rna3377, rna3377 (mRNA) Nannochloropsis gaditana

Overview
Namerna3377
Unique Namerna3377
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1396
Alignment locationCM002461.1:262732..263399 +

Link to JBrowse

Properties
Property NameValue
Productapyrase family protein
Orig transcript idgnl|cribi|Naga_102661g1.9507.mrna
Orig protein idgnl|cribi|Naga_102661g1.9507
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:262732..263399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102661g1gene3252Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3377rna3377-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27305.1cds3368Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3377 ID=rna3377|Name=rna3377|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp
ACAGCGCAGCCCATGCCTCTACTCGAAAGAAAGTGAACAAAAAAAGTGGG
AAAAAAACCCTTCTGCAGCATATTTATTCCCCCGTCCCCGACATCAACGA
GCGTCATCGCAACTCCTTGGCCGCCCCCCCGAGGAATGGACACTCAACCA
CCTCCGACAACCACTTCGATCGTCCCTGGAGCGACCTTGATCGTGGAAGA
TGCCTGTGACTTTTTCGACCTCTCCGATTTCCTGTTTCGTGCCCGTCTGG
CCCCTGGGAAGTTGGCGCTGGCCGTGACAGGGACGAAGGAGGAAGGGCAG
GTTGGCGTTTTGACTTCACGGGGACGGCCTATCCTGGAACTCCTCGATAC
GCGGGCCATGGGGTCCCGGCTAGGGCTCAAGCCTTGGAGTGCGTCTCGCC
AGGCATCGGGGCGAGAAGGCGGCAATGGACGAGGGGCGTCTCTATCCGTG
GAGACCCTCATGGATGCAGTCGGGAAGACCCACAATCTGGTGTCGGTCTC
GTTGGCCGTGGACGATCCCTCTGAAACAGCCCAGCAATGCCTTGCTGCGG
GGGCCACAGCCATGGAGGTGGAAGATGGCGGGGTAGAAAAGGGCGAAGTG
GTGCTGGTGCCATGGGGGGGCGGCCGAGGAGGAGGGACGGAGTACCATGA
GGAAGGAAGGGAAGGAAGGGAAGACAGAAGACGTGGGGATGGCGGCGAGG
AGGGTACGCCAAAGGGCGGCTTAATCCTCTTCCTGAGGCTCGGCGAGGCG
CATGTCGGTGGCCAGGACAGTGGCGGGAGGAGGGAACGGGCAGAGACCGG
TGGGGAGGTCGTGCGGCAAGACGTGAGGAGGAAGGAAGGGGAGGGAGGGG
AGGTGCAAGGCGGCCCGCAAGGTGTTCGAGAAGCGACTGAGGCGTGGGTA
ACCGAGGCGAAGGGCCGGGAAAGAGGAGGAAGGGAGGGAGGGGAGGGAGG
GGCAGAGGGGGGGGGGCGGGAAGGAGGAGGAAGGGAGGGAGGGGAGGGAG
GGGAGGAAGGAACTGAGTTCCCCACCTTGAGCATCGAACTCCTCGAAAGA
GGAGGAAGGGATGGAGGGGAGGGAGGGGCGAGAGGGGGGGTACGGGGCGA
AAAAAGGCCGACGACCGCGGCCGACAGCACACGAAGCGAGGAGGAAGAGG
AAGAGGAGGAAGGAACTGAGTTCCCCACCTTAAGCATCGAACTCCTCCGT
TGCTCCCGGCCCCGGGGCCTCCGCGCCAATACCCGCCACCCGCTCCCTAT
CGAGACCGGCACCTTCCGGGGGGCTTTCCTCCTGCTCCTGCGCGATGACG
ACGCGGATCCGCCCGAACCGCGCCACCACCGCCACATGTTCCACGGCAAG
CAACGTCGGTTTTGCATTCAAGTCCAAGGTCGATTTAAGGTAGGAG
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protein sequence of rna3377

>rna3377-protein ID=rna3377-protein|Name=rna3377|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MTRSKESPRANSHLPSLPPPPPPSDGAVLNSNNLWVNVLDPTGAIERQDW
KDNYEKIRKALGADDPGYVIHEAACWSPLRREWIFLPRRVSSLPYDEELD
EKMGSNKLVIADESFSKVRGGENGTGSVALAPWHYSPSATPSVFSLSCFV
SFHCVLSISLRYR
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mRNA from alignment at CM002461.1:262732..263399+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3377 ID=rna3377|Name=rna3377|organism=Nannochloropsis gaditana|type=mRNA|length=668bp|location=Sequence derived from alignment at CM002461.1:262732..263399+ (Nannochloropsis gaditana)
GTAAGGTAGCTTGACGCCTGCAAAGCTGTATGACTCGGTCTAAGGAATCT
CCACGCGCTaattcccaccttccctccctccctcctcccccccccccctc
agaCGGGGCCGTTTTGAACAGCAACAACCTGTGGGTGAACGTGTTGGACC
CCACGGGGGCGATCGAGCGACAGGACTGGAAGGACAACTACGAGAAGATA
CGGAAGGCCCTGGGGGCCGACGATCCCGTgcgtctccccgccctccctcc
cgccctccttcctgtctgcCTTCCCTGACCTTCTCGCCCCctgctctctt
ttcctccctccctccttccctccctccctccctcaggggTATGTGATCCA
CGAGGCCGCCTGTTGGTCCCCCCTGCGGAGGGAATGGATTTTCCTGCCCC
GgcgcgtctcctcccttccttacGACGAGGAGTTAGACGAAAAGATGGGC
AGCAACAAACTCGTCATTGCCGATGAGTCCTTCAGTAAGGTACGTGGGGG
TGAGAACGGCACGGGCTCGGTCGCGCTTGCCCCCTGGCATtactctccct
ccgccaccccttccgttttctccctctcctgtttCGTCTCTTTCCACTGT
GTCCTATCCATTTCCCTTCGCTACCGGTAGAAGGAGacctcatcccttcc
ttccactagtcatcctct
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Coding sequence (CDS) from alignment at CM002461.1:262732..263399+

>rna3377 ID=rna3377|Name=rna3377|organism=Nannochloropsis gaditana|type=CDS|length=984bp|location=Sequence derived from alignment at CM002461.1:262732..263399+ (Nannochloropsis gaditana)
ATGACTCGGTCTAAGGAATCTCCACGCGCTaattcccaccttccctccct
ccctcctcccccccccccctcagaCGGGGCCGTTTTGAACAGCAACAACC
TGTGGGTGAACGTGTTGGACCCCACGGGGGCGATCGAGCGACAGGACTGG
AAGGACAACTACGAGAAGATACGGAAGGCCCTGGGGGCCGACGATCCCgg
gTATGTGATCCACGAGGCCGCCTGTTGGTCCCCCCTGCGGAGGGAATGGA
TTTTCCTGCCCCGgcgcgtctcctcccttccttacGACGAGGAGTTAGAC
GAAAAGATGGGCAGCAACAAACTCGTCATTGCCGATGAGTCCTTCAGTAA
GGTACGTGGGGGTGAGAACGGCACGGGCTCGGTCGCGCTTGCCCCCTGGC
ATtactctccctccgccaccccttccgttttctccctctcctgtttCGTC
TCTTTCCACTGTGTCCTATCCATTTCCCTTCGCTACCGGTAGATGACTCG
GTCTAAGGAATCTCCACGCGCTaattcccaccttccctccctccctcctc
ccccccccccctcagaCGGGGCCGTTTTGAACAGCAACAACCTGTGGGTG
AACGTGTTGGACCCCACGGGGGCGATCGAGCGACAGGACTGGAAGGACAA
CTACGAGAAGATACGGAAGGCCCTGGGGGCCGACGATCCCgggTATGTGA
TCCACGAGGCCGCCTGTTGGTCCCCCCTGCGGAGGGAATGGATTTTCCTG
CCCCGgcgcgtctcctcccttccttacGACGAGGAGTTAGACGAAAAGAT
GGGCAGCAACAAACTCGTCATTGCCGATGAGTCCTTCAGTAAGGTACGTG
GGGGTGAGAACGGCACGGGCTCGGTCGCGCTTGCCCCCTGGCATtactct
ccctccgccaccccttccgttttctccctctcctgtttCGTCTCTTTCCA
CTGTGTCCTATCCATTTCCCTTCGCTACCGGTAG
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Synonyms
Publications