rna3416, rna3416 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3416
Unique Name	rna3416
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1490
Alignment location	CM002461.1:368532..370759 -

Link to JBrowse

Properties


Property Name	Value
Product	udp-sulfoquinovose synthase
Orig transcript id	gnl\|cribi\|Naga_100038g9.7712.mrna
Orig protein id	gnl\|cribi\|Naga_100038g9.7712
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:368532..370759 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g9	gene3290	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3416	rna3416-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27257.1	cds3407	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:368532..370759-
coding sequence from alignment at CM002461.1:368532..370759-

mRNA sequence

>rna3416 ID=rna3416|Name=rna3416|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp
TTGATGATTAGTTTTACCTGTCCTCTGAATGATGCCGTGGAAGTTCTCTG
GTTGCATGGCGATTGCCTAACCCTTTCCCCCTCTTCGTTATCTCTCGCCC
AGCCTCTCATTAACCATGGGCAAGAGACGCAAGCGCCGAACGCACGTTCC
CGTCAACCCCGAGCAACAGCAGAGCTTGACGGAGGAGGAACGGATACCCA
AGACGATGGTCTTGCGAAAGGGCCGAACAACACCGGAGGCGGGAGCTTTG
GTTACAGAATTACGAAGGCTCATGGGACCGGAGACTGCTGCTCGCCTCAA
GGAGAGACGTACTAATCGCATGAAAGACTTTGCAGCCGTTGCGGGACATT
TAGGGTTGACACACATTCTGTCACTGTCTCAGACACCGGCAAGTTTGAGC
TTGCATATCGCTCGTTTTCCGCGTGGCCCTACTTTGACTTTTAAGGTGGA
ACGTTACTGTCTGCAGCATCACGTTCGCGCCACCCAAAAAAGGCCATATG
AAAGCCTCAGCGCGTATCAGACAGCCCCGCTAGTTGTATTGAACAATTTT
GGGGATGTCAGTAGCCCACCGTATGTCAAATTAATGAAAATCACCTTCCA
AAACATGTTCCCCCCCTTGAACGTGAACACTGTTCGCCTGACCGACTGCC
GGCGTATCGTTCTTTACGATTATGAGGCGGACACTGGCGTGGTAGAGCAA
AGGCACTTCGCCATCCGGGCAGCACCGTCTGAGCTCCACAAAAGTGTAAA
ACGTCTGGTGCAAACCAAGATCCCCCGCCTTGGGAAAATGACTGATATCA
GCGAGTTCATCCTGGGTCCGGCCTTACAGGCTTACGGCGGCGCCGGAGCG
GCCTCCGACAGCGAGGTCGAGGACGAAGCCTCGCATGTCATCCTCCCCGA
CCGCTTTCGAGGACGTGGGAATTTGAAATCTCAAAAATCGGCGATCCGCC
TGGCGGAGCTCGGCCCTCGCCTGCGCTTGCGGCTGATGAAGGTGCAGAGG
GGCTTCATGGAGGGGGACGTGATATATCACGATTACATTAAAAAGACCCC
CGAGGAGGTGCGGGCCTTGGAGGCCAAGGCCAAGGCGGAGAGGGAATTGA
AGAAGCGAAGAAGGGAAGAGCAGGAAGGGAATGTGGCGCGAAAGGAGCTC
AAGCTGAAAGAGGCACAGGAAAGAAAAATAGAGAGGCAAGCCGCTCGGGC
AGCAAAGAGGGAGGCAGAGGACCGAGGGGAGGGGCCGGACGAGCAGGGCG
GGTTGGCGGAGGGATAGGCCAGCTTGTCCGAGGTGAGCGAGGACGCAGGG
GAGGGGCGGATGGGCGAGCGAGCGCGGCGGTCCAACTCAAAAGAAAAGGC
AGGATTCTGAGACGAGGAGTCCGTGGCGACACAGATAGGGTTGGCGCGTG
AGTTTCTTTTTAATCAAATTGGCTGTGCACGTCGACCATGCGTCCCCGTG
GCAGGCTCAAGCAGCACCGAGAAAGGCCAAGGTCAAATCC

