTCCCCGCTTGCGTGGGATGCCAGGCT
ACTCATCGAGGCCTCGGCCGCGGTCAAGTGCCCCACCTTGGGCTATCAGC
TCGCGGGGACCAAAAAAGTCCAACAGCTCTTGTGCGAGCCGGCGGGCCTC
TCCCGCTTCCTGAGCCCTGCACAGTGCCTGGCGGCCAGACAACACTTCAC
GAGCATGTACGGATTGGGGGCGGCAGACTTAAAGGACAAAGAGGGAGGAC
CCGCACGGGCGGTCGATGCGGCGATCGCATCCCCGGGGGGTTACGTGTTG
AAGCCGCAAAGAGAAGGGGGGGGGAATAATTTGTACGGCGAAGAGATGGC
TAGGGCCTTGCGTGAATGGTCATCGGAACGATTGTCAGGGTACGTGTTGA
TGCAGCGAATCCAGGCACCAGCCAAAAACGCCTATCTTCTCCGTGAGGGA
GAAGCCGTGGGAGGTCCAGCAATCAGTGAGTTAGGCATTTTCGGAACCTT
TTTAGGGGACACCTCGTCAGAAAAAGTCATCGAGAACCAGTACGCTGGGT
ATTTGGTAAGAACAAAACTGGCACACGTGAATGAGGGGGGTGTTGCGACC
GGCTTTGCTGTTGTGGACAGCCCCATGCTAGTGAATGAATGAGGTGGGGA
GGTTAATAGCTTGCGAGACTCAAAGAGCATGTCTTGTGTACAGTTATCTA
GAAGAAAAAAATGACATTTCGATCGA

protein sequence of rna3418

>rna3418-protein ID=rna3418-protein|Name=rna3418|organism=Nannochloropsis gaditana|type=polypeptide|length=473bp
MREVQAVLFDMDGILADVAQSYRAAIVETAAFYQVTVTQDDIARQKAKGD
ANNDWVLTQRLLASHQVDVSLEEVTAKFEELYQGTSTSEGLWTKERLIVP
TGLLAEIARRCPLGMAVVTGRPRKDCEKFLKTHGLVHFFRACVCMEDGPP
KPDPFPVRQACAVLGVDPGDTLMVGDTVDDVRAALAAGSVPIAVLTPEEE
ARLTLIRTGGDTNGGHGIGSHLVAAGAKTVLRPGLAELLNWVPTMSSGAD
SMVVGAGKRRKASGGCGVPGPTRAATVSRKTKETAISASIDLDGDGNNVE
VHSGIGFLDHMLTALGKHARFHLRLSCQGDLEVDDHHTAEDCALALGEAF
DQALGVRKGIARFGSALCPLDEALARSVVDISSRPHAEVHLKLQREKVGQ
LSCEMITHVLQSFATAARLTLHVDVLRGANDHHKAESAFKATALALRQAV
ARDDSAFVPSTKGGFCRERAGGM

mRNA from alignment at CM002461.1:376156..377812-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3418 ID=rna3418|Name=rna3418|organism=Nannochloropsis gaditana|type=mRNA|length=1657bp|location=Sequence derived from alignment at CM002461.1:376156..377812- (Nannochloropsis gaditana)
CATGATGCATGCTTTCGTCCGTCTCTTGAACTTTCCTCCATAGGCTGCCG
ACCGATCGAGGCCTTCGCTAGCCTCCCCTCCCTAAGGAGGAAGTACGCCG
TGGCCGCAAGTCCCCACGTGCGCAAAAGATGCGTGAAGTCCAGGCAGTGC
TCTTCGACATGGACGGGATCCTGGCGGACGTAGCGCAGTCCTACCGGGCA
GCTATTGTGGAAACAGCCGCCTTCTACCAGGTAACGGTGACACAGGATGA
TATCGCGAGGCAAAAGGCCAAAGGGGATGCCAACAACGACTGGGTCCTGA
CGCAACGCCTGCTGGCCAGTCACCAGGTAGACGTGAGCCTCGAAGAGGTG
ACGGCCAAGTTCGAGGAATTGTACCAGGGCACAAGCACGAGTGAGGGTCT
GTGGACGAAGGAGAGACTGATCGTGCCCACGGGCCTTTTGGCCGAGATCG
CACGTCGATGCCCCCTGGGCATGGCGGTGGTGACCGGGCGGCCGCGCAAG
GACTGCGAGAAATTCTTGAAGACGCACGGCCTGGTGCATTTCTTTCGTGC
CTGCGTCTGCATGGAGGACGGGCCTCCCAAGCCGGACCCCTTCCCCGTGC
GACAGGCCTGCGCCGTGCTGGGGGTGGACCCGGGCGACACCCTCATGGTG
GGAGATACCGTCGACGACGTCCGAGCCGCCCTGGCGGCGGGCTCCGTGCC
CATTGCCGTGCTCACCCCGGAAGAGGAGGCCCGGCTCACGTTGATCAGGA
CCGGGGGCGACACGAACGGGGGCCACGGGATAGGCTCGCATTTGGTCGCG
GCGGGCGCCAAGACGGTGCTACGGCCGGGACTGGCCGAGCTCCTCAACTG
GGTCCCCACCATGAGCTCCGGGGCCGATAGCATGGTGGTCGGGGCAGGGA
AAAGGCGAAAGGCCTCTGGCGGCTGCGGCGTACCGGGGCCCACGCGGGCA
GCCACCGTGTCCCGCAAGACGAAAGAGACGGCGATTTCCGCCTCCATCGA
CCTGGACGGGGACGGGAACAACGTGGAGGTACACTCGGGCATTGGCTTCC
TCGACCACATGCTGACGGCCTTGGGAAAGCATGCCCGTTTCCACCTCCGC
CTGAGCTGTCAGGGGGACCTGGAGGTGGACGACCACCACACGGCTGAGGA
CTGCGCGTTGGCGCTCGGGGAGGCCTTCGACCAGGCACTGGGCGTACGGA
AAGGGATCGCGCGTTTCGGCTCGGCCCTTTGCCCATTGGACGAGGCGCTG
GCGCGGAGCGTGGTGGACATCTCGAGCCGGCCCCATGCGGAGGTGCACTT
GAAGCTTCAGCGGGAGAAGGTGGGGCAGCTCTCCTGCGAGATGATTACAC
ACGTGCTCCAGTCCTTCGCCACAGCCGCCCGCCTCACCCTGCACGTAGAC
GTGCTCCGTGGCGCCAACGACCATCACAAGGCAGAGAGCGCCTTCAAAGC
GACCGCCCTCGCCCTGCGCCAGGCCGTGGCTCGGGACGACTCAGCCTTTG
TGCCCAGCACCAAGGGGGGTTTTTGTAGGGAGCGGGCGGGGGGGATGTGA
AGGAGGAAGGGCGGCTGCGGGGTAGCTTGGGTCGGGTTCTTGCACAACAG
TCATCACAGAGTTTTGTGTGGTGAACAAAGTCATTAAGCATTCTGAGATC
GCTTGGG

