rna339, rna339 (mRNA) Nannochloropsis gaditana

Overview
Namerna339
Unique Namerna339
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length597
Alignment locationCM002455.1:836681..837001 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g158.1731.mrna
Orig protein idgnl|cribi|Naga_100003g158.1731
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:836681..837001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g158gene327Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna339rna339-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30214.1cds339Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna339 ID=rna339|Name=rna339|organism=Nannochloropsis gaditana|type=mRNA|length=597bp
ATGAAAGGTTTTTTGACGGGAGGTAAGATCACTGTTCTAACGACGAGAAG
CAACAACAGCAAAAAACAGGCCATTATGTTAGCAAAACTTGCAAAGGTGC
CGTGTCTCATGCTTTGTTATTTATTTTGGGCCGTCCGAGGAATCTGTTCA
GTTCACACATTGAAGAAGCCTGCCCAACAAAGCAGTCCACACATGGATAG
GCAAAAGTTTGAAGCTATGTTCCCTTCCCTTGTTGCGCATTATCCCAAAG
TTCGTGGGCGAGAACATTATAGTCCGCCTGAGAGGCGGACACCGAGGCCG
GCGACGCAGCACGTAGCCGACGGGGCGGACTTGACCGCACGCATCTCTTC
ACATGGTGTATTGTGGGCAGCCTTTGAAGACCTGTTGAGCATTTTTTTCG
GAACAGATGACGTAGCATGTGTCAAACGCACATTTGCTACAGTATACGAA
GAGCATCTCAATAGCTTGAATTTGGAGCAAATTGAGGAGGTCGCCAAGTG
CACGGTCGGCAATAGAGGAAGGACAACAAATTCGTGCCAACTCAGGGCAA
TCGCCGCTTGTAAAGATTGTAATTTCTGGCGCAAACGTTTAAATTAA
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protein sequence of rna339

>rna339-protein ID=rna339-protein|Name=rna339|organism=Nannochloropsis gaditana|type=polypeptide|length=79bp
MIVWRAMYFFRYSFTYSRKIILRKRCAHCTCTRRTPQSHILACWTFCRSD
SRRDIRYHRREPWAKYQQIAPNEEMELAL
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mRNA from alignment at CM002455.1:836681..837001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna339 ID=rna339|Name=rna339|organism=Nannochloropsis gaditana|type=mRNA|length=321bp|location=Sequence derived from alignment at CM002455.1:836681..837001- (Nannochloropsis gaditana)
ATGATAGTTTGGCGGGCTATGTACTTTTTCAGGTATTCATTCACTTATTC
TCGGAAAATCATTTTGAGAAAGAGGTGTGCACATTGCACGTGCACGAGGA
GGACACCTCAAGTAAGTTTCCCGAAGTGAATTTTCGGTGAGGTGATACTC
AGTAGAAAATTTTGGAGAGGTAGCCAGACTTCTTGTTTCTAGAGTCATAT
TTTAGCGTGTTGGACATTTTGTCGATCAGACTCAAGGCGAGACATCAGGT
ATCATCGACGTGAGCCTTGGGCGAAATACCAACAAATAGCGCCTAACGAG
GAAATGGAATTGGCCTTGTGA
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Coding sequence (CDS) from alignment at CM002455.1:836681..837001-

>rna339 ID=rna339|Name=rna339|organism=Nannochloropsis gaditana|type=CDS|length=480bp|location=Sequence derived from alignment at CM002455.1:836681..837001- (Nannochloropsis gaditana)
AGTCATATTTTAGCGTGTTGGACATTTTGTCGATCAGACTCAAGGCGAGA
CATCAGGTATCATCGACGTGAGCCTTGGGCGAAATACCAACAAATAGCGC
CTAACGAGGAAATGGAATTGGCCTTGTGAATGATAGTTTGGCGGGCTATG
TACTTTTTCAGGTATTCATTCACTTATTCTCGGAAAATCATTTTGAGAAA
GAGGTGTGCACATTGCACGTGCACGAGGAGGACACCTCAAAGTCATATTT
TAGCGTGTTGGACATTTTGTCGATCAGACTCAAGGCGAGACATCAGGTAT
CATCGACGTGAGCCTTGGGCGAAATACCAACAAATAGCGCCTAACGAGGA
AATGGAATTGGCCTTGTGAATGATAGTTTGGCGGGCTATGTACTTTTTCA
GGTATTCATTCACTTATTCTCGGAAAATCATTTTGAGAAAGAGGTGTGCA
CATTGCACGTGCACGAGGAGGACACCTCAA
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Synonyms
Publications