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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100080g17.2857.mrna |
| Orig protein id | gnl|cribi|Naga_100080g17.2857 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:312625..314674 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3398 ID=rna3398|Name=rna3398|organism=Nannochloropsis gaditana|type=mRNA|length=2213bp
ACCCCTTCCATCATCGACGAGCATTTTTATATTCCAATTGCCAAGCCTTC
ATTTGACCGCCCTCATCATATGACCGCATTATATTCAGGAATATGCGTTG
TTCGTGGGCTCTTGTTTTAGGCCTCATGGTCTTGGACGCGACGGCTTTTT
TTATCGGCACGGCGCCCAACTTTCAGTTTTCCACATGGCCGTCAACCTGG
AAGCAGGACGTGGGAAGCCACCCCTTGTCTGCAAAGGGTATCAAGACACG
CCTTAATCCCTTAAGAATGGGCCCTTTGAATGCGGCCAATCTGAAAAAGA
AGCAAAAAGGTGGCAAGAAAGCTAGCAAAGGCGGTGGCGGCAAAGGAAAA
GGCGGTGGAGGTGGTGGTGGCAACAGTGTGATAGACACCAATAAGCGCGA
GTACATTTATCAGATGCATCGAATGAGCAAAACATTTGGTAAAGGTGATG
GATCCAAGCCTGTGTTGAAAGATATATCCCTGTCTTTCTACCCGGGGGTC
AAAATTGGAGTGTTGGGCGGGAACGGCGCAGGGAAATCGACACTCATTAA
GATCATGGCTGGTGTGGACGACGATTTCAATGGAGAGGCACGGCCCGCTC
GCTGGGCAAAGCTAGGATACCTTCCCCAAGAACCGGAACTGGAAGGACCT
ACTGTGGGCGACGAGCTGGAAAAGGCAGTGGCAGAGACGAGAGGACTTTT
GAAGGAGTATGAGACTGTCAGCGCATCCCTGGGCAAGCCAGATCTGACGT
CGAATGAGCAGGAGACACTTAACTTAAGGATGGACGAGCTTCAAAGCGAG
ATCGAGGCGAACAATGGATGGGAATTGGACCGGATGTTGGAGAGAGCCAT
GGACGCGCTGCGGTGCCCGCCTCAAGAAGCCATAGTGGCCAATTTATCCG
GGGGGGAACGGCGCCGGGTAGCTTTATGCCGGCTGCTGCTGACCAGACCC
GACCTTCTCCTTCTGGACGAACCTACGAACCACCTGGACGCGGAATCAGT
GGCCTGGCTGGAGGATTTCCTGCACGACTACAAGGGCACCGTGGTGGCCA
TCACGCACGATCGGTACTTTCTGGACAATGTGGCCGGGTGGATCCTGGAG
CTGGACCGCGGGGAAGGGATTCCTTTCGAAGGGAACTACTCGGGCTGGCT
GGAACGGAAGGCGAAGAGGCTGGAGCAGGAGGCGAGGGAGGACAACAAGC
GCGCCAAGGCGCTGTCGAGGGAGTTGGAATGGATGCGCATGTCCCCCAAG
GCCCGCCAGACCAAGGCGAAAGCCCGCATTACCAGCTACGAGCAGATGGT
GCAGGCCGATGAGGAAGCACGGGAGAACTCCCGGTCGGGCCCTACCAACA
TCTACATCCCCCCGGGCCCGCCCCTGGCGGCCAAGGTGGTGGAGGCTGAG
