rna3378, rna3378 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3378
Unique Name	rna3378
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	559
Alignment location	CM002461.1:264299..265846 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101540g1.5547.mrna
Orig protein id	gnl\|cribi\|Naga_101540g1.5547
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:264299..265846 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101540g1	gene3253	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27304.1	cds3369	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3378	rna3378-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:264299..265846-
coding sequence from alignment at CM002461.1:264299..265846-

mRNA sequence

>rna3378 ID=rna3378|Name=rna3378|organism=Nannochloropsis gaditana|type=mRNA|length=559bp
GTAAGGTAGCTTGACGCCTGCAAAGCTGTATGACTCGGTCTAAGGAATCT
CCACGCGCTAATTCCCACCTTCCCTCCCTCCCTCCTCCCCCCCCCCCCTC
AGACGGGGCCGTTTTGAACAGCAACAACCTGTGGGTGAACGTGTTGGACC
CCACGGGGGCGATCGAGCGACAGGACTGGAAGGACAACTACGAGAAGATA
CGGAAGGCCCTGGGGGCCGACGATCCCGGGTATGTGATCCACGAGGCCGC
CTGTTGGTCCCCCCTGCGGAGGGAATGGATTTTCCTGCCCCGGCGCGTCT
CCTCCCTTCCTTACGACGAGGAGTTAGACGAAAAGATGGGCAGCAACAAA
CTCGTCATTGCCGATGAGTCCTTCAGTAAGGTACGTGGGGGTGAGAACGG
CACGGGCTCGGTCGCGCTTGCCCCCTGGCATTACTCTCCCTCCGCCACCC
CTTCCGTTTTCTCCCTCTCCTGTTTCGTCTCTTTCCACTGTGTCCTATCC
ATTTCCCTTCGCTACCGGTAGAAGGAGACCTCATCCCTTCCTTCCACTAG
TCATCCTCT

protein sequence of rna3378

>rna3378-protein ID=rna3378-protein|Name=rna3378|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
SLSLSLSLISFFLSVLLPPCTPSPKPPMAREVLHYFVSPPSLPLSRLPSL
PPLDDIALLHHVSRRGCTFWPGKTALPPSPPPSLPPSHTRPSIKRKQRLV
AVTYPLPPAQLTSLPPALPPTSPMQRVGEDGCCPQPFSGVPGREGASEGE
EEGGREVQHVWFYGWKDFAVPGEENDDVVLSLVAEAVQYIR

mRNA from alignment at CM002461.1:264299..265846-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3378 ID=rna3378|Name=rna3378|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp|location=Sequence derived from alignment at CM002461.1:264299..265846- (Nannochloropsis gaditana)
TCTCTCTCTCTCTCTCTCTCCCTGATTTCCTTCTTTCTGTCCGTACTTCT
CCCTCCTTGCACTCCTTCTCCCAAGCCGCCAATGGCACGAGAAGTTCTTC
ACTATTTTGTCTCACCCCCCTCCCTCCCTCTCTCCCGCCTACCCTCCCTC
CCTCCTTTAGACGATATCGCCCTTCTCCACCACGTCTCTCGCCGCGGTTG
TACTTTCTGGCCGGGGAAAACAGCCTTACCTCCCTCCCCTCCTCCCTCCC
TTCCTCCCTCACATACTCGTCCGTCCATTAAAAGGAAGCAGCGGCTCGTG
GCCGTCACTTACCCCCTCCCTCCCGCCCAACTTACCTCCCTCCCTCCCGC
CCTCCCGCCCACGTCCCCGATGCAACGGGTCGGCGAAGACGGTTGTTGCC
CTCAGCCCTTTTCAGGGGTTCCCGGGAGGGAGGGAGCGAGTGAGGGCGAG
GAGGAGGGAGGGAGGGAGGTGCAGCATGTTTGGTTCTATGGCTGGAAGGA
TTTCGCAGTCCCAGGGGAGGAAAATGACGACGTGGTCCTGTCGCTGGTCG
CCGAGGCGGTGCAGTACATTCGGTGAGGGGGAGGGCGGGAGGGAGGGAGG
GAGGGAAAGAGGGAGGAAAGGTAGCAAGGACAGCAAGTTGAGATGTCCGG
AGTCTCCGTTTCCTTCCAACCGTCGTGTCTTCCCGGCCCGGCCCTCCCTC
CCTCCCTCCCTCCTCCTCTCTCCCTTCCCCCCCCCATCGTCCGTTTCCTC
TTCCTCCTAGCGAGGGCCGGAAGGTAGTGGTGACGTGTCACAGCGGTCGC
GGCCGTTCTGGCACTTTTGCCGCCTTGGTAGCTGCTACCTTAAATGGCGT
CAGGGACGTGGATACGCTGGTGGATCTGATCGTGATGATGCGGTGAGGGA
GGGAAATGGGAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAAGGGACATGGCCCTGGCCAGACCGGTGTGGAGAGAGGCCGGAGGCG
GGAGGAAAGGGAGCAGGAGGGCTCGAGGACAAGGAGGAGAGGAGAAAGCC
CTCACACTCTTTTTTCGCGCCATTTTACCCCCCCTGCCTTTTCCCCCCTT
TCGTTCGCAGCGAGTCTCGCGACGGCCTTGTGGAGCTGCCGGAGCAATTT
GCCTACGTGTGTCGGCTTCTGAAGATTCCCCTCCAGTCGACCTTCCCCCC
GCTCTGGCGCCCTCTGGCCCTGGTCTTAGCGACGGCCCGCGCGTCGGAGG
GGGGGAGGGAGGAGGGGGGGGAGGGGGGGAGGGAAGAACATAGGGTGGTG
AGTGTGGTACTGAGTATTCTCCTAGGGGGTCTCTTTCTCCTGTGCTTTTG
GCGATATAGAAGACGGACACGCCAGGCGCCCTGAGGGAGGGAGGGAAGGA
GGGAGGGAGGGAGGCTCGACGAGATAGTACAGATGGAAGAGGGTCGTTGC
GAAGGGAGAGCGCAAGAAACAGGAAGGCACGGTGGATTTAGAACGGGGCA
ATTTTGAGGGGGAAATGTAACGAAATGAAACTGAACGACCGACACGTA

Coding sequence (CDS) from alignment at CM002461.1:264299..265846-

>rna3378 ID=rna3378|Name=rna3378|organism=Nannochloropsis gaditana|type=CDS|length=576bp|location=Sequence derived from alignment at CM002461.1:264299..265846- (Nannochloropsis gaditana)
TCTCTCTCTCTCTCTCTCTCCCTGATTTCCTTCTTTCTGTCCGTACTTCT
CCCTCCTTGCACTCCTTCTCCCAAGCCGCCAATGGCACGAGAAGTTCTTC
ACTATTTTGTCTCACCCCCCTCCCTCCCTCTCTCCCGCCTACCCTCCCTC
CCTCCTTTAGACGATATCGCCCTTCTCCACCACGTCTCTCGCCGCGGTTG
TACTTTCTGGCCGGGGAAAACAGCCTTACCTCCCTCCCCTCCTCCCTCCC
TTCCTCCCTCACATACTCGTCCGTCCATTAAAAGGAAGCAGCGGCTCGTG
GCCGTCACTTACCCCCTCCCTCCCGCCCAACTTACCTCCCTCCCTCCCGC
CCTCCCGCCCACGTCCCCGATGCAACGGGTCGGCGAAGACGGTTGTTGCC
CTCAGCCCTTTTCAGGGGTTCCCGGGAGGGAGGGAGCGAGTGAGGGCGAG
GAGGAGGGAGGGAGGGAGGTGCAGCATGTTTGGTTCTATGGCTGGAAGGA
TTTCGCAGTCCCAGGGGAGGAAAATGACGACGTGGTCCTGTCGCTGGTCG
CCGAGGCGGTGCAGTACATTCGGTGA

Synonyms

Publications