protein sequence of rna3416

>rna3416-protein ID=rna3416-protein|Name=rna3416|organism=Nannochloropsis gaditana|type=polypeptide|length=467bp
MARLLLLSLLLIASAHAFHFHSSLCKTGASRMSSFRARQQRAESSSLMLA
TSRRSHTMTMMAAGSKPKKIVVLGGDGFCGWPTSLYLSEKGHDVIIVDNL
SRRNIDNELGCSSLTPIESPETRVKAWEKVSGRTMRFVNLDVARDYQELV
QLFLAEKPDAVVHFAEQRAAPYSQKGAKQKRYTVDNNVSGTNNLLVAVVE
SGLDIHVVHLGTMGVYGYGTSGGEIPEGYIDVILPGGRPSSILHPAYPGS
VYHTTKCLDALLFQFYNKNDGIRVTDLHQGIVWGTNTPQTIKDERLINRF
DYDGDYGTVLNRFIMQGALGVPLTVYGTGGQTRGFIHITDTARCIEIAVS
NPPQAGEKVQIFNQIAETLRVGDLAKLVAEKTGVDINYLKNPRLESAENE
LEVANRKFRGLGLDPILLDSNLGLVDEVKTIAAKYADRCVREKILPASFW
NRRREAECEANTLEGGK

mRNA from alignment at CM002461.1:368532..370759-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3416 ID=rna3416|Name=rna3416|organism=Nannochloropsis gaditana|type=mRNA|length=2228bp|location=Sequence derived from alignment at CM002461.1:368532..370759- (Nannochloropsis gaditana)
TTCCAGGAGGCAGGGTAAAGCATCTTTATTCACTCCATCAGAGACGGTGA
CGGAAAGCAAGAGCCCTGAGCCCGGCGACAAGAGAACCACCAGGAGTGCA
GAAGCAAGCATTTCTGCATCCCTGCATCTTCCTTTTTTCCTCAAGTAATT
TTCGACAATTTCTACAGCCATGGCACGGCTGCTGTTATTGTCTCTGCTCC
TTATTGCAAGCGCTCACGCGTTTCACTTCCATTCGTCCCTGTGCAAAACG
GGGGCGTCTCGGATGTCGTCTTTCAGAGCTCGCCAGCAGCGGGCTGAATC
TTCATCTCTGATGCTCGCCACTTCCCGAAGAAGCCATACGATGACAATGA
TGGCTGCCGGAAGCAAACCCAAAAAAATTGTTGTTCTAGGTACGTCGTTG
ATGTCTAAGTCGTAGGCGTGGATGGTTATGGATGGATGCGATGGCCTCGC
CAGGTCGCTTATTTGGATTGCGCGAATGGCGACCCGGGGCAAATCACCCC
AATTGCCACCATTCCCCCGTTACGGAGTGGGGTAACTGCATCATTTCAAG
AAGTGTGCGATATGGGAGGCGAACGGTGCCAAGCATTTCCCAAATATCCC
TTTGCGTGCCGTGCCGTGACGCGCTCAGGATCAAGCCCCCACGTCCTCAG
ATCCGAGCAGCGGGCACCTCACGCCTCTTTATAGCCCCCCAACATGACTC
AAACTTTTTGATGATAGAATTAAACTCGATGCGTCTCGCCCCTTTCGCTC
CCCCTACTTTGCAGGCGGCGATGGTTTCTGTGGGTGGCCCACCTCCCTGT
ACCTCTCCGAGAAAGGCCATGACGTTATCATCGTCGACAACCTCAGCCGA
CGGAACATCGACAACGAGCTTGGCTGCTCCTCCCTCACTCCCATTGAATC
TCCTGAGACTCGCGTTAAGGCATGGGAGAAGGTGAGCGGGCGCACCATGC
GCTTTGTGAATCTGGACGTGGCTAGGGACTATCAGGAACTTGTGCAACTG
TTCTTGGCCGAAAAACCTGACGCAGTCGTGCATTTTGCGGAGCAACGCGC
CGCGCCTTACTCTCAAAAAGGCGCGAAGCAGAAGCGGTACACGGTGGACA
ACAACGTCTCGGGCACGAACAACCTGCTGGTGGCGGTGGTGGAGAGCGGC
CTGGACATCCATGTCGTGCATCTGGGAACGATGGGCGTCTACGGCTATGG
CACCAGTGGGGGCGAGATTCCCGAGGGCTACATCGACGTGATCCTCCCGG
GGGGGCGCCCTTCCTCCATCCTCCATCCTGCCTACCCCGGCTCCGTCTAC
CACACGACCAAGTGTCTGGACGCCCTCCTCTTCCAGTTTTACAACAAGAA
CGACGGGATCCGCGTCACGGACCTGCACCAAGGCATCGTCTGGGGCACGA
ACACGCCGCAGACGATCAAGGACGAGCGACTCATCAACCGGTTCGACTAC
GACGGAGACTACGGCACTGTCCTGAACCGGTTTATCATGCAGGGGGCGCT
GGGGGTGCCTCTGACGGTCTATGGGACGGGGGGGCAGACGCGCGGCTTCA
TCCACATCACGGACACGGCCCGCTGTATCGAGATCGCCGTCTCCAACCCC
CCGCAGGCAGGGGAGAAGGTGCAGATTTTTAACCAGATCGCAGAGACGCT
CCGAGTGGGAGACCTGGCGAAACTGGTGGCGGAGAAGACGGGGGTGGACA
TCAACTACCTGAAGAATCCGAGGTTGGAGAGCGCGGAGAACGAGCTGGAG
GTGGCGAATCGGAAATTCCGAGGCTTGGGATTGGACCCGATCCTGCTGGA
TTCGAATTTGGGCCTCGTGGACGAGGTCAAGACGATTGCCGCCAAGTATG
CGGACAGGTGCGTGCGCGAGAAGATCCTCCCGGCCAGTTTTTGGAACCGA
AGGCGGGAGGCGGAGTGCGAGGCAAACACGCTGGAGGGCGGCAAGTAAGG
GTGGATGGGTAGGGAGGGACGGTGCAGGAGGCAGATTGGCAAGTAAAGGT
TGCGGTGAGGAAGGGAGAGGATGGGGGAAGCGAAGAGGGAAAGGGCGTGG
CCCCGGGCGGGGGGAACAGAAATGCCTCCGGCCGAGGGTCAAACTCGAGA
CAGAACAAGAGGCGCGCGGGATTTGACCTTGGCCTTTCTCGGTGCTGCTT
GAGCCTGCCACGGGGACGCATGGTCGACGTGCACAGCCAATTTGATTAAA
AAGAAACTCACGCGCCAACCCTATCTGT