AACCTGGGTAAGTGGTACGGGGACCGACTCTTGTGGGACAAGGTCTCTTT
CTCCTTGCCGCGGGGAGGGGTGGTGGGCGTGATCGGCGCGAACGGCGTGG
GGAAATCGACCCTTTTCAAGCTGATCGCGGGCTTGGAGGCGCCGGACCAA
GGCGCGTTGAGCCTGGGCGATACCGTGAAGGTCATGTACGTGGACCAGAA
CCGAGAGGCGGTGGCGGACCCGACCAAGACAGTGTACGACACGGTCGCGG
ATGGGGCGGAGCAGATCGAATTGGGGAAACGGGTGGTGAACAGTCGGGCG
TATTTGGGTTGGTTTAACTTCAAAGGAGCGGATCAACAGAAACCCGTCGG
TGTTTTGTCGGGGGGGGAGCGAAACCGTCTGTGTCTGGCGCAAACCTTGA
AGCAAGGAGGAAATCTCCTCCTCTTGGACGAGCCCACCAATGATTTGGAT
GTCGATACCTTGCGGGCCTTGGAGGACGCGATCGAAGCCTACGCAGGGTG
TGCCGTCATCATTTCCCATGACCGGTATTTCCTGGATCGGGTTGCCACCC
ACATCCTGGCCTTCGAGGATGACGGGAACGTGGTCTGGTTCGAGGGCGAT
TTTAGCGAGTATCAGAGAGATTTGCAGGCCAGAAACGGTGGCGTGGAGCC
CAAAAGGCCCAAATTTCGGCCCTTGCCTACCGTCTAGACGTGAATACGGG
GGCGAAGGGGAGGGGGAAATGGGGTTGACAAGAGAGGAGTGAAGAAACGA
GGTGGGGGTAGGGTGAGGTGGAATAAGTCAAAAAATTAGGAGGCTCAAGA
TATGAAGCAAATA back to topprotein sequence of rna3398 >rna3398-protein ID=rna3398-protein|Name=rna3398|organism=Nannochloropsis gaditana|type=polypeptide|length=512bp
MDDVDDAALSLKGVDILEVETAQFKDALVRQLHVLLNNETADPSLVEYIC
VMVLGNRRKMGEVRSAIEDLLGATMTAPLQQWLCEYVRDLCETHESLQHE
EERVHAELEIVGGKVMEQEEGRLRQEVGGKEREAGLEASDRREGAVGYVM
EEEREEEGRPGSGKQRVEGEVAVGTGSRGGNAGDMPGRALGAGRLFTSAL
HQSVWRRDSMVSEPLKLGGVVPHTRRDMAAIGRGRGSRGSPVERETKGRQ
VTEGKRRVQYHHQRPPASPRLGLPRDVRVVQEISLSGPATPAQAVLAPTR
PSSLFPPPRTTPLTTFTITLGGQKPTSRLSRGSSPRAGTGGDVKARAGGL
RAMTVSSKFVEHAKASKLGARIQGTTQLSPLAPPYQPGASRGEYGPIQGG
KGGRRGSTFRQVPYSLAGPSTSLPRPAPTRASLAWDKRGSGQFSIGPGSS
MSGPARLSAWEPPTAISASSPSNRSLIRNPATGRLTHHKVWVNPGLLGEA
HKAVEPSAGSQT back to topmRNA from alignment at CM002461.1:312625..314674- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3398 ID=rna3398|Name=rna3398|organism=Nannochloropsis gaditana|type=mRNA|length=2050bp|location=Sequence derived from alignment at CM002461.1:312625..314674- (Nannochloropsis gaditana)
CAGACGTGAGGCACGCATCTGTGTCTCAACTGGTCTGTGAGTATGTCCTT