Coding sequence (CDS) from alignment at CM002461.1:376156..377812-

>rna3418 ID=rna3418|Name=rna3418|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002461.1:376156..377812- (Nannochloropsis gaditana)
ATGCGTGAAGTCCAGGCAGTGCTCTTCGACATGGACGGGATCCTGGCGGA
CGTAGCGCAGTCCTACCGGGCAGCTATTGTGGAAACAGCCGCCTTCTACC
AGGTAACGGTGACACAGGATGATATCGCGAGGCAAAAGGCCAAAGGGGAT
GCCAACAACGACTGGGTCCTGACGCAACGCCTGCTGGCCAGTCACCAGGT
AGACGTGAGCCTCGAAGAGGTGACGGCCAAGTTCGAGGAATTGTACCAGG
GCACAAGCACGAGTGAGGGTCTGTGGACGAAGGAGAGACTGATCGTGCCC
ACGGGCCTTTTGGCCGAGATCGCACGTCGATGCCCCCTGGGCATGGCGGT
GGTGACCGGGCGGCCGCGCAAGGACTGCGAGAAATTCTTGAAGACGCACG
GCCTGGTGCATTTCTTTCGTGCCTGCGTCTGCATGGAGGACGGGCCTCCC
AAGCCGGACCCCTTCCCCGTGCGACAGGCCTGCGCCGTGCTGGGGGTGGA
CCCGGGCGACACCCTCATGGTGGGAGATACCGTCGACGACGTCCGAGCCG
CCCTGGCGGCGGGCTCCGTGCCCATTGCCGTGCTCACCCCGGAAGAGGAG
GCCCGGCTCACGTTGATCAGGACCGGGGGCGACACGAACGGGGGCCACGG
GATAGGCTCGCATTTGGTCGCGGCGGGCGCCAAGACGGTGCTACGGCCGG
GACTGGCCGAGCTCCTCAACTGGGTCCCCACCATGAGCTCCGGGGCCGAT
AGCATGGTGGTCGGGGCAGGGAAAAGGCGAAAGGCCTCTGGCGGCTGCGG
CGTACCGGGGCCCACGCGGGCAGCCACCGTGTCCCGCAAGACGAAAGAGA
CGGCGATTTCCGCCTCCATCGACCTGGACGGGGACGGGAACAACGTGGAG
GTACACTCGGGCATTGGCTTCCTCGACCACATGCTGACGGCCTTGGGAAA
GCATGCCCGTTTCCACCTCCGCCTGAGCTGTCAGGGGGACCTGGAGGTGG
ACGACCACCACACGGCTGAGGACTGCGCGTTGGCGCTCGGGGAGGCCTTC
GACCAGGCACTGGGCGTACGGAAAGGGATCGCGCGTTTCGGCTCGGCCCT
TTGCCCATTGGACGAGGCGCTGGCGCGGAGCGTGGTGGACATCTCGAGCC
GGCCCCATGCGGAGGTGCACTTGAAGCTTCAGCGGGAGAAGGTGGGGCAG
CTCTCCTGCGAGATGATTACACACGTGCTCCAGTCCTTCGCCACAGCCGC
CCGCCTCACCCTGCACGTAGACGTGCTCCGTGGCGCCAACGACCATCACA
AGGCAGAGAGCGCCTTCAAAGCGACCGCCCTCGCCCTGCGCCAGGCCGTG
GCTCGGGACGACTCAGCCTTTGTGCCCAGCACCAAGGGGGGTTTTTGTAG
GGAGCGGGCGGGGGGGATGTGA

Synonyms

Publications