rna3417, rna3417 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3417
Unique Name	rna3417
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1853
Alignment location	CM002461.1:371178..373403 -

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Properties


Property Name	Value
Product	glutathione synthetase
Orig transcript id	gnl\|cribi\|Naga_100038g10.7702.mrna
Orig protein id	gnl\|cribi\|Naga_100038g10.7702
Gene	GSS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:371178..373403 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
GSS	gene3291	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27247.1	cds3408	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3417	rna3417-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:371178..373403-
coding sequence from alignment at CM002461.1:371178..373403-

mRNA sequence

>rna3417 ID=rna3417|Name=rna3417|organism=Nannochloropsis gaditana|type=mRNA|length=1853bp
TTCCAGGAGGCAGGGTAAAGCATCTTTATTCACTCCATCAGAGACGGTGA
CGGAAAGCAAGAGCCCTGAGCCCGGCGACAAGAGAACCACCAGGAGTGCA
GAAGCAAGCATTTCTGCATCCCTGCATCTTCCTTTTTTCCTCAAGTAATT
TTCGACAATTTCTACAGCCATGGCACGGCTGCTGTTATTGTCTCTGCTCC
TTATTGCAAGCGCTCACGCGTTTCACTTCCATTCGTCCCTGTGCAAAACG
GGGGCGTCTCGGATGTCGTCTTTCAGAGCTCGCCAGCAGCGGGCTGAATC
TTCATCTCTGATGCTCGCCACTTCCCGAAGAAGCCATACGATGACAATGA
TGGCTGCCGGAAGCAAACCCAAAAAAATTGTTGTTCTAGGCGGCGATGGT
TTCTGTGGGTGGCCCACCTCCCTGTACCTCTCCGAGAAAGGCCATGACGT
TATCATCGTCGACAACCTCAGCCGACGGAACATCGACAACGAGCTTGGCT
GCTCCTCCCTCACTCCCATTGAATCTCCTGAGACTCGCGTTAAGGCATGG
GAGAAGGTGAGCGGGCGCACCATGCGCTTTGTGAATCTGGACGTGGCTAG
GGACTATCAGGAACTTGTGCAACTGTTCTTGGCCGAAAAACCTGACGCAG
TCGTGCATTTTGCGGAGCAACGCGCCGCGCCTTACTCTCAAAAAGGCGCG
AAGCAGAAGCGGTACACGGTGGACAACAACGTCTCGGGCACGAACAACCT
GCTGGTGGCGGTGGTGGAGAGCGGCCTGGACATCCATGTCGTGCATCTGG
GAACGATGGGCGTCTACGGCTATGGCACCAGTGGGGGCGAGATTCCCGAG
GGCTACATCGACGTGATCCTCCCGGGGGGGCGCCCTTCCTCCATCCTCCA
TCCTGCCTACCCCGGCTCCGTCTACCACACGACCAAGTGTCTGGACGCCC
TCCTCTTCCAGTTTTACAACAAGAACGACGGGATCCGCGTCACGGACCTG
CACCAAGGCATCGTCTGGGGCACGAACACGCCGCAGACGATCAAGGACGA
GCGACTCATCAACCGGTTCGACTACGACGGAGACTACGGCACTGTCCTGA
ACCGGTTTATCATGCAGGGGGCGCTGGGGGTGCCTCTGACGGTCTATGGG
ACGGGGGGGCAGACGCGCGGCTTCATCCACATCACGGACACGGCCCGCTG
TATCGAGATCGCCGTCTCCAACCCCCCGCAGGCAGGGGAGAAGGTGCAGA
TTTTTAACCAGATCGCAGAGACGCTCCGAGTGGGAGACCTGGCGAAACTG
GTGGCGGAGAAGACGGGGGTGGACATCAACTACCTGAAGAATCCGAGGTT
GGAGAGCGCGGAGAACGAGCTGGAGGTGGCGAATCGGAAATTCCGAGGCT
TGGGATTGGACCCGATCCTGCTGGATTCGAATTTGGGCCTCGTGGACGAG
GTCAAGACGATTGCCGCCAAGTATGCGGACAGGTGCGTGCGCGAGAAGAT
CCTCCCGGCCAGTTTTTGGAACCGAAGGCGGGAGGCGGAGTGCGAGGCAA
ACACGCTGGAGGGCGGCAAGTAAGGGTGGATGGGTAGGGAGGGACGGTGC
AGGAGGCAGATTGGCAAGTAAAGGTTGCGGTGAGGAAGGGAGAGGATGGG
GGAAGCGAAGAGGGAAAGGGCGTGGCCCCGGGCGGGGGGAACAGAAATGC
CTCCGGCCGAGGGTCAAACTCGAGACAGAACAAGAGGCGCGCGGGATTTG
ACCTTGGCCTTTCTCGGTGCTGCTTGAGCCTGCCACGGGGACGCATGGTC
GACGTGCACAGCCAATTTGATTAAAAAGAAACTCACGCGCCAACCCTATC
TGT