TTGCCCGTCGGTCATCGACGTGGTGCTTATATGTGGGATGGTCTACCGCT
TTCATTGGTGCATCCGGGTGGTATTTCTTCTTCCACCGCCTCAGTCCACA
GACAGCAAGGCATTTCACGTGGCCAACCTAAGACGCCGCTCATCAATTAA
ACAGGAAAACGTACAATAATTGTCTCTTCCAGTCTCTGTCCTCAACCTTC
GACTGTAAGACGGTAGAAGCAGAAGGGGGCAAAACTGGGAGGATATGGAC
GATGTGGACGACGCGGCTTTGAGTTTAAAGGGCGTCGACATTCTTGAAGT
AGAGACGGCGCAATTCAAGGTATTTCTTGAATCTTTGGTGTGTATTTTCT
AATATGATATCATATGCTTTTCCTTGCTCGTCTCTTTCCCTGCTTCTCGA
AAGACGGGAGTCGTGCTAATGTTCAGCATGAACTAGGAATAGCAGGGCCG
CTTATCCTCGACTTATTTGCACTTTATTCACCTTTTAAATGCCAAGGATG
CACTTGTCCGCCAGCTTCACGTACTTTTGAACAACGAAACTGCCGATCCC
TCGCTTGTTGAGTATATATGTGTAATGGTTTTGGGGAACCGGAGGAAGAT
GGGGGAAGTACGTTCTGCTATCGAAGACTTGCTGGGTGCAACAATGACTG
CACCGCTTCAACAATGGCTGTGTGAATACGTGCGCGATCTCTGTGAGACT
CACGAGAGCCTGCAACACGAGGAAGAGCGAGTACATGCGGAGCTGGAAAT
AGTAGGAGGGAAGGTGATGGAGCAGGAGGAGGGGCGTTTGAGGCAAGAAG
TGGGGGGGAAAGAGCGGGAAGCGGGGCTTGAAGCGTCTGATAGACGGGAG
GGAGCAGTGGGATATGTGATGGAGGAAGAAAGGGAAGAGGAAGGAAGGCC
AGGTAGCGGGAAGCAACGCGTGGAGGGAGAAGTAGCCGTCGGGACTGGAA
GTAGGGGAGGAAACGCGGGTGACATGCCGGGGAGGGCTCTAGGGGCGGGA
CGTCTGTTCACGTCTGCCCTGCACCAGTCAGTTTGGAGAAGGGATTCCAT
GGTTTCTGAGCCGTTGAAGCTAGGGGGGGTCGTACCGCACACGAGGCGGG
ATATGGCAGCAATCGGTCGAGGAAGGGGAAGCAGGGGGAGTCCGGTGGAG
AGGGAAACTAAGGGGAGACAAGTCACGGAAGGCAAGCGGCGGGTCCAGTA
TCACCACCAACGCCCGCCCGCCTCTCCCCGGTTAGGGCTTCCTCGAGACG
TTCGGGTGGTGCAGGAGATTTCTCTTTCTGGCCCGGCAACCCCCGCTCAA
GCCGTCCTTGCACCGACTCGTCCGTCGTCCTTGTTTCCGCCCCCACGGAC
TACCCCGCTGACCACCTTCACAATCACCTTGGGTGGCCAGAAGCCTACGT
CTCGGCTCTCTCGAGGGTCATCCCCACGGGCAGGCACGGGTGGGGATGTG
AAAGCGCGTGCGGGGGGCTTGCGGGCCATGACCGTCTCCTCGAAATTTGT
GGAGCATGCAAAGGCGAGCAAGTTGGGCGCTAGAATCCAAGGAACCACTC
AACTCTCCCCTCTAGCCCCGCCGTACCAACCGGGTGCCAGTCGGGGGGAA
TATGGGCCTATACAAGGGGGGAAGGGGGGGCGGCGAGGGAGCACGTTCCG
ACAGGTTCCTTACTCCCTTGCCGGGCCAAGCACCTCGCTCCCTCGCCCTG
CTCCCACCAGAGCCTCTCTCGCATGGGACAAGCGGGGGTCTGGGCAGTTC
TCCATCGGACCAGGGAGCAGCATGTCGGGTCCTGCACGGTTATCAGCCTG
