rna3379, rna3379 (mRNA) Nannochloropsis gaditana

Overview
Namerna3379
Unique Namerna3379
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1330
Alignment locationCM002461.1:265949..267046 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101737g1.9597.mrna
Orig protein idgnl|cribi|Naga_101737g1.9597
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:265949..267046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101737g1gene3254Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3379rna3379-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27302.1cds3370Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3379 ID=rna3379|Name=rna3379|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp
TCTCTCTCTCTCTCTCTCTCCCTGATTTCCTTCTTTCTGTCCGTACTTCT
CCCTCCTTGCACTCCTTCTCCCAAGCCGCCAATGGCACGAGAAGTTCTTC
ACTATTTTGTCTCACCCCCCTCCCTCCCTCTCTCCCGCCTACCCTCCCTC
CCTCCTTTAGACGATATCGCCCTTCTCCACCACGTCTCTCGCCGCGGTTG
TACTTTCTGGCCGGGGAAAACAGCCTTACCTCCCTCCCCTCCTCCCTCCC
TTCCTCCCTCACATACTCGTCCGTCCATTAAAAGGAAGCAGCGGCTCGTG
GCCGTCACTTACCCCCTCCCTCCCGCCCAACTTACCTCCCTCCCTCCCGC
CCTCCCGCCCACGTCCCCGATGCAACGGGTCGGCGAAGACGGTTGTTGCC
CTCAGCCCTTTTCAGGGGTTCCCGGGAGGGAGGGAGCGAGTGAGGGCGAG
GAGGAGGGAGGGAGGGAGGTGCAGCATGTTTGGTTCTATGGCTGGAAGGA
TTTCGCAGTCCCAGGGGAGGAAAATGACGACGTGGTCCTGTCGCTGGTCG
CCGAGGCGGTGCAGTACATTCGGTGAGGGGGAGGGCGGGAGGGAGGGAGG
GAGGGAAAGAGGGAGGAAAGGTAGCAAGGACAGCAAGTTGAGATGTCCGG
AGTCTCCGTTTCCTTCCAACCGTCGTGTCTTCCCGGCCCGGCCCTCCCTC
CCTCCCTCCCTCCTCCTCTCTCCCTTCCCCCCCCCATCGTCCGTTTCCTC
TTCCTCCTAGCGAGGGCCGGAAGGTAGTGGTGACGTGTCACAGCGGTCGC
GGCCGTTCTGGCACTTTTGCCGCCTTGGTAGCTGCTACCTTAAATGGCGT
CAGGGACGTGGATACGCTGGTGGATCTGATCGTGATGATGCGCGAGTCTC
GCGACGGCCTTGTGGAGCTGCCGGAGCAATTTGCCTACGTGTGTCGGCTT
CTGAAGATTCCCCTCCAGTCGACCTTCCCCCCGCTCTGGCGCCCTCTGGC
CCTGGTCTTAGCGACGGCCCGCGCGTCGGAGGGGGGGAGGGAGGAGGGGG
GGGAGGGGGGGAGGGAAGAACATAGGGTGGTGAGTGTGGTACTGAGTATT
CTCCTAGGGGGTCTCTTTCTCCTGTGCTTTTGGCGATATAGAAGACGGAC
ACGCCAGGCGCCCTGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGCTCG
ACGAGATAGTACAGATGGAAGAGGGTCGTTGCGAAGGGAGAGCGCAAGAA
ACAGGAAGGCACGGTGGATTTAGAACGGGGCAATTTTGAGGGGGAAATGT
AACGAAATGAAACTGAACGACCGACACGTA
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protein sequence of rna3379

>rna3379-protein ID=rna3379-protein|Name=rna3379|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MVRRAGVKHEACKNTAGARITSSPRFLLPFLLLSSCAAVRGAFPFLEGER
GSMDNRGESRRNRWRDVSLYQMSSEKPGTYVRRCPTPRGLLFPLSVDPSE
WPGCDDAYHVTWSLDVGDHLRGLSATNFAKLSRSMGYCPHRRCQLSDVGN
SARPSQCPEGLCYTKLEKGSPTYGACCFQEDGQRGSEGGR
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mRNA from alignment at CM002461.1:265949..267046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3379 ID=rna3379|Name=rna3379|organism=Nannochloropsis gaditana|type=mRNA|length=1098bp|location=Sequence derived from alignment at CM002461.1:265949..267046- (Nannochloropsis gaditana)
TGACCAGGGAGGTCATGAGTCCTATGCATCAATGCTCGTAAGATGCAGAA
AAAAATACACGCAGGCAAAACAAGACGTGCATATCAGGAATGTCATGGCA
CCGGACACAATTGCAAGGAGTTTGAATAAAGTCATGCTTCCCCTTAAAGT
CCTCTTCAAGTCTTCGATATGAGTAGGCGAGGTGCCACCTGGGAGGTGCA
ACCCGCAATCATGCTTTTCAGCACGCCTTGTTCCTGCGCGATGCCTCAAG
GTCCTGAAGTAAGCTGTTTTTGAGAAACATTTTTAACTCTTCTCGGCCTC
CACGTCCAGGGATGGTCAGGAGGGCCGGCGTCAAACATGAAGCATGTAAG
AATACAGCCGGGGCCCGCATTACCTCCTCCCCACGTTTCCTGCTCCCATT
CCTCCTTTTGTCCTCATGTGCCGCCGTGAGAGGCGCTTTTCCCTTCCTGG
AGGGAGAACGAGGTAGCATGGACAACCGTGGAGAGAGCAGAAGAAACCGA
TGGAGGGATGTCTCACTGTATCAAATGTCCTCTGAGAAGCCCGGGACGTA
CGTTCGGTAGGTCAAGGACCCGGCCTTCTCGAGCCCGATGCGAATTTCTT
CCAACGCCATCACCATAAACTGCCTTTCTTAAACGACACCCACAATGTTG
TCTAGACGGTGCCCGACGCCTCGTGGACTTCTTTTCCCGCTCTCTGTAGA
CCCCTCCGAGTGGCCGGGCTGCGACGACGCCTACCACGTGACCTGGTCGC
TGGATGTGGGAGATCATTTGAGGGGGCTCTCCGGTACGCACAGACGAAGC
ACACAGGAATAAGGCAAAGACAGTTTGATACCATGCTTGCCCCCGCGTTG
TTTTTCCCTCCTTCCTTACCTTCCTCTTTTCTCCCTCCCTCCCCATCAGC
CACCAACTTCGCCAAGCTCTCTCGCTCCATGGGCTACTGCCCTCACCGAC
GGTGCCAGTTGTCCGACGTGGGGAACAGTGCCCGACCAAGCCAGTGTCCG
GAGGGGCTCTGCTACACGAAACTGGAGAAAGGATCCCCTACCTACGGTGC
TTGTTGCTTTCAGGAGGACGGTCAGAGAGGGAGCGAGGGAGGGAGAGA
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Coding sequence (CDS) from alignment at CM002461.1:265949..267046-