Coding sequence (CDS) from alignment at CM002461.1:368532..370759-

>rna3416 ID=rna3416|Name=rna3416|organism=Nannochloropsis gaditana|type=CDS|length=2808bp|location=Sequence derived from alignment at CM002461.1:368532..370759- (Nannochloropsis gaditana)
GCGGCGATGGTTTCTGTGGGTGGCCCACCTCCCTGTACCTCTCCGAGAAA
GGCCATGACGTTATCATCGTCGACAACCTCAGCCGACGGAACATCGACAA
CGAGCTTGGCTGCTCCTCCCTCACTCCCATTGAATCTCCTGAGACTCGCG
TTAAGGCATGGGAGAAGGTGAGCGGGCGCACCATGCGCTTTGTGAATCTG
GACGTGGCTAGGGACTATCAGGAACTTGTGCAACTGTTCTTGGCCGAAAA
ACCTGACGCAGTCGTGCATTTTGCGGAGCAACGCGCCGCGCCTTACTCTC
AAAAAGGCGCGAAGCAGAAGCGGTACACGGTGGACAACAACGTCTCGGGC
ACGAACAACCTGCTGGTGGCGGTGGTGGAGAGCGGCCTGGACATCCATGT
CGTGCATCTGGGAACGATGGGCGTCTACGGCTATGGCACCAGTGGGGGCG
AGATTCCCGAGGGCTACATCGACGTGATCCTCCCGGGGGGGCGCCCTTCC
TCCATCCTCCATCCTGCCTACCCCGGCTCCGTCTACCACACGACCAAGTG
TCTGGACGCCCTCCTCTTCCAGTTTTACAACAAGAACGACGGGATCCGCG
TCACGGACCTGCACCAAGGCATCGTCTGGGGCACGAACACGCCGCAGACG
ATCAAGGACGAGCGACTCATCAACCGGTTCGACTACGACGGAGACTACGG
CACTGTCCTGAACCGGTTTATCATGCAGGGGGCGCTGGGGGTGCCTCTGA
CGGTCTATGGGACGGGGGGGCAGACGCGCGGCTTCATCCACATCACGGAC
ACGGCCCGCTGTATCGAGATCGCCGTCTCCAACCCCCCGCAGGCAGGGGA
GAAGGTGCAGATTTTTAACCAGATCGCAGAGACGCTCCGAGTGGGAGACC
TGGCGAAACTGGTGGCGGAGAAGACGGGGGTGGACATCAACTACCTGAAG
AATCCGAGGTTGGAGAGCGCGGAGAACGAGCTGGAGGTGGCGAATCGGAA
ATTCCGAGGCTTGGGATTGGACCCGATCCTGCTGGATTCGAATTTGGGCC
TCGTGGACGAGGTCAAGACGATTGCCGCCAAGTATGCGGACAGGTGCGTG
CGCGAGAAGATCCTCCCGGCCAGTTTTTGGAACCGAAGGCGGGAGGCGGA
GTGCGAGGCAAACACGCTGGAGGGCGGCAAGTAAATGGCACGGCTGCTGT
TATTGTCTCTGCTCCTTATTGCAAGCGCTCACGCGTTTCACTTCCATTCG
TCCCTGTGCAAAACGGGGGCGTCTCGGATGTCGTCTTTCAGAGCTCGCCA