GGAGCCGCCCACTGCGATCTCTGCGTCTTCTCCCTCGAACCGCTCCTTGA
TTCGAAACCCTGCTACTGGTCGCCTCACCCACCACAAAGTGTGGGTGAAT
CCGGGGCTTTTGGGGGAGGCTCACAAGGCAGTGGAGCCATCTGCTGGCAG
TCAGACCTAGCAGGCAAGGAAAAATACGCCAAAGCGCGTGCGAGAAATTT
back to topCoding sequence (CDS) from alignment at CM002461.1:312625..314674- >rna3398 ID=rna3398|Name=rna3398|organism=Nannochloropsis gaditana|type=CDS|length=3078bp|location=Sequence derived from alignment at CM002461.1:312625..314674- (Nannochloropsis gaditana)
GATGCACTTGTCCGCCAGCTTCACGTACTTTTGAACAACGAAACTGCCGA
TCCCTCGCTTGTTGAGTATATATGTGTAATGGTTTTGGGGAACCGGAGGA
AGATGGGGGAAGTACGTTCTGCTATCGAAGACTTGCTGGGTGCAACAATG
ACTGCACCGCTTCAACAATGGCTGTGTGAATACGTGCGCGATCTCTGTGA
GACTCACGAGAGCCTGCAACACGAGGAAGAGCGAGTACATGCGGAGCTGG
AAATAGTAGGAGGGAAGGTGATGGAGCAGGAGGAGGGGCGTTTGAGGCAA
GAAGTGGGGGGGAAAGAGCGGGAAGCGGGGCTTGAAGCGTCTGATAGACG
GGAGGGAGCAGTGGGATATGTGATGGAGGAAGAAAGGGAAGAGGAAGGAA
GGCCAGGTAGCGGGAAGCAACGCGTGGAGGGAGAAGTAGCCGTCGGGACT
GGAAGTAGGGGAGGAAACGCGGGTGACATGCCGGGGAGGGCTCTAGGGGC
GGGACGTCTGTTCACGTCTGCCCTGCACCAGTCAGTTTGGAGAAGGGATT
CCATGGTTTCTGAGCCGTTGAAGCTAGGGGGGGTCGTACCGCACACGAGG
CGGGATATGGCAGCAATCGGTCGAGGAAGGGGAAGCAGGGGGAGTCCGGT
GGAGAGGGAAACTAAGGGGAGACAAGTCACGGAAGGCAAGCGGCGGGTCC
AGTATCACCACCAACGCCCGCCCGCCTCTCCCCGGTTAGGGCTTCCTCGA
GACGTTCGGGTGGTGCAGGAGATTTCTCTTTCTGGCCCGGCAACCCCCGC
TCAAGCCGTCCTTGCACCGACTCGTCCGTCGTCCTTGTTTCCGCCCCCAC
GGACTACCCCGCTGACCACCTTCACAATCACCTTGGGTGGCCAGAAGCCT
ACGTCTCGGCTCTCTCGAGGGTCATCCCCACGGGCAGGCACGGGTGGGGA
TGTGAAAGCGCGTGCGGGGGGCTTGCGGGCCATGACCGTCTCCTCGAAAT
TTGTGGAGCATGCAAAGGCGAGCAAGTTGGGCGCTAGAATCCAAGGAACC
ACTCAACTCTCCCCTCTAGCCCCGCCGTACCAACCGGGTGCCAGTCGGGG
GGAATATGGGCCTATACAAGGGGGGAAGGGGGGGCGGCGAGGGAGCACGT
TCCGACAGGTTCCTTACTCCCTTGCCGGGCCAAGCACCTCGCTCCCTCGC
CCTGCTCCCACCAGAGCCTCTCTCGCATGGGACAAGCGGGGGTCTGGGCA
GTTCTCCATCGGACCAGGGAGCAGCATGTCGGGTCCTGCACGGTTATCAG
CCTGGGAGCCGCCCACTGCGATCTCTGCGTCTTCTCCCTCGAACCGCTCC