>rna3379 ID=rna3379|Name=rna3379|organism=Nannochloropsis gaditana|type=CDS|length=1716bp|location=Sequence derived from alignment at CM002461.1:265949..267046- (Nannochloropsis gaditana)
CCACCAACTTCGCCAAGCTCTCTCGCTCCATGGGCTACTGCCCTCACCGA
CGGTGCCAGTTGTCCGACGTGGGGAACAGTGCCCGACCAAGCCAGTGTCC
GGAGGGGCTCTGCTACACGAAACTGGAGAAAGGATCCCCTACCTACGGTG
CTTGTTGCTTTCAGGAGGACGGTCAGAGAGGGAGCGAGGGAGGGAGAGAA
CGGTGCCCGACGCCTCGTGGACTTCTTTTCCCGCTCTCTGTAGACCCCTC
CGAGTGGCCGGGCTGCGACGACGCCTACCACGTGACCTGGTCGCTGGATG
TGGGAGATCATTTGAGGGGGCTCTCCGATGGTCAGGAGGGCCGGCGTCAA
ACATGAAGCATGTAAGAATACAGCCGGGGCCCGCATTACCTCCTCCCCAC
GTTTCCTGCTCCCATTCCTCCTTTTGTCCTCATGTGCCGCCGTGAGAGGC
GCTTTTCCCTTCCTGGAGGGAGAACGAGGTAGCATGGACAACCGTGGAGA
GAGCAGAAGAAACCGATGGAGGGATGTCTCACTGTATCAAATGTCCTCTG
AGAAGCCCGGGACGTACGTTCGCCACCAACTTCGCCAAGCTCTCTCGCTC
CATGGGCTACTGCCCTCACCGACGGTGCCAGTTGTCCGACGTGGGGAACA
GTGCCCGACCAAGCCAGTGTCCGGAGGGGCTCTGCTACACGAAACTGGAG
AAAGGATCCCCTACCTACGGTGCTTGTTGCTTTCAGGAGGACGGTCAGAG
AGGGAGCGAGGGAGGGAGAGAACGGTGCCCGACGCCTCGTGGACTTCTTT
TCCCGCTCTCTGTAGACCCCTCCGAGTGGCCGGGCTGCGACGACGCCTAC
CACGTGACCTGGTCGCTGGATGTGGGAGATCATTTGAGGGGGCTCTCCGA
TGGTCAGGAGGGCCGGCGTCAAACATGAAGCATGTAAGAATACAGCCGGG
GCCCGCATTACCTCCTCCCCACGTTTCCTGCTCCCATTCCTCCTTTTGTC
CTCATGTGCCGCCGTGAGAGGCGCTTTTCCCTTCCTGGAGGGAGAACGAG
GTAGCATGGACAACCGTGGAGAGAGCAGAAGAAACCGATGGAGGGATGTC
TCACTGTATCAAATGTCCTCTGAGAAGCCCGGGACGTACGTTCGCCACCA
ACTTCGCCAAGCTCTCTCGCTCCATGGGCTACTGCCCTCACCGACGGTGC
CAGTTGTCCGACGTGGGGAACAGTGCCCGACCAAGCCAGTGTCCGGAGGG
GCTCTGCTACACGAAACTGGAGAAAGGATCCCCTACCTACGGTGCTTGTT
GCTTTCAGGAGGACGGTCAGAGAGGGAGCGAGGGAGGGAGAGAACGGTGC
CCGACGCCTCGTGGACTTCTTTTCCCGCTCTCTGTAGACCCCTCCGAGTG
GCCGGGCTGCGACGACGCCTACCACGTGACCTGGTCGCTGGATGTGGGAG
ATCATTTGAGGGGGCTCTCCGATGGTCAGGAGGGCCGGCGTCAAACATGA
AGCATGTAAGAATACAGCCGGGGCCCGCATTACCTCCTCCCCACGTTTCC
TGCTCCCATTCCTCCTTTTGTCCTCATGTGCCGCCGTGAGAGGCGCTTTT
CCCTTCCTGGAGGGAGAACGAGGTAGCATGGACAACCGTGGAGAGAGCAG
AAGAAACCGATGGAGGGATGTCTCACTGTATCAAATGTCCTCTGAGAAGC
CCGGGACGTACGTTCG
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Synonyms
Publications