GCAGCGGGCTGAATCTTCATCTCTGATGCTCGCCACTTCCCGAAGAAGCC
ATACGATGACAATGATGGCTGCCGGAAGCAAACCCAAAAAAATTGTTGTT
CTAGGCGGCGATGGTTTCTGTGGGTGGCCCACCTCCCTGTACCTCTCCGA
GAAAGGCCATGACGTTATCATCGTCGACAACCTCAGCCGACGGAACATCG
ACAACGAGCTTGGCTGCTCCTCCCTCACTCCCATTGAATCTCCTGAGACT
CGCGTTAAGGCATGGGAGAAGGTGAGCGGGCGCACCATGCGCTTTGTGAA
TCTGGACGTGGCTAGGGACTATCAGGAACTTGTGCAACTGTTCTTGGCCG
AAAAACCTGACGCAGTCGTGCATTTTGCGGAGCAACGCGCCGCGCCTTAC
TCTCAAAAAGGCGCGAAGCAGAAGCGGTACACGGTGGACAACAACGTCTC
GGGCACGAACAACCTGCTGGTGGCGGTGGTGGAGAGCGGCCTGGACATCC
ATGTCGTGCATCTGGGAACGATGGGCGTCTACGGCTATGGCACCAGTGGG
GGCGAGATTCCCGAGGGCTACATCGACGTGATCCTCCCGGGGGGGCGCCC
TTCCTCCATCCTCCATCCTGCCTACCCCGGCTCCGTCTACCACACGACCA
AGTGTCTGGACGCCCTCCTCTTCCAGTTTTACAACAAGAACGACGGGATC
CGCGTCACGGACCTGCACCAAGGCATCGTCTGGGGCACGAACACGCCGCA
GACGATCAAGGACGAGCGACTCATCAACCGGTTCGACTACGACGGAGACT
ACGGCACTGTCCTGAACCGGTTTATCATGCAGGGGGCGCTGGGGGTGCCT
CTGACGGTCTATGGGACGGGGGGGCAGACGCGCGGCTTCATCCACATCAC
GGACACGGCCCGCTGTATCGAGATCGCCGTCTCCAACCCCCCGCAGGCAG
GGGAGAAGGTGCAGATTTTTAACCAGATCGCAGAGACGCTCCGAGTGGGA
GACCTGGCGAAACTGGTGGCGGAGAAGACGGGGGTGGACATCAACTACCT
GAAGAATCCGAGGTTGGAGAGCGCGGAGAACGAGCTGGAGGTGGCGAATC
GGAAATTCCGAGGCTTGGGATTGGACCCGATCCTGCTGGATTCGAATTTG
GGCCTCGTGGACGAGGTCAAGACGATTGCCGCCAAGTATGCGGACAGGTG
CGTGCGCGAGAAGATCCTCCCGGCCAGTTTTTGGAACCGAAGGCGGGAGG
CGGAGTGCGAGGCAAACACGCTGGAGGGCGGCAAGTAAATGGCACGGCTG
CTGTTATTGTCTCTGCTCCTTATTGCAAGCGCTCACGCGTTTCACTTCCA
TTCGTCCCTGTGCAAAACGGGGGCGTCTCGGATGTCGTCTTTCAGAGCTC
GCCAGCAGCGGGCTGAATCTTCATCTCTGATGCTCGCCACTTCCCGAAGA
AGCCATACGATGACAATGATGGCTGCCGGAAGCAAACCCAAAAAAATTGT
TGTTCTAG

Synonyms

Publications