TTGATTCGAAACCCTGCTACTGGTCGCCTCACCCACCACAAAGTGTGGGT
GAATCCGGGGCTTTTGGGGGAGGCTCACAAGGCAGTGGAGCCATCTGCTG
GCAGTCAGACCTAGATGGACGATGTGGACGACGCGGCTTTGAGTTTAAAG
GGCGTCGACATTCTTGAAGTAGAGACGGCGCAATTCAAGGATGCACTTGT
CCGCCAGCTTCACGTACTTTTGAACAACGAAACTGCCGATCCCTCGCTTG
TTGAGTATATATGTGTAATGGTTTTGGGGAACCGGAGGAAGATGGGGGAA
GTACGTTCTGCTATCGAAGACTTGCTGGGTGCAACAATGACTGCACCGCT
TCAACAATGGCTGTGTGAATACGTGCGCGATCTCTGTGAGACTCACGAGA
GCCTGCAACACGAGGAAGAGCGAGTACATGCGGAGCTGGAAATAGTAGGA
GGGAAGGTGATGGAGCAGGAGGAGGGGCGTTTGAGGCAAGAAGTGGGGGG
GAAAGAGCGGGAAGCGGGGCTTGAAGCGTCTGATAGACGGGAGGGAGCAG
TGGGATATGTGATGGAGGAAGAAAGGGAAGAGGAAGGAAGGCCAGGTAGC
GGGAAGCAACGCGTGGAGGGAGAAGTAGCCGTCGGGACTGGAAGTAGGGG
AGGAAACGCGGGTGACATGCCGGGGAGGGCTCTAGGGGCGGGACGTCTGT
TCACGTCTGCCCTGCACCAGTCAGTTTGGAGAAGGGATTCCATGGTTTCT
GAGCCGTTGAAGCTAGGGGGGGTCGTACCGCACACGAGGCGGGATATGGC
AGCAATCGGTCGAGGAAGGGGAAGCAGGGGGAGTCCGGTGGAGAGGGAAA
CTAAGGGGAGACAAGTCACGGAAGGCAAGCGGCGGGTCCAGTATCACCAC
CAACGCCCGCCCGCCTCTCCCCGGTTAGGGCTTCCTCGAGACGTTCGGGT
GGTGCAGGAGATTTCTCTTTCTGGCCCGGCAACCCCCGCTCAAGCCGTCC
TTGCACCGACTCGTCCGTCGTCCTTGTTTCCGCCCCCACGGACTACCCCG
CTGACCACCTTCACAATCACCTTGGGTGGCCAGAAGCCTACGTCTCGGCT
CTCTCGAGGGTCATCCCCACGGGCAGGCACGGGTGGGGATGTGAAAGCGC
GTGCGGGGGGCTTGCGGGCCATGACCGTCTCCTCGAAATTTGTGGAGCAT
GCAAAGGCGAGCAAGTTGGGCGCTAGAATCCAAGGAACCACTCAACTCTC
CCCTCTAGCCCCGCCGTACCAACCGGGTGCCAGTCGGGGGGAATATGGGC
CTATACAAGGGGGGAAGGGGGGGCGGCGAGGGAGCACGTTCCGACAGGTT
CCTTACTCCCTTGCCGGGCCAAGCACCTCGCTCCCTCGCCCTGCTCCCAC
CAGAGCCTCTCTCGCATGGGACAAGCGGGGGTCTGGGCAGTTCTCCATCG
GACCAGGGAGCAGCATGTCGGGTCCTGCACGGTTATCAGCCTGGGAGCCG
CCCACTGCGATCTCTGCGTCTTCTCCCTCGAACCGCTCCTTGATTCGAAA
CCCTGCTACTGGTCGCCTCACCCACCACAAAGTGTGGGTGAATCCGGGGC
TTTTGGGGGAGGCTCACAAGGCAGTGGAGCCATCTGCTGGCAGTCAGACC
TAGATGGACGATGTGGACGACGCGGCTTTGAGTTTAAAGGGCGTCGACAT
TCTTGAAGTAGAGACGGCGCAATTCAAG back to top
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