rna3381, rna3381 (mRNA) Nannochloropsis gaditana

Overview
Namerna3381
Unique Namerna3381
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length240
Alignment locationCM002461.1:267840..268660 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100824g3.7361.mrna
Orig protein idgnl|cribi|Naga_100824g3.7361
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:267840..268660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100824g3gene3256Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3381rna3381-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27300.1cds3372Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3381 ID=rna3381|Name=rna3381|organism=Nannochloropsis gaditana|type=mRNA|length=240bp
ATGGGCTCTTTTGGCCCTGGTCACAGTCCCTCTTCACGAGGGGCAAATAA
CGCGCTATCAGAGACCCTCCCTAAGCACGTCGGTCTCTTGGGCCCCCGGG
TGGTGGTGCAAAACACAGCATGGGTCTTCATGGAAGCTCCTCCCTTTCAA
GTACGCCCGCTTCGCTGCCAAGATATTTTTTTGGCCGACCATCCCCATTA
CCATCCTGAACCGGTGGACGAATTATTGGACCGCAATTGA
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protein sequence of rna3381

>rna3381-protein ID=rna3381-protein|Name=rna3381|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MEPMSSQGEVCVMGNDWVCGKALRGLIFLPCFLPPSRLPVPPSSCSRCEH
TAFKPTAERKEEGAKNFVQAELCERIPKNARAEGRRGKGGEHGDGGSRGG
GGGG
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mRNA from alignment at CM002461.1:267840..268660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3381 ID=rna3381|Name=rna3381|organism=Nannochloropsis gaditana|type=mRNA|length=821bp|location=Sequence derived from alignment at CM002461.1:267840..268660+ (Nannochloropsis gaditana)
TCCCTCTTCTCTggaccctccccttcccctctcttcaccctcctccctcc
ccctccccgccagtCACGGCATCgagcacctccacctccccaccGTGGAT
CATTTCGAACCCACACCGGAGGCTGTGGCCGCTGCCGTCGACTTCATCGC
GGAGCGCCACCGGCGGAAAGAGAAATGCTTCGTGCATTGCAAGGCGGGAC
ATGGCCGGTCCGCAGCGGTCGCGCTCTGTTGGCTAGCCACACAGCATCGG
GGTAGGCATTagcgggagcagggggggaaaggacggtTGGTCCTCGGAAG
TTCTTGGGGGGGGCTTTTCTTAATTTTTGGGTTTTTTGGAAGACACCTCA
ATTACGTTTGAATGGAGCCGATGTCCTCCCAGGGAGAAGTGTGTGTGATG
GGGAACGACTGGGTGTGTGGAAAGGCTTTACGAGGTTTaatcttcctccc
ttgcttcctccctccttcccgtcttcctgtcccaccttcctcatGCTCAA
GGTGTGAGCACACAGCTTTTAAACCAACGGCTgagcgaaaggaggaaggt
gcgaAAAACTTTGTACAGGCAGAATTGTGTGAAAGGATTCCTAAAAATGC
ACGGGCTGAAggtcggagggggaaagggggggagcatggagatggtggaa
gtagggggggaggaggaggagggtgacagcgaggtcgggggaggaaggga
aagagttGCGATGACGGCAAGGAAGAAACAGCAGATGGGAACCAACGGTT
ATGCTCAAGGGCGTCGAAGATGATGGTCGAtgtggaagggaaaaaaagaa
aagagtAACTTGTGTCTTCCC
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Coding sequence (CDS) from alignment at CM002461.1:267840..268660+

>rna3381 ID=rna3381|Name=rna3381|organism=Nannochloropsis gaditana|type=CDS|length=315bp|location=Sequence derived from alignment at CM002461.1:267840..268660+ (Nannochloropsis gaditana)
ATGGAGCCGATGTCCTCCCAGGGAGAAGTGTGTGTGATGGGGAACGACTG
GGTGTGTGGAAAGGCTTTACGAGGTTTaatcttcctcccttgcttcctcc
ctccttcccgtcttcctgtcccaccttcctcatGCTCAAGGTGTGAGCAC
ACAGCTTTTAAACCAACGGCTgagcgaaaggaggaaggtgcgaAAAACTT
TGTACAGGCAGAATTGTGTGAAAGGATTCCTAAAAATGCACGGGCTGAAg
gtcggagggggaaagggggggagcatggagatggtggaagtaggggggga
ggaggaggagggtga
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Synonyms
Publications