protein sequence of rna3417

>rna3417-protein ID=rna3417-protein|Name=rna3417|organism=Nannochloropsis gaditana|type=polypeptide|length=600bp
MHIYFYLPCPLCQIRDTHRNTMTNLCLRKISALTLLLIYPDGAWSFSTPA
PSSPPPPPSWLVDAAVGWASIKGLQMVAPSSSRAQSHPIQYTHLPVSLLP
ASFPAQAFEDVVAAAPIFNELVDRISRDKDYLGSALAEVSASDEFTGQLL
RMYEEIYPSGVSAAAQPVALGLHRSDYMTDDSADWRDGNGEGVSRQAGKP
RPQKRLLQVELNTIASSFGCLGAVTADLHRYLLDRFFLPSVALAPHDAPS
PPSHDDLHAFLSAYLRDHEFPLHPSSPLPSTTSSPLVEATLRSMPPNPTL
SRLPAALASAHAYYNQPRALVLFVVQPGERNLFDQRFLELALWEKHGLQV
VRLSLEEVARRCRLAPGPTQALWLDGRHELAVVYFRAGYTPADFGSPLAW
DARLLIEASAAVKCPTLGYQLAGTKKVQQLLCEPAGLSRFLSPAQCLAAR
QHFTSMYGLGAADLKDKEGGPARAVDAAIASPGGYVLKPQREGGGNNLYG
EEMARALREWSSERLSGYVLMQRIQAPAKNAYLLREGEAVGGPAISELGI
FGTFLGDTSSEKVIENQYAGYLVRTKLAHVNEGGVATGFAVVDSPMLVNE

mRNA from alignment at CM002461.1:371178..373403-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3417 ID=rna3417|Name=rna3417|organism=Nannochloropsis gaditana|type=mRNA|length=2226bp|location=Sequence derived from alignment at CM002461.1:371178..373403- (Nannochloropsis gaditana)
ATCAAAAATTTGCTGCGGTTTGCGCTCCATTTTGGCTTTTTCACGAGACA
ATTTGGCCATGACGACTGTGTTGATATTTATAACGAAAGACTTTTCAAAT
GAAGAGGTTGCAGATTGCCGTCCACGGGGCAGCCACAATGTTATACTGCA
CAACCACACCTCTTAACCTCCCCTGCCCCCATTGATTTTCATAGCAGCCA
GCAAGAGATCTCCGTTGACAGGAGAAATGATTCATGGAAAAGCCCCCATA
CTAGCATTTATATATCGAAAAATGATTTTAGAGCACATGCGTGATTAATA
GCGCGTAACAAATTGCGTGCGCAGTCTCTTTGTAATGACATGCACATCTA
CTTTTACCTCCCCTGTCCCCTCTGCCAGATCCGGGACACACACAGAAATA
CCATGACGAACTTGTGTTTACGAAAAATAAGCGCTCTTACTCTACTTCTG
ATATACCCTGACGGTGCTTGGAGTTTCTCTACCCCAGCCCCTTCCTCCCC
ACCGCCACCGCCTTCCTGGCTAGTCGATGCCGCTGTGGGATGGGCGTCGA
TCAAAGGCCTCCAAATGGTAGCCCCGTCGAGTAGCCGAGCACAGAGCCAT
CCCATTCAATACACACATCTCCCGGTTTCCCTTTTGCCAGCCTCTTTCCC
TGCCCAAGCATTTGAAGACGTGGTTGCCGCCGCCCCTATTTTTAACGAGC
TCGTGGACCGCATCAGTCGCGACAAAGACTACCTCGGAAGTGCCTTGGCC
GAAGTCAGTGCCAGCGACGAGTTCACTGGCCAGCTTCTACGTATGTACGA
GGAAATCTACCCGTCAGGGGTCTCAGCGGCCGCCCAGCCTGTTGCCTTGG
GCCTGCACCGCTCGGATTATATGACCGATGACAGCGCGGACTGGCGTGAT
GGGAACGGAGAGGGTGTCAGCAGGCAAGCTGGCAAGCCTCGACCCCAAAA
GCGCCTCCTACAAGTGGAACTGAACACGATTGCCTCTTCTTTCGGCTGCC
TGGGCGCTGTCACTGCCGACCTCCATCGATACCTTCTCGATCGATTCTTC
CTCCCCTCGGTCGCGCTAGCTCCTCACGACGCTCCCTCCCCACCGTCCCA
TGACGATCTTCACGCCTTCCTCTCAGCTTATCTCCGCGATCACGAGTTTC
CTCTCCATCCGTCCTCTCCCCTCCCCTCGACTACGTCGTCCCCTTTAGTT
GAAGCCACCTTAAGGAGCATGCCCCCCAACCCCACCCTCTCCCGCCTCCC
CGCCGCCCTCGCCTCTGCTCACGCCTACTACAACCAGCCCCGCGCCCTGG
TTCTCTTCGTCGTGCAGCCCGGGGAGCGTAACCTCTTTGACCAGCGGTTT
TTGGAGCTGGCCCTGTGGGAGAAGCACGGCCTGCAGGTTGTGCGACTCTC
TCTTGAGGAAGTCGCTCGCCGCTGCCGCCTGGCCCCGGGGCCGACGCAGG
CGCTCTGGCTGGACGGCAGGCACGAGCTGGCGGTTGTCTACTTCCGAGCG
GGCTACACCCCGGCCGACTTCGGTTCCCCGCTTGCGTGGGATGCCAGGCT
ACTCATCGAGGCCTCGGCCGCGGTCAAGTGCCCCACCTTGGGCTATCAGC
TCGCGGGGACCAAAAAAGTCCAACAGCTCTTGTGCGAGCCGGCGGGCCTC
TCCCGCTTCCTGAGCCCTGCACAGTGCCTGGCGGCCAGACAACACTTCAC
GAGCATGTACGGATTGGGGGCGGCAGACTTAAAGGACAAAGAGGGAGGAC
CCGCACGGGCGGTCGATGCGGCGATCGCATCCCCGGGGGGTTACGTGTTG
AAGCCGCAAAGAGAAGGGGGGGGGAATAATTTGTACGGCGAAGAGATGGC
TAGGGCCTTGCGTGAATGGTCATCGGAACGATTGTCAGGGTACGTGTTGA
TGCAGCGAATCCAGGCACCAGCCAAAAACGCCTATCTTCTCCGTGAGGGA
GAAGCCGTGGGAGGTCCAGCAATCAGTGAGTTAGGCATTTTCGGAACCTT
TTTAGGGGACACCTCGTCAGAAAAAGTCATCGAGAACCAGTACGCTGGGT
ATTTGGTAAGAACAAAACTGGCACACGTGAATGAGGGGGGTGTTGCGACC
GGCTTTGCTGTTGTGGACAGCCCCATGCTAGTGAATGAATGAGGTGGGGA
GGTTAATAGCTTGCGAGACTCAAAGAGCATGTCTTGTGTACAGTTATCTA
GAAGAAAAAAATGACATTTCGATCGA

Coding sequence (CDS) from alignment at CM002461.1:371178..373403-

>rna3417 ID=rna3417|Name=rna3417|organism=Nannochloropsis gaditana|type=CDS|length=1803bp|location=Sequence derived from alignment at CM002461.1:371178..373403- (Nannochloropsis gaditana)
ATGCACATCTACTTTTACCTCCCCTGTCCCCTCTGCCAGATCCGGGACAC
ACACAGAAATACCATGACGAACTTGTGTTTACGAAAAATAAGCGCTCTTA
CTCTACTTCTGATATACCCTGACGGTGCTTGGAGTTTCTCTACCCCAGCC
CCTTCCTCCCCACCGCCACCGCCTTCCTGGCTAGTCGATGCCGCTGTGGG
ATGGGCGTCGATCAAAGGCCTCCAAATGGTAGCCCCGTCGAGTAGCCGAG
CACAGAGCCATCCCATTCAATACACACATCTCCCGGTTTCCCTTTTGCCA
GCCTCTTTCCCTGCCCAAGCATTTGAAGACGTGGTTGCCGCCGCCCCTAT
TTTTAACGAGCTCGTGGACCGCATCAGTCGCGACAAAGACTACCTCGGAA
GTGCCTTGGCCGAAGTCAGTGCCAGCGACGAGTTCACTGGCCAGCTTCTA
CGTATGTACGAGGAAATCTACCCGTCAGGGGTCTCAGCGGCCGCCCAGCC
TGTTGCCTTGGGCCTGCACCGCTCGGATTATATGACCGATGACAGCGCGG
ACTGGCGTGATGGGAACGGAGAGGGTGTCAGCAGGCAAGCTGGCAAGCCT
CGACCCCAAAAGCGCCTCCTACAAGTGGAACTGAACACGATTGCCTCTTC
TTTCGGCTGCCTGGGCGCTGTCACTGCCGACCTCCATCGATACCTTCTCG
ATCGATTCTTCCTCCCCTCGGTCGCGCTAGCTCCTCACGACGCTCCCTCC
CCACCGTCCCATGACGATCTTCACGCCTTCCTCTCAGCTTATCTCCGCGA
TCACGAGTTTCCTCTCCATCCGTCCTCTCCCCTCCCCTCGACTACGTCGT
CCCCTTTAGTTGAAGCCACCTTAAGGAGCATGCCCCCCAACCCCACCCTC
TCCCGCCTCCCCGCCGCCCTCGCCTCTGCTCACGCCTACTACAACCAGCC
CCGCGCCCTGGTTCTCTTCGTCGTGCAGCCCGGGGAGCGTAACCTCTTTG
ACCAGCGGTTTTTGGAGCTGGCCCTGTGGGAGAAGCACGGCCTGCAGGTT
GTGCGACTCTCTCTTGAGGAAGTCGCTCGCCGCTGCCGCCTGGCCCCGGG
GCCGACGCAGGCGCTCTGGCTGGACGGCAGGCACGAGCTGGCGGTTGTCT
ACTTCCGAGCGGGCTACACCCCGGCCGACTTCGGTTCCCCGCTTGCGTGG
GATGCCAGGCTACTCATCGAGGCCTCGGCCGCGGTCAAGTGCCCCACCTT
GGGCTATCAGCTCGCGGGGACCAAAAAAGTCCAACAGCTCTTGTGCGAGC
CGGCGGGCCTCTCCCGCTTCCTGAGCCCTGCACAGTGCCTGGCGGCCAGA
CAACACTTCACGAGCATGTACGGATTGGGGGCGGCAGACTTAAAGGACAA
AGAGGGAGGACCCGCACGGGCGGTCGATGCGGCGATCGCATCCCCGGGGG
GTTACGTGTTGAAGCCGCAAAGAGAAGGGGGGGGGAATAATTTGTACGGC
GAAGAGATGGCTAGGGCCTTGCGTGAATGGTCATCGGAACGATTGTCAGG
GTACGTGTTGATGCAGCGAATCCAGGCACCAGCCAAAAACGCCTATCTTC
TCCGTGAGGGAGAAGCCGTGGGAGGTCCAGCAATCAGTGAGTTAGGCATT
TTCGGAACCTTTTTAGGGGACACCTCGTCAGAAAAAGTCATCGAGAACCA
GTACGCTGGGTATTTGGTAAGAACAAAACTGGCACACGTGAATGAGGGGG
GTGTTGCGACCGGCTTTGCTGTTGTGGACAGCCCCATGCTAGTGAATGAA
TGA

Synonyms

Publications