rna3373, rna3373 (mRNA) Nannochloropsis gaditana

Overview
Namerna3373
Unique Namerna3373
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length633
Alignment locationCM002461.1:252224..253466 +

Link to JBrowse

Properties
Property NameValue
ProductCleavage/polyadenylation specificity factor subunit A
Orig transcript idgnl|cribi|Naga_101715g1.4300.mrna
Orig protein idgnl|cribi|Naga_101715g1.4300
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:252224..253466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101715g1gene3248Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3373rna3373-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27308.1cds3364Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3373 ID=rna3373|Name=rna3373|organism=Nannochloropsis gaditana|type=mRNA|length=633bp
ATGAATCTAGTGGCTTACACACTCAAGCCTCCAACGGGCGTGAGTCGGGC
GCTGGTGGGCTGCTTCTTGGAAGGGGAGGAAGGGGAAGAGGAAGAGGAAC
TCTTGGCCTTGGTCCGTGGAGTTGGTACCGTGGAAATCGTCCAGGTATTG
ACCCCTCCCCCTCCCTCCCCTGGCACCAACGGGAAGGAAGGAGCGCAAGA
GGCGAAGGAATGGGAAGGAAACGGGGCAATTCTCCACACCCTCTGCTCCC
AGCCCACCTTCTCCGCCATCCGGGCATGGGCATGCCTGCGGCCTGTAGGC
GGCACCAAGGACCTGTTGGCCGTGACCTCGGACGCAGGCATGCTCGCTTT
GGTGGAACTGGTCGCCCGCCCTGCGAACACAGCCTCCCATGCAGTCGCTT
ACCACCTGCAACGCATCGCCTCCTTGTCACTGGGTACATCCGGGTGTCCT
CGGAGCGTGCCCGGGCAATACGTCGCCGCCGACCCGAGTGGGCGGGCCGT
AATGGTCAGCTCCATTGACGGGCATCTTACGTGCGCCGTGGTGCTGCGAA
ACGCGGCCACGGGGGCAATTGAGCTTCGACGGAGCCGTGTGGGCGGGGAT
CTGGGGAAACCTGCGGACCCTTTCTGGTCCTGA
back to top

protein sequence of rna3373

>rna3373-protein ID=rna3373-protein|Name=rna3373|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
AAFAEEGRLLVGFGYPSPSSPPPSFPASPCVRLYDLGKRRLLKRADSGCL
SGKGGREGGRPGGGITRLLHQGSWIYAVDCLTGVHALYYLPGENTFTLVA
DMEASPRLVTDALLLDTRTVAGADRQGNIFVARTPWEAVMSVEGVGLGNE
QKGGREEGIGPTGGRAFWEVCGEGGEAPSRLESLVEYHVGETVSAMVPAR
LGRKGEGARMGLLYATIEGTLGILSPLYSPREKEVLLKVEGALLKLCAGG
EGKEEVDRGLFVTARDLVTFRSAIRPAKGVIDLDVIVAAGAERRAWAAKK
AKLSAEEVEEVLNETLAGMTLMRG
back to top

mRNA from alignment at CM002461.1:252224..253466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3373 ID=rna3373|Name=rna3373|organism=Nannochloropsis gaditana|type=mRNA|length=1243bp|location=Sequence derived from alignment at CM002461.1:252224..253466+ (Nannochloropsis gaditana)
GCGGCcttcgcggaggaggggcggctgCTGGTCGGCTTCGGTTACcccag
cccgtcctcccccccgccctccttccctgcttccccttgcgTGCGCCTCT
ACGACCTGGGGAAGCGCCGATTGTTGAAGCGGGCCGACTCGGGATGTCtg
agcgggaagggagggcgggaaggcgggcgccCGGGGGGAGGTATCACCCG
GCTGCTGCACCAAGGATCCTGGATCTATGCGGTGGATTGCCTCACTGGGG
TGCACGCCTTGTACTACCTTCCCGGGGAGAATACCTTCACCCTGGTCGCG
GACATGgaggcctccccccggtTGGTCACGGACGCGTTGCTGCTTGATAC
CCGGACGGTCGCCGGTGCCGACCGGCAGGGGAACATTTTTGTGGCGCGAA
CGCCCTGGGAAGCAGTGATGAgtgtggaaggggtggggttGGGGAATGAG
cagaagggtgggagggaggaggggattgGTCCTACGGGTGGGAGAGCCTT
TTGGGAGGtgtgtggggaggggggggaggcgccttCGAGATTGGAGAGTC
TGGTCGAGTACCATGTGGGGGAAACGGTTTCGGCGATGGTCCCGGCCCGC
CTcggacggaagggggagggggctcGGATGGGCTTGCTGTACGCGACGAT
TGAAGGCACCTTAGGAATCTTGTCCCCCCTGTACTCTCCCCGCGAGAAAG
AGGTCTTGCTCAAAGTGGAGGGCGCACTCCTGAAACTCtgtgcggggggg
gagggaaaggaggaagtggatcGGGGTTTGTTTGTAACGGCTCGGGATTT
GGTCACCTTCCGATCGGCCATACGACCGGCGAAAGGGGTGATTGATTTGG
ACGTGATAGTGGCAGCGGGCGCGGAGCGACGGGCGTGGGCGGCGAAAAAG
GCGAAATTGAGCGCAGAAGAGGTAGAAGAGGTATTGAACGAGACCCTTGC
AGGGATGACGTTGATGAGGGGCtaacgaggagggaggggaggacgggaag
gaaggaaggagggcgaaggagggcaaagtaACGGGGGATGTATTGGCTGC
GAGTGCCAAGAAAGCTAAAAAAAAATTGTTAGGATTATCTCGAATAGTGT
CAGAACCTTCCGGTAGGTCAACGGATTTTCTAAATTTTGAATCGGGGGGG
ATTTCCCCCCTACCTTGTTAGCAAGagacctccctcttgcttcccAAAGC
AAATTTTCTGCTCGCGTatcttccttctcacgaTACATTTACC
back to top

Coding sequence (CDS) from alignment at CM002461.1:252224..253466+

>rna3373 ID=rna3373|Name=rna3373|organism=Nannochloropsis gaditana|type=CDS|length=975bp|location=Sequence derived from alignment at CM002461.1:252224..253466+ (Nannochloropsis gaditana)
GCGGCcttcgcggaggaggggcggctgCTGGTCGGCTTCGGTTACcccag
cccgtcctcccccccgccctccttccctgcttccccttgcgTGCGCCTCT
ACGACCTGGGGAAGCGCCGATTGTTGAAGCGGGCCGACTCGGGATGTCtg
agcgggaagggagggcgggaaggcgggcgccCGGGGGGAGGTATCACCCG
GCTGCTGCACCAAGGATCCTGGATCTATGCGGTGGATTGCCTCACTGGGG
TGCACGCCTTGTACTACCTTCCCGGGGAGAATACCTTCACCCTGGTCGCG
GACATGgaggcctccccccggtTGGTCACGGACGCGTTGCTGCTTGATAC
CCGGACGGTCGCCGGTGCCGACCGGCAGGGGAACATTTTTGTGGCGCGAA
CGCCCTGGGAAGCAGTGATGAgtgtggaaggggtggggttGGGGAATGAG
cagaagggtgggagggaggaggggattgGTCCTACGGGTGGGAGAGCCTT
TTGGGAGGtgtgtggggaggggggggaggcgccttCGAGATTGGAGAGTC
TGGTCGAGTACCATGTGGGGGAAACGGTTTCGGCGATGGTCCCGGCCCGC
CTcggacggaagggggagggggctcGGATGGGCTTGCTGTACGCGACGAT
TGAAGGCACCTTAGGAATCTTGTCCCCCCTGTACTCTCCCCGCGAGAAAG
AGGTCTTGCTCAAAGTGGAGGGCGCACTCCTGAAACTCtgtgcggggggg
gagggaaaggaggaagtggatcGGGGTTTGTTTGTAACGGCTCGGGATTT
GGTCACCTTCCGATCGGCCATACGACCGGCGAAAGGGGTGATTGATTTGG
ACGTGATAGTGGCAGCGGGCGCGGAGCGACGGGCGTGGGCGGCGAAAAAG
GCGAAATTGAGCGCAGAAGAGGTAGAAGAGGTATTGAACGAGACCCTTGC
AGGGATGACGTTGATGAGGGGCtaa
back to top
Synonyms